Wall clock time and date at job start Tue Mar 31 2020 17:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 110.43277 * 2 1 4 4 C 1.34774 * 120.00483 * 302.54455 * 3 2 1 5 5 O 1.21580 * 120.00060 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00194 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00107 * 179.97438 * 6 4 3 8 8 H 1.08994 * 109.47218 * 324.99673 * 7 6 4 9 9 C 1.53002 * 109.47117 * 204.99735 * 7 6 4 10 10 C 1.50696 * 109.47299 * 64.99730 * 9 7 6 11 11 H 1.07999 * 120.00109 * 0.02562 * 10 9 7 12 12 C 1.37875 * 120.00204 * 179.97438 * 10 9 7 13 13 N 1.31515 * 119.99931 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99962 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47050 * 89.99674 * 14 12 10 16 16 H 1.48497 * 109.47339 * 210.00122 * 14 12 10 17 17 H 1.48497 * 109.46901 * 330.00021 * 14 12 10 18 18 C 1.50700 * 109.47322 * 84.99592 * 7 6 4 19 19 C 1.38234 * 120.00260 * 220.00057 * 18 7 6 20 20 C 1.38234 * 120.00240 * 179.97438 * 19 18 7 21 21 C 1.38233 * 120.00037 * 0.26327 * 20 19 18 22 22 C 1.38238 * 119.99752 * 359.47832 * 21 20 19 23 23 C 1.38234 * 120.00033 * 0.49775 * 22 21 20 24 24 C 1.54622 * 110.48392 * 122.54385 * 2 1 3 25 25 C 1.54484 * 101.76593 * 94.01581 * 24 2 1 26 26 N 1.46758 * 105.47270 * 25.41011 * 25 24 2 27 27 C 1.34429 * 111.30507 * 342.98806 * 26 25 24 28 28 O 1.21275 * 124.94248 * 180.40582 * 27 26 25 29 29 H 1.08999 * 109.47248 * 59.29503 * 1 2 3 30 30 H 1.08995 * 109.47130 * 179.29454 * 1 2 3 31 31 H 1.09003 * 109.47096 * 299.29982 * 1 2 3 32 32 H 0.97008 * 119.99423 * 122.54521 * 3 2 1 33 33 H 0.97001 * 119.99980 * 359.97438 * 6 4 3 34 34 H 1.09004 * 109.47232 * 185.00234 * 9 7 6 35 35 H 1.09005 * 109.46819 * 304.99816 * 9 7 6 36 36 H 0.97000 * 119.99466 * 180.02562 * 13 12 10 37 37 H 1.07999 * 119.99751 * 359.97438 * 19 18 7 38 38 H 1.08002 * 119.99744 * 179.97438 * 20 19 18 39 39 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 40 40 H 1.07999 * 119.99934 * 180.25938 * 22 21 20 41 41 H 1.08001 * 120.00294 * 179.76453 * 23 22 21 42 42 H 1.09006 * 110.96544 * 212.12671 * 24 2 1 43 43 H 1.09001 * 110.97360 * 335.89432 * 24 2 1 44 44 H 1.08995 * 110.24754 * 144.41498 * 25 24 2 45 45 H 1.08998 * 110.24310 * 266.32997 * 25 24 2 46 46 H 0.97002 * 124.35388 * 162.96285 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0415 1.3728 0.0000 4 6 1.6884 2.2235 -0.9839 5 8 0.9458 1.8516 -1.8717 6 7 2.1594 3.4863 -0.9841 7 6 1.7760 4.4109 -2.0538 8 1 1.6797 3.8626 -2.9908 9 6 2.8491 5.4913 -2.2031 10 6 4.1371 4.8596 -2.6646 11 1 4.1854 3.7942 -2.8349 12 6 5.2536 5.6418 -2.8705 13 7 6.3775 5.0906 -3.2737 14 14 5.1700 7.4847 -2.5767 15 1 5.5302 7.7780 -1.1662 16 1 6.1216 8.1744 -3.4843 17 1 3.7915 7.9668 -2.8460 18 6 0.4578 5.0562 -1.7118 19 6 -0.4898 5.2574 -2.6979 20 6 -1.6992 5.8488 -2.3840 21 6 -1.9589 6.2439 -1.0850 22 6 -1.0134 6.0379 -0.0978 23 6 0.1958 5.4461 -0.4116 24 6 2.0711 -0.7792 1.2210 25 6 2.2806 -2.1898 0.6270 26 7 2.4802 -1.9828 -0.8122 27 6 2.0622 -0.7632 -1.1929 28 8 2.1055 -0.3369 -2.3274 29 1 -0.3634 0.5247 -0.8836 30 1 -0.3633 -1.0275 -0.0127 31 1 -0.3633 0.5029 0.8962 32 1 2.6343 1.6694 0.7082 33 1 2.7521 3.7830 -0.2759 34 1 2.5228 6.2287 -2.9365 35 1 3.0083 5.9805 -1.2421 36 1 7.1631 5.6410 -3.4182 37 1 -0.2853 4.9525 -3.7135 38 1 -2.4394 6.0063 -3.1546 39 1 -2.9020 6.7100 -0.8406 40 1 -1.2179 6.3428 0.9178 41 1 0.9360 5.2885 0.3589 42 1 3.0151 -0.3571 1.5659 43 1 1.3374 -0.8003 2.0268 44 1 3.1616 -2.6572 1.0666 45 1 1.3996 -2.8073 0.8018 46 1 2.8647 -2.6413 -1.4117 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893778773.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:51 Heat of formation + Delta-G solvation = -60.058210 kcal Electronic energy + Delta-G solvation = -29166.419859 eV Core-core repulsion = 25247.817857 eV Total energy + Delta-G solvation = -3918.602002 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.02396 -40.76093 -39.63613 -37.61054 -36.87472 -35.41520 -34.68719 -33.00474 -31.72312 -31.18891 -30.90518 -29.52126 -26.84399 -26.10825 -23.57761 -23.31495 -23.02064 -22.56123 -21.21912 -20.49348 -19.29982 -19.04672 -18.31045 -17.68954 -17.28197 -17.01145 -16.42419 -16.35170 -16.16949 -15.62843 -15.35009 -15.20167 -14.97489 -14.85248 -14.56601 -14.40113 -14.20621 -14.11346 -13.87383 -13.56256 -13.46282 -13.16724 -13.11724 -12.99860 -12.88674 -12.45093 -12.33471 -12.03690 -11.94291 -11.78317 -11.69988 -11.44378 -11.24910 -10.81881 -10.74607 -10.04713 -10.03130 -9.75491 -9.69160 -9.49971 -8.28308 -6.33791 0.52272 0.58236 1.35048 1.39312 1.43162 1.50912 1.95436 2.31545 2.35701 2.53006 2.96572 3.05812 3.31005 3.40379 3.61156 3.94968 3.97345 4.05589 4.05900 4.22726 4.34502 4.37257 4.44865 4.60692 4.67542 4.72208 4.75563 4.77886 4.79947 5.00685 5.03936 5.06673 5.16137 5.19693 5.27905 5.32284 5.55692 5.56133 5.65461 5.66572 5.68166 5.89702 5.94890 6.03852 6.14682 6.20596 6.27390 6.73503 7.24158 7.30828 7.32610 7.83419 8.88825 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.009215 B = 0.004622 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.710756 B = 6056.706162 C = 8251.669121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.160 3.840 3 N -0.724 5.724 4 C 0.697 3.303 5 O -0.606 6.606 6 N -0.715 5.715 7 C 0.226 3.774 8 H 0.041 0.959 9 C -0.002 4.002 10 C -0.519 4.519 11 H 0.021 0.979 12 C 0.009 3.991 13 N -0.951 5.951 14 Si 0.952 3.048 15 H -0.256 1.256 16 H -0.288 1.288 17 H -0.250 1.250 18 C -0.096 4.096 19 C -0.134 4.134 20 C -0.124 4.124 21 C -0.127 4.127 22 C -0.121 4.121 23 C -0.115 4.115 24 C -0.123 4.123 25 C 0.101 3.899 26 N -0.730 5.730 27 C 0.485 3.515 28 O -0.563 6.563 29 H 0.040 0.960 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.412 0.588 33 H 0.403 0.597 34 H 0.029 0.971 35 H 0.040 0.960 36 H 0.266 0.734 37 H 0.104 0.896 38 H 0.140 0.860 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.127 0.873 42 H 0.102 0.898 43 H 0.137 0.863 44 H 0.112 0.888 45 H 0.101 0.899 46 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.262 -8.733 18.688 25.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.069 3.931 3 N -0.383 5.383 4 C 0.397 3.603 5 O -0.485 6.485 6 N -0.369 5.369 7 C 0.120 3.880 8 H 0.059 0.941 9 C -0.039 4.039 10 C -0.557 4.557 11 H 0.039 0.961 12 C -0.188 4.188 13 N -0.592 5.592 14 Si 0.775 3.225 15 H -0.181 1.181 16 H -0.214 1.214 17 H -0.174 1.174 18 C -0.098 4.098 19 C -0.153 4.153 20 C -0.142 4.142 21 C -0.145 4.145 22 C -0.139 4.139 23 C -0.133 4.133 24 C -0.161 4.161 25 C -0.022 4.022 26 N -0.387 5.387 27 C 0.269 3.731 28 O -0.439 6.439 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.249 0.751 33 H 0.238 0.762 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.158 0.842 39 H 0.169 0.831 40 H 0.168 0.832 41 H 0.145 0.855 42 H 0.120 0.880 43 H 0.155 0.845 44 H 0.130 0.870 45 H 0.119 0.881 46 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -14.781 -8.738 17.312 24.383 hybrid contribution 1.567 0.381 -0.783 1.793 sum -13.214 -8.357 16.529 22.752 Atomic orbital electron populations 1.22008 0.91395 1.03461 1.03498 1.20986 0.96164 0.80881 0.95049 1.44849 1.54341 1.10552 1.28553 1.16180 0.80793 0.81044 0.82286 1.90879 1.41888 1.76991 1.38702 1.44854 1.52405 1.10151 1.29502 1.19309 0.90891 0.89030 0.88813 0.94110 1.19714 0.92339 0.94207 0.97676 1.21173 0.95181 0.94196 1.45135 0.96101 1.25978 0.94543 1.04147 0.94149 1.70097 1.02491 1.38170 1.48395 0.85639 0.78988 0.78820 0.79061 1.18089 1.21406 1.17355 1.20397 0.95528 0.98641 0.95212 1.21145 0.94806 1.00476 0.98886 1.21348 0.96202 0.98555 0.98093 1.21469 1.00425 1.00088 0.92524 1.21448 0.93084 0.98648 1.00683 1.21070 0.98249 0.98831 0.95174 1.23108 1.04447 0.93305 0.95222 1.22405 1.04871 0.97191 0.77742 1.46321 1.63703 1.16026 1.12639 1.21935 0.77172 0.83731 0.90265 1.90832 1.55982 1.72654 1.24465 0.94041 0.89640 0.89122 0.75053 0.76214 0.95267 0.94200 0.92532 0.87753 0.84215 0.83096 0.83198 0.85515 0.87987 0.84518 0.87014 0.88134 0.74886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.41 71.98 0.61 -2.89 16 2 C 0.16 3.95 0.89 3.60 0.00 3.95 16 3 N -0.72 -21.20 5.15 -438.06 -2.26 -23.46 16 4 C 0.70 28.48 7.79 179.06 1.39 29.87 16 5 O -0.61 -30.41 12.02 16.73 0.20 -30.21 16 6 N -0.72 -28.56 4.03 -461.43 -1.86 -30.43 16 7 C 0.23 10.11 2.12 44.25 0.09 10.21 16 8 H 0.04 2.20 7.44 -2.39 -0.02 2.19 16 9 C 0.00 -0.08 3.56 29.85 0.11 0.03 16 10 C -0.52 -30.64 9.39 25.60 0.24 -30.40 16 11 H 0.02 1.42 7.99 -2.91 -0.02 1.40 16 12 C 0.01 0.51 5.47 84.65 0.46 0.97 16 13 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 14 Si 0.95 44.25 27.47 68.60 1.88 46.13 16 15 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 16 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 17 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 18 C -0.10 -3.65 4.91 -19.86 -0.10 -3.75 16 19 C -0.13 -4.88 9.67 22.27 0.22 -4.66 16 20 C -0.12 -3.52 10.05 22.27 0.22 -3.30 16 21 C -0.13 -3.06 10.05 22.27 0.22 -2.83 16 22 C -0.12 -3.00 10.05 22.27 0.22 -2.78 16 23 C -0.12 -3.56 9.32 22.27 0.21 -3.35 16 24 C -0.12 -1.31 6.33 31.65 0.20 -1.11 16 25 C 0.10 0.94 7.78 86.83 0.68 1.62 16 26 N -0.73 -15.30 6.24 -459.81 -2.87 -18.17 16 27 C 0.48 16.17 7.29 87.90 0.64 16.81 16 28 O -0.56 -27.45 15.64 17.69 0.28 -27.17 16 29 H 0.04 1.47 6.05 -2.39 -0.01 1.45 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.41 9.01 8.34 -92.70 -0.77 8.23 16 33 H 0.40 14.04 8.62 -92.71 -0.80 13.24 16 34 H 0.03 1.42 7.20 -2.39 -0.02 1.41 16 35 H 0.04 1.74 7.57 -2.38 -0.02 1.72 16 36 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 37 H 0.10 3.96 8.04 -2.91 -0.02 3.94 16 38 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 39 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 40 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 41 H 0.13 3.53 7.72 -2.91 -0.02 3.50 16 42 H 0.10 0.90 7.85 -2.38 -0.02 0.88 16 43 H 0.14 0.51 7.90 -2.39 -0.02 0.49 16 44 H 0.11 0.46 8.14 -2.39 -0.02 0.45 16 45 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.41 7.85 8.96 -92.71 -0.83 7.02 16 Total: -1.00 -95.50 377.06 -0.34 -95.83 By element: Atomic # 1 Polarization: 41.08 SS G_CDS: -1.43 Total: 39.65 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 5.42 Total: 8.39 kcal Atomic # 7 Polarization: -125.94 SS G_CDS: -6.69 Total: -132.63 kcal Atomic # 8 Polarization: -57.86 SS G_CDS: 0.48 Total: -57.38 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.13 kcal Total: -95.50 -0.34 -95.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893778773.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.774 kcal (2) G-P(sol) polarization free energy of solvation -95.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds