Wall clock time and date at job start Tue Mar 31 2020 17:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 110.43277 * 2 1 4 4 C 1.34774 * 120.00483 * 302.54455 * 3 2 1 5 5 O 1.21580 * 120.00060 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00194 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00107 * 179.97438 * 6 4 3 8 8 H 1.08994 * 109.47218 * 324.99673 * 7 6 4 9 9 C 1.53002 * 109.47117 * 204.99735 * 7 6 4 10 10 C 1.50696 * 109.47299 * 64.99730 * 9 7 6 11 11 H 1.07999 * 120.00109 * 0.02562 * 10 9 7 12 12 C 1.37875 * 120.00204 * 179.97438 * 10 9 7 13 13 N 1.31515 * 119.99931 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99962 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47050 * 89.99674 * 14 12 10 16 16 H 1.48497 * 109.47339 * 210.00122 * 14 12 10 17 17 H 1.48497 * 109.46901 * 330.00021 * 14 12 10 18 18 C 1.50700 * 109.47322 * 84.99592 * 7 6 4 19 19 C 1.38234 * 120.00260 * 220.00057 * 18 7 6 20 20 C 1.38234 * 120.00240 * 179.97438 * 19 18 7 21 21 C 1.38233 * 120.00037 * 0.26327 * 20 19 18 22 22 C 1.38238 * 119.99752 * 359.47832 * 21 20 19 23 23 C 1.38234 * 120.00033 * 0.49775 * 22 21 20 24 24 C 1.54622 * 110.48392 * 122.54385 * 2 1 3 25 25 C 1.54484 * 101.76593 * 94.01581 * 24 2 1 26 26 N 1.46758 * 105.47270 * 25.41011 * 25 24 2 27 27 C 1.34429 * 111.30507 * 342.98806 * 26 25 24 28 28 O 1.21275 * 124.94248 * 180.40582 * 27 26 25 29 29 H 1.08999 * 109.47248 * 59.29503 * 1 2 3 30 30 H 1.08995 * 109.47130 * 179.29454 * 1 2 3 31 31 H 1.09003 * 109.47096 * 299.29982 * 1 2 3 32 32 H 0.97008 * 119.99423 * 122.54521 * 3 2 1 33 33 H 0.97001 * 119.99980 * 359.97438 * 6 4 3 34 34 H 1.09004 * 109.47232 * 185.00234 * 9 7 6 35 35 H 1.09005 * 109.46819 * 304.99816 * 9 7 6 36 36 H 0.97000 * 119.99466 * 180.02562 * 13 12 10 37 37 H 1.07999 * 119.99751 * 359.97438 * 19 18 7 38 38 H 1.08002 * 119.99744 * 179.97438 * 20 19 18 39 39 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 40 40 H 1.07999 * 119.99934 * 180.25938 * 22 21 20 41 41 H 1.08001 * 120.00294 * 179.76453 * 23 22 21 42 42 H 1.09006 * 110.96544 * 212.12671 * 24 2 1 43 43 H 1.09001 * 110.97360 * 335.89432 * 24 2 1 44 44 H 1.08995 * 110.24754 * 144.41498 * 25 24 2 45 45 H 1.08998 * 110.24310 * 266.32997 * 25 24 2 46 46 H 0.97002 * 124.35388 * 162.96285 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0415 1.3728 0.0000 4 6 1.6884 2.2235 -0.9839 5 8 0.9458 1.8516 -1.8717 6 7 2.1594 3.4863 -0.9841 7 6 1.7760 4.4109 -2.0538 8 1 1.6797 3.8626 -2.9908 9 6 2.8491 5.4913 -2.2031 10 6 4.1371 4.8596 -2.6646 11 1 4.1854 3.7942 -2.8349 12 6 5.2536 5.6418 -2.8705 13 7 6.3775 5.0906 -3.2737 14 14 5.1700 7.4847 -2.5767 15 1 5.5302 7.7780 -1.1662 16 1 6.1216 8.1744 -3.4843 17 1 3.7915 7.9668 -2.8460 18 6 0.4578 5.0562 -1.7118 19 6 -0.4898 5.2574 -2.6979 20 6 -1.6992 5.8488 -2.3840 21 6 -1.9589 6.2439 -1.0850 22 6 -1.0134 6.0379 -0.0978 23 6 0.1958 5.4461 -0.4116 24 6 2.0711 -0.7792 1.2210 25 6 2.2806 -2.1898 0.6270 26 7 2.4802 -1.9828 -0.8122 27 6 2.0622 -0.7632 -1.1929 28 8 2.1055 -0.3369 -2.3274 29 1 -0.3634 0.5247 -0.8836 30 1 -0.3633 -1.0275 -0.0127 31 1 -0.3633 0.5029 0.8962 32 1 2.6343 1.6694 0.7082 33 1 2.7521 3.7830 -0.2759 34 1 2.5228 6.2287 -2.9365 35 1 3.0083 5.9805 -1.2421 36 1 7.1631 5.6410 -3.4182 37 1 -0.2853 4.9525 -3.7135 38 1 -2.4394 6.0063 -3.1546 39 1 -2.9020 6.7100 -0.8406 40 1 -1.2179 6.3428 0.9178 41 1 0.9360 5.2885 0.3589 42 1 3.0151 -0.3571 1.5659 43 1 1.3374 -0.8003 2.0268 44 1 3.1616 -2.6572 1.0666 45 1 1.3996 -2.8073 0.8018 46 1 2.8647 -2.6413 -1.4117 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893778773.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:52 Heat of formation + Delta-G solvation = -30.331750 kcal Electronic energy + Delta-G solvation = -29165.130823 eV Core-core repulsion = 25247.817857 eV Total energy + Delta-G solvation = -3917.312966 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.89543 -39.41772 -38.34152 -36.38867 -35.37411 -34.11201 -32.61003 -31.61302 -30.54039 -30.04041 -29.16386 -28.64130 -25.48068 -24.75329 -22.28321 -22.16301 -21.69532 -21.26145 -19.70773 -19.29225 -17.95460 -17.22591 -16.97965 -16.34881 -16.16770 -16.00254 -15.04143 -14.91963 -14.40387 -14.29365 -14.14566 -13.94747 -13.75208 -13.52462 -13.27807 -13.02198 -12.87966 -12.62365 -12.47779 -12.38940 -12.31139 -12.19206 -11.98095 -11.77675 -11.23079 -11.19893 -11.00195 -10.69426 -10.42778 -10.15673 -9.95181 -9.80028 -9.30224 -9.24413 -9.10775 -8.64828 -8.57411 -8.53705 -8.28214 -8.18198 -6.04289 -4.03386 1.75302 1.78036 2.64043 3.16122 3.28224 3.37322 3.38435 3.41368 3.85694 4.14250 4.19419 4.33929 4.43251 4.60507 4.72007 4.81450 5.19693 5.21706 5.24025 5.25788 5.29669 5.35113 5.43946 5.52870 5.60336 5.62954 5.77005 5.89074 5.91825 6.12348 6.32367 6.35925 6.38306 6.52518 6.64098 6.80807 6.83217 6.89087 6.95779 7.01269 7.02813 7.12144 7.35147 7.38609 7.56094 7.72448 8.42767 8.51728 8.61825 9.04522 9.28119 9.56434 11.08705 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.009215 B = 0.004622 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.710756 B = 6056.706162 C = 8251.669121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.170 3.830 3 N -0.738 5.738 4 C 0.705 3.295 5 O -0.565 6.565 6 N -0.718 5.718 7 C 0.214 3.786 8 H 0.092 0.908 9 C -0.013 4.013 10 C -0.516 4.516 11 H 0.077 0.923 12 C 0.069 3.931 13 N -0.899 5.899 14 Si 0.875 3.125 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.265 1.265 18 C -0.073 4.073 19 C -0.106 4.106 20 C -0.123 4.123 21 C -0.135 4.135 22 C -0.127 4.127 23 C -0.108 4.108 24 C -0.138 4.138 25 C 0.107 3.893 26 N -0.743 5.743 27 C 0.505 3.495 28 O -0.479 6.479 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.396 0.604 33 H 0.394 0.606 34 H 0.033 0.967 35 H 0.017 0.983 36 H 0.263 0.737 37 H 0.122 0.878 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.397 -9.765 14.070 21.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.079 3.921 3 N -0.397 5.397 4 C 0.405 3.595 5 O -0.440 6.440 6 N -0.370 5.370 7 C 0.108 3.892 8 H 0.110 0.890 9 C -0.051 4.051 10 C -0.554 4.554 11 H 0.095 0.905 12 C -0.132 4.132 13 N -0.538 5.538 14 Si 0.702 3.298 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.189 1.189 18 C -0.075 4.075 19 C -0.125 4.125 20 C -0.141 4.141 21 C -0.153 4.153 22 C -0.145 4.145 23 C -0.126 4.126 24 C -0.176 4.176 25 C -0.018 4.018 26 N -0.402 5.402 27 C 0.287 3.713 28 O -0.348 6.348 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.231 0.769 33 H 0.227 0.773 34 H 0.052 0.948 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.140 0.860 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.108 0.892 43 H 0.117 0.883 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -12.929 -9.701 12.586 20.486 hybrid contribution 1.016 0.896 0.673 1.513 sum -11.913 -8.806 13.259 19.881 Atomic orbital electron populations 1.22087 0.91646 1.02409 1.04935 1.20611 0.95803 0.81974 0.93751 1.44951 1.54782 1.10317 1.29617 1.15911 0.81046 0.80770 0.81818 1.90897 1.39995 1.76303 1.36802 1.44996 1.52115 1.10039 1.29877 1.19795 0.89538 0.89880 0.89951 0.88979 1.19876 0.94090 0.93859 0.97267 1.21050 0.92706 0.96515 1.45140 0.90531 1.24995 0.95350 0.98209 0.94642 1.69921 1.01393 1.35797 1.46682 0.86859 0.78379 0.86328 0.78218 1.20371 1.21393 1.18917 1.20652 0.96619 0.96693 0.93495 1.21055 0.93162 0.98761 0.99505 1.21051 0.97099 0.99527 0.96412 1.20992 0.99187 1.01644 0.93504 1.21029 0.94351 1.00280 0.98799 1.20899 0.96751 0.98674 0.96301 1.22974 1.03078 0.94569 0.96990 1.21945 1.02004 0.96924 0.80927 1.46215 1.65997 1.17701 1.10286 1.21139 0.77629 0.82127 0.90408 1.90878 1.52285 1.70491 1.21173 0.88821 0.92043 0.91585 0.76938 0.77269 0.94845 0.96430 0.92758 0.86040 0.86608 0.86896 0.86831 0.86621 0.89193 0.88349 0.90172 0.91022 0.75312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.41 37.16 0.31 -1.57 16 2 C 0.17 2.15 0.89 -131.83 -0.12 2.03 16 3 N -0.74 -10.62 5.15 -52.43 -0.27 -10.89 16 4 C 0.70 13.44 7.79 -86.92 -0.68 12.76 16 5 O -0.56 -12.88 12.02 -16.35 -0.20 -13.07 16 6 N -0.72 -13.47 4.03 -59.82 -0.24 -13.71 16 7 C 0.21 4.45 2.12 -69.08 -0.15 4.30 16 8 H 0.09 2.20 7.44 -51.93 -0.39 1.81 16 9 C -0.01 -0.31 3.56 -27.88 -0.10 -0.41 16 10 C -0.52 -14.37 9.39 -34.44 -0.32 -14.69 16 11 H 0.08 2.40 7.99 -52.49 -0.42 1.98 16 12 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 13 N -0.90 -27.59 13.96 55.43 0.77 -26.81 16 14 Si 0.87 21.31 27.47 -169.99 -4.67 16.65 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 18 C -0.07 -1.35 4.91 -104.62 -0.51 -1.86 16 19 C -0.11 -1.85 9.67 -39.58 -0.38 -2.23 16 20 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 21 C -0.14 -1.87 10.05 -39.58 -0.40 -2.27 16 22 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 23 C -0.11 -1.75 9.32 -39.58 -0.37 -2.12 16 24 C -0.14 -1.00 6.33 -25.10 -0.16 -1.16 16 25 C 0.11 0.71 7.78 -3.12 -0.02 0.68 16 26 N -0.74 -8.04 6.24 -59.20 -0.37 -8.41 16 27 C 0.50 8.05 7.29 -10.86 -0.08 7.97 16 28 O -0.48 -10.61 15.64 -16.09 -0.25 -10.86 16 29 H 0.09 1.57 6.05 -51.93 -0.31 1.25 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.40 4.47 8.34 -40.82 -0.34 4.13 16 33 H 0.39 6.63 8.62 -40.82 -0.35 6.27 16 34 H 0.03 0.80 7.20 -51.93 -0.37 0.42 16 35 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.12 2.07 8.04 -52.49 -0.42 1.65 16 38 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.12 1.72 7.72 -52.49 -0.41 1.32 16 42 H 0.09 0.59 7.85 -51.93 -0.41 0.18 16 43 H 0.10 0.48 7.90 -51.93 -0.41 0.07 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.41 3.90 8.96 -40.82 -0.37 3.53 16 LS Contribution 377.06 15.07 5.68 5.68 Total: -1.00 -38.19 377.06 -10.13 -48.32 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -6.72 Total: 14.20 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -3.87 Total: -1.09 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.11 Total: -59.82 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.45 Total: -23.93 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.19 -10.13 -48.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893778773.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.985 kcal (2) G-P(sol) polarization free energy of solvation -38.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds