Wall clock time and date at job start Tue Mar 31 2020 17:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 110.27456 * 2 1 4 4 C 1.34782 * 119.99552 * 60.63681 * 3 2 1 5 5 O 1.21360 * 120.00306 * 0.02562 * 4 3 2 6 6 C 1.49355 * 119.99896 * 180.02562 * 4 3 2 7 7 O 1.21382 * 119.99714 * 359.97438 * 6 4 3 8 8 N 1.34771 * 120.00257 * 180.02562 * 6 4 3 9 9 C 1.39724 * 120.00419 * 175.37882 * 8 6 4 10 10 C 1.38923 * 120.08013 * 214.82222 * 9 8 6 11 11 C 1.38095 * 119.92380 * 179.76823 * 10 9 8 12 12 C 1.38291 * 120.07785 * 0.51099 * 11 10 9 13 13 C 1.50694 * 119.92659 * 179.72236 * 12 11 10 14 14 C 1.50703 * 109.47012 * 270.02121 * 13 12 11 15 15 H 1.07994 * 120.00057 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99891 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99945 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00059 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47406 * 59.99513 * 18 16 14 20 20 H 1.48504 * 109.47441 * 179.97438 * 18 16 14 21 21 H 1.48509 * 109.46964 * 299.99501 * 18 16 14 22 22 C 1.38302 * 120.14825 * 359.74286 * 12 11 10 23 23 C 1.38091 * 120.07746 * 0.02562 * 22 12 11 24 24 C 1.54600 * 110.39051 * 237.85842 * 2 1 3 25 25 C 1.54933 * 102.92014 * 219.07927 * 24 2 1 26 26 N 1.48542 * 103.22713 * 37.41456 * 25 24 2 27 27 C 1.47898 * 105.81741 * 320.79456 * 26 25 24 28 28 H 1.09000 * 109.47184 * 299.36011 * 1 2 3 29 29 H 1.08994 * 109.47678 * 59.36061 * 1 2 3 30 30 H 1.09003 * 109.46974 * 179.36066 * 1 2 3 31 31 H 0.96997 * 120.00253 * 240.64145 * 3 2 1 32 32 H 0.97002 * 119.99584 * 355.37966 * 8 6 4 33 33 H 1.08001 * 120.03529 * 0.02775 * 10 9 8 34 34 H 1.08001 * 119.95824 * 180.27591 * 11 10 9 35 35 H 1.09007 * 109.47281 * 30.02059 * 13 12 11 36 36 H 1.08997 * 109.47271 * 150.01936 * 13 12 11 37 37 H 0.97002 * 120.00013 * 180.02562 * 17 16 14 38 38 H 1.07997 * 119.95789 * 180.02562 * 22 12 11 39 39 H 1.07998 * 120.04062 * 180.02562 * 23 22 12 40 40 H 1.08991 * 110.72629 * 337.44037 * 24 2 1 41 41 H 1.09006 * 110.72181 * 100.54885 * 24 2 1 42 42 H 1.09002 * 110.67008 * 278.97939 * 25 24 2 43 43 H 1.08997 * 110.67080 * 155.84587 * 25 24 2 44 44 H 1.00900 * 110.99534 * 200.27478 * 26 25 24 45 45 H 1.08998 * 109.91732 * 144.68294 * 27 26 25 46 46 H 1.09009 * 109.91313 * 265.97522 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0376 1.3742 0.0000 4 6 1.7342 2.2046 1.0173 5 8 1.0409 1.8139 1.9335 6 6 2.2512 3.6059 1.0171 7 8 2.9450 3.9966 0.1010 8 7 1.9483 4.4361 2.0346 9 6 2.5096 5.7147 2.0839 10 6 2.8347 6.2857 3.3079 11 6 3.3937 7.5476 3.3526 12 6 3.6204 8.2472 2.1814 13 6 4.2248 9.6265 2.2346 14 6 3.1262 10.6527 2.3395 15 1 2.0936 10.3375 2.3656 16 6 3.4393 11.9940 2.4023 17 7 4.6969 12.3778 2.3710 18 14 2.0776 13.2659 2.5331 19 1 1.2904 13.0231 3.7686 20 1 2.6733 14.6253 2.5853 21 1 1.1866 13.1606 1.3497 22 6 3.2931 7.6838 0.9615 23 6 2.7382 6.4204 0.9092 24 6 2.0686 -0.7710 -1.2270 25 6 3.2881 -1.5325 -0.6497 26 7 2.8333 -1.9216 0.7098 27 6 2.0645 -0.7673 1.2234 28 1 -0.3633 0.5039 0.8957 29 1 -0.3634 0.5237 -0.8841 30 1 -0.3633 -1.0276 -0.0115 31 1 2.5920 1.6865 -0.7321 32 1 1.3405 4.1460 2.7327 33 1 2.6542 5.7416 4.2232 34 1 3.6508 7.9903 4.3037 35 1 4.8783 9.7037 3.1036 36 1 4.8033 9.8049 1.3281 37 1 4.9173 13.3214 2.4155 38 1 3.4718 8.2327 0.0487 39 1 2.4832 5.9809 -0.0438 40 1 1.3206 -1.4689 -1.6028 41 1 2.3780 -0.0800 -2.0113 42 1 4.1581 -0.8783 -0.5918 43 1 3.5090 -2.4158 -1.2488 44 1 3.6188 -2.1282 1.3085 45 1 1.2327 -1.1175 1.8346 46 1 2.7149 -0.1204 1.8124 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927807738.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:13 Heat of formation + Delta-G solvation = -38.192325 kcal Electronic energy + Delta-G solvation = -27380.206884 eV Core-core repulsion = 23462.553058 eV Total energy + Delta-G solvation = -3917.653826 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.36425 -40.07627 -38.57063 -37.90665 -35.37273 -34.41450 -33.04598 -31.34077 -30.60629 -30.38928 -29.85355 -27.17087 -26.14743 -24.97377 -23.08873 -22.47689 -22.29463 -21.04157 -20.17464 -19.94694 -18.87732 -17.57524 -16.97037 -16.60675 -16.31848 -16.15014 -15.71600 -15.13003 -15.01069 -14.70846 -14.47620 -14.28388 -14.07225 -13.80491 -13.62301 -13.14048 -12.94061 -12.93610 -12.63802 -12.51677 -12.39380 -12.09517 -11.99198 -11.84634 -11.65667 -11.45977 -11.33755 -11.22429 -10.84320 -10.62805 -10.42693 -10.09480 -9.79534 -9.73267 -9.45686 -9.35251 -9.03353 -8.44492 -8.37760 -7.52520 -6.05906 -4.10231 1.03240 1.89320 1.97241 2.13620 2.99530 3.30862 3.33410 3.35098 3.38211 3.80569 3.90633 4.11741 4.20763 4.34369 4.37932 4.50691 4.75226 4.82422 5.08639 5.14288 5.27852 5.28092 5.29741 5.35397 5.44151 5.44643 5.47519 5.58476 5.77498 5.81825 5.88924 5.93382 5.99444 6.11280 6.23307 6.52342 6.56695 6.72135 6.74878 6.82943 7.08340 7.12394 7.23123 7.45045 7.50376 7.61478 7.80797 7.83689 7.89483 8.29058 8.94739 9.53615 11.03670 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.032181 B = 0.001950 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.861568 B =14357.891584 C =14443.299509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.162 3.838 3 N -0.695 5.695 4 C 0.514 3.486 5 O -0.513 6.513 6 C 0.500 3.500 7 O -0.504 6.504 8 N -0.633 5.633 9 C 0.092 3.908 10 C -0.134 4.134 11 C -0.109 4.109 12 C -0.036 4.036 13 C 0.047 3.953 14 C -0.513 4.513 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.896 3.104 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.110 4.110 23 C -0.113 4.113 24 C -0.125 4.125 25 C 0.034 3.966 26 N -0.672 5.672 27 C 0.041 3.959 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.413 0.587 32 H 0.417 0.583 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.030 0.970 36 H 0.030 0.970 37 H 0.263 0.737 38 H 0.123 0.877 39 H 0.129 0.871 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.045 0.955 43 H 0.087 0.913 44 H 0.341 0.659 45 H 0.092 0.908 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.158 -28.125 -4.995 29.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.076 3.924 3 N -0.349 5.349 4 C 0.294 3.706 5 O -0.388 6.388 6 C 0.281 3.719 7 O -0.379 6.379 8 N -0.278 5.278 9 C 0.000 4.000 10 C -0.154 4.154 11 C -0.128 4.128 12 C -0.036 4.036 13 C 0.010 3.990 14 C -0.551 4.551 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.129 4.129 23 C -0.133 4.133 24 C -0.163 4.163 25 C -0.095 4.095 26 N -0.301 5.301 27 C -0.089 4.089 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.250 0.750 32 H 0.254 0.746 33 H 0.135 0.865 34 H 0.143 0.857 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.157 0.843 45 H 0.110 0.890 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.619 -28.441 -5.184 29.451 hybrid contribution 0.009 1.501 0.326 1.536 sum -5.610 -26.940 -4.858 27.944 Atomic orbital electron populations 1.22182 0.92603 1.03126 1.03665 1.21293 0.95244 0.79981 0.95893 1.46038 1.52669 1.11849 1.24386 1.20087 0.81103 0.86393 0.82981 1.90750 1.36412 1.76709 1.34906 1.20123 0.81873 0.86338 0.83575 1.90787 1.36527 1.76320 1.34231 1.42993 1.45820 1.12922 1.26110 1.17524 1.03377 0.84221 0.94905 1.20793 1.02147 0.97085 0.95384 1.20916 0.99606 0.93333 0.98902 1.20792 0.93792 0.97174 0.91843 1.18371 0.95959 0.86153 0.98494 1.21011 0.92702 0.90437 1.50936 0.92479 1.25017 0.95562 0.98591 0.95183 1.69948 1.16778 1.16291 1.50233 0.86586 0.81953 0.80312 0.78764 1.20165 1.21237 1.20160 1.21026 0.99362 0.94048 0.98425 1.21118 1.00670 0.94366 0.97161 1.22850 0.98407 0.99021 0.96023 1.23090 0.96053 0.99302 0.91087 1.63143 1.26309 1.36841 1.03798 1.23048 0.98862 0.91092 0.95884 0.90249 0.92143 0.90879 0.75010 0.74552 0.86483 0.85734 0.95214 0.95198 0.92758 0.85860 0.85356 0.88741 0.89961 0.93695 0.89462 0.84339 0.89024 0.93350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 8.15 37.16 0.30 -0.86 16 2 C 0.16 1.19 0.95 -130.46 -0.12 1.06 16 3 N -0.69 -5.88 5.08 -46.81 -0.24 -6.12 16 4 C 0.51 5.59 7.04 -11.63 -0.08 5.51 16 5 O -0.51 -6.14 13.77 5.49 0.08 -6.07 16 6 C 0.50 6.49 7.73 -11.63 -0.09 6.40 16 7 O -0.50 -7.61 13.91 5.47 0.08 -7.53 16 8 N -0.63 -8.31 5.32 -10.30 -0.05 -8.36 16 9 C 0.09 1.48 6.30 -83.75 -0.53 0.95 16 10 C -0.13 -2.15 9.97 -39.38 -0.39 -2.54 16 11 C -0.11 -2.05 9.69 -39.61 -0.38 -2.44 16 12 C -0.04 -0.76 5.07 -104.58 -0.53 -1.29 16 13 C 0.05 1.19 5.10 -29.04 -0.15 1.04 16 14 C -0.51 -14.17 9.09 -34.44 -0.31 -14.49 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 18 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.11 -2.17 9.69 -39.61 -0.38 -2.56 16 23 C -0.11 -2.02 8.70 -39.38 -0.34 -2.36 16 24 C -0.12 -0.67 6.28 -24.87 -0.16 -0.82 16 25 C 0.03 0.19 7.55 -1.89 -0.01 0.17 16 26 N -0.67 -4.58 7.51 -110.08 -0.83 -5.40 16 27 C 0.04 0.33 6.02 -2.76 -0.02 0.31 16 28 H 0.08 0.74 6.30 -51.93 -0.33 0.41 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.41 3.14 7.72 -40.82 -0.32 2.83 16 32 H 0.42 4.58 8.30 -40.82 -0.34 4.24 16 33 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 35 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 36 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 39 H 0.13 2.21 6.22 -52.49 -0.33 1.88 16 40 H 0.09 0.45 7.86 -51.93 -0.41 0.05 16 41 H 0.08 0.36 7.73 -51.93 -0.40 -0.05 16 42 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.34 1.98 8.92 -39.29 -0.35 1.63 16 45 H 0.09 0.79 7.68 -51.93 -0.40 0.39 16 46 H 0.05 0.45 7.30 -51.92 -0.38 0.07 16 LS Contribution 379.50 15.07 5.72 5.72 Total: -1.00 -31.32 379.50 -9.42 -40.74 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -6.59 Total: 6.47 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -3.30 Total: -10.36 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: -0.38 Total: -45.33 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.15 Total: -13.60 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.32 -9.42 -40.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927807738.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.545 kcal (2) G-P(sol) polarization free energy of solvation -31.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds