Wall clock time and date at job start Tue Mar 31 2020 17:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 110.27456 * 2 1 4 4 C 1.34782 * 119.99552 * 60.63681 * 3 2 1 5 5 O 1.21360 * 120.00306 * 0.02562 * 4 3 2 6 6 C 1.49355 * 119.99896 * 180.02562 * 4 3 2 7 7 O 1.21382 * 119.99714 * 359.97438 * 6 4 3 8 8 N 1.34771 * 120.00257 * 180.02562 * 6 4 3 9 9 C 1.39724 * 120.00419 * 175.37882 * 8 6 4 10 10 C 1.38923 * 120.08013 * 214.82222 * 9 8 6 11 11 C 1.38095 * 119.92380 * 179.76823 * 10 9 8 12 12 C 1.38291 * 120.07785 * 0.51099 * 11 10 9 13 13 C 1.50694 * 119.92659 * 179.72236 * 12 11 10 14 14 C 1.50703 * 109.47012 * 270.02121 * 13 12 11 15 15 H 1.07994 * 120.00057 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99891 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99945 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00059 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47406 * 59.99513 * 18 16 14 20 20 H 1.48504 * 109.47441 * 179.97438 * 18 16 14 21 21 H 1.48509 * 109.46964 * 299.99501 * 18 16 14 22 22 C 1.38302 * 120.14825 * 359.74286 * 12 11 10 23 23 C 1.38091 * 120.07746 * 0.02562 * 22 12 11 24 24 C 1.54600 * 110.39051 * 237.85842 * 2 1 3 25 25 C 1.54933 * 102.92014 * 219.07927 * 24 2 1 26 26 N 1.48542 * 103.22713 * 37.41456 * 25 24 2 27 27 C 1.47898 * 105.81741 * 320.79456 * 26 25 24 28 28 H 1.09000 * 109.47184 * 299.36011 * 1 2 3 29 29 H 1.08994 * 109.47678 * 59.36061 * 1 2 3 30 30 H 1.09003 * 109.46974 * 179.36066 * 1 2 3 31 31 H 0.96997 * 120.00253 * 240.64145 * 3 2 1 32 32 H 0.97002 * 119.99584 * 355.37966 * 8 6 4 33 33 H 1.08001 * 120.03529 * 0.02775 * 10 9 8 34 34 H 1.08001 * 119.95824 * 180.27591 * 11 10 9 35 35 H 1.09007 * 109.47281 * 30.02059 * 13 12 11 36 36 H 1.08997 * 109.47271 * 150.01936 * 13 12 11 37 37 H 0.97002 * 120.00013 * 180.02562 * 17 16 14 38 38 H 1.07997 * 119.95789 * 180.02562 * 22 12 11 39 39 H 1.07998 * 120.04062 * 180.02562 * 23 22 12 40 40 H 1.08991 * 110.72629 * 337.44037 * 24 2 1 41 41 H 1.09006 * 110.72181 * 100.54885 * 24 2 1 42 42 H 1.09002 * 110.67008 * 278.97939 * 25 24 2 43 43 H 1.08997 * 110.67080 * 155.84587 * 25 24 2 44 44 H 1.00900 * 110.99534 * 200.27478 * 26 25 24 45 45 H 1.08998 * 109.91732 * 144.68294 * 27 26 25 46 46 H 1.09009 * 109.91313 * 265.97522 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0376 1.3742 0.0000 4 6 1.7342 2.2046 1.0173 5 8 1.0409 1.8139 1.9335 6 6 2.2512 3.6059 1.0171 7 8 2.9450 3.9966 0.1010 8 7 1.9483 4.4361 2.0346 9 6 2.5096 5.7147 2.0839 10 6 2.8347 6.2857 3.3079 11 6 3.3937 7.5476 3.3526 12 6 3.6204 8.2472 2.1814 13 6 4.2248 9.6265 2.2346 14 6 3.1262 10.6527 2.3395 15 1 2.0936 10.3375 2.3656 16 6 3.4393 11.9940 2.4023 17 7 4.6969 12.3778 2.3710 18 14 2.0776 13.2659 2.5331 19 1 1.2904 13.0231 3.7686 20 1 2.6733 14.6253 2.5853 21 1 1.1866 13.1606 1.3497 22 6 3.2931 7.6838 0.9615 23 6 2.7382 6.4204 0.9092 24 6 2.0686 -0.7710 -1.2270 25 6 3.2881 -1.5325 -0.6497 26 7 2.8333 -1.9216 0.7098 27 6 2.0645 -0.7673 1.2234 28 1 -0.3633 0.5039 0.8957 29 1 -0.3634 0.5237 -0.8841 30 1 -0.3633 -1.0276 -0.0115 31 1 2.5920 1.6865 -0.7321 32 1 1.3405 4.1460 2.7327 33 1 2.6542 5.7416 4.2232 34 1 3.6508 7.9903 4.3037 35 1 4.8783 9.7037 3.1036 36 1 4.8033 9.8049 1.3281 37 1 4.9173 13.3214 2.4155 38 1 3.4718 8.2327 0.0487 39 1 2.4832 5.9809 -0.0438 40 1 1.3206 -1.4689 -1.6028 41 1 2.3780 -0.0800 -2.0113 42 1 4.1581 -0.8783 -0.5918 43 1 3.5090 -2.4158 -1.2488 44 1 3.6188 -2.1282 1.3085 45 1 1.2327 -1.1175 1.8346 46 1 2.7149 -0.1204 1.8124 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927807738.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:12 Heat of formation + Delta-G solvation = -60.811226 kcal Electronic energy + Delta-G solvation = -27381.187713 eV Core-core repulsion = 23462.553058 eV Total energy + Delta-G solvation = -3918.634655 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.30324 -41.04904 -39.68664 -38.88417 -36.60769 -35.32150 -34.89894 -32.33804 -31.97140 -31.81190 -30.34987 -28.81164 -26.88250 -26.16820 -24.70407 -23.89102 -22.88761 -22.21176 -21.42470 -20.68300 -19.86094 -18.54442 -18.47307 -17.82811 -17.54755 -17.16969 -16.79037 -16.33169 -16.03900 -15.97140 -15.62433 -15.33606 -15.13934 -14.63384 -14.53540 -14.42525 -14.37201 -14.31398 -13.73188 -13.49854 -13.31456 -13.21926 -13.07111 -12.93367 -12.79374 -12.59540 -12.45421 -12.43842 -12.18411 -12.07495 -11.86873 -11.66933 -11.50721 -11.12234 -10.66891 -10.59231 -10.45625 -9.81743 -9.56856 -9.00886 -8.18763 -6.32726 -0.03283 0.52261 0.61375 1.14400 1.40621 1.43029 1.51267 1.99933 2.40166 2.44035 2.93269 3.11258 3.19097 3.32432 3.43249 3.62044 3.83559 4.00614 4.09392 4.26005 4.34748 4.35401 4.47516 4.51849 4.57164 4.62324 4.64663 4.72927 4.82160 4.91138 4.99141 5.05970 5.08375 5.19599 5.25678 5.26514 5.27666 5.36987 5.37766 5.53416 5.69486 5.74859 5.84524 6.04833 6.07167 6.20862 6.22631 6.29248 6.62828 6.79742 6.80944 7.35639 8.89508 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.032181 B = 0.001950 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.861568 B =14357.891584 C =14443.299509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.157 3.843 3 N -0.681 5.681 4 C 0.520 3.480 5 O -0.523 6.523 6 C 0.502 3.498 7 O -0.524 6.524 8 N -0.627 5.627 9 C 0.107 3.893 10 C -0.121 4.121 11 C -0.114 4.114 12 C -0.067 4.067 13 C 0.056 3.944 14 C -0.528 4.528 15 H 0.056 0.944 16 C 0.003 3.997 17 N -0.930 5.930 18 Si 0.965 3.035 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.269 1.269 22 C -0.119 4.119 23 C -0.116 4.116 24 C -0.119 4.119 25 C 0.032 3.968 26 N -0.676 5.676 27 C 0.044 3.956 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.418 0.582 32 H 0.431 0.569 33 H 0.157 0.843 34 H 0.128 0.872 35 H 0.008 0.992 36 H 0.002 0.998 37 H 0.265 0.735 38 H 0.116 0.884 39 H 0.135 0.865 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.044 0.956 43 H 0.100 0.900 44 H 0.346 0.654 45 H 0.083 0.917 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.793 -30.258 -5.159 31.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.072 3.928 3 N -0.335 5.335 4 C 0.300 3.700 5 O -0.400 6.400 6 C 0.284 3.716 7 O -0.400 6.400 8 N -0.274 5.274 9 C 0.014 3.986 10 C -0.140 4.140 11 C -0.132 4.132 12 C -0.068 4.068 13 C 0.019 3.981 14 C -0.566 4.566 15 H 0.074 0.926 16 C -0.195 4.195 17 N -0.570 5.570 18 Si 0.790 3.210 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.194 1.194 22 C -0.138 4.138 23 C -0.136 4.136 24 C -0.157 4.157 25 C -0.096 4.096 26 N -0.305 5.305 27 C -0.086 4.086 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.257 0.743 32 H 0.270 0.730 33 H 0.175 0.825 34 H 0.146 0.854 35 H 0.026 0.974 36 H 0.021 0.979 37 H 0.074 0.926 38 H 0.134 0.866 39 H 0.152 0.848 40 H 0.123 0.877 41 H 0.114 0.886 42 H 0.062 0.938 43 H 0.118 0.882 44 H 0.162 0.838 45 H 0.101 0.899 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -7.263 -30.619 -5.355 31.921 hybrid contribution 0.538 1.992 0.346 2.093 sum -6.725 -28.627 -5.009 29.830 Atomic orbital electron populations 1.22141 0.92447 1.03706 1.02895 1.21462 0.95362 0.79180 0.96780 1.46051 1.51877 1.12001 1.23621 1.19669 0.81220 0.85574 0.83531 1.90761 1.37115 1.76585 1.35506 1.20536 0.81156 0.87107 0.82819 1.90784 1.37352 1.76907 1.34960 1.42931 1.45895 1.11777 1.26760 1.17588 1.01640 0.85039 0.94381 1.21054 1.00225 0.95863 0.96905 1.20986 0.99812 0.94390 0.98027 1.20481 0.96603 0.95966 0.93737 1.18108 0.95147 0.88818 0.96011 1.21347 0.93138 0.91424 1.50667 0.92588 1.25934 0.98009 1.00840 0.94703 1.70076 1.18880 1.16832 1.51176 0.85497 0.78898 0.77488 0.79162 1.19124 1.20670 1.19415 1.20966 1.00146 0.95056 0.97621 1.21152 1.00599 0.93597 0.98262 1.22885 0.98447 0.99091 0.95320 1.23174 0.96079 0.99922 0.90471 1.63155 1.26727 1.36150 1.04516 1.22953 0.98445 0.91267 0.95931 0.92230 0.91572 0.89710 0.74348 0.72976 0.82544 0.85384 0.97412 0.97948 0.92588 0.86603 0.84751 0.87708 0.88592 0.93754 0.88188 0.83815 0.89879 0.94950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.15 71.98 0.59 -1.39 16 2 C 0.16 1.99 0.95 4.48 0.00 2.00 16 3 N -0.68 -10.23 5.08 -420.36 -2.14 -12.37 16 4 C 0.52 10.41 7.04 87.24 0.61 11.02 16 5 O -0.52 -11.69 13.77 -3.28 -0.05 -11.73 16 6 C 0.50 12.10 7.73 87.24 0.67 12.77 16 7 O -0.52 -15.04 13.91 -3.35 -0.05 -15.09 16 8 N -0.63 -14.98 5.32 -304.84 -1.62 -16.60 16 9 C 0.11 3.24 6.30 38.21 0.24 3.48 16 10 C -0.12 -3.60 9.97 22.40 0.22 -3.38 16 11 C -0.11 -4.23 9.69 22.25 0.22 -4.02 16 12 C -0.07 -2.97 5.07 -19.84 -0.10 -3.07 16 13 C 0.06 3.00 5.10 29.10 0.15 3.15 16 14 C -0.53 -30.02 9.09 25.60 0.23 -29.79 16 15 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 16 C 0.00 0.19 5.46 84.65 0.46 0.65 16 17 N -0.93 -56.00 13.29 21.45 0.28 -55.72 16 18 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 C -0.12 -4.82 9.69 22.25 0.22 -4.61 16 23 C -0.12 -4.06 8.70 22.40 0.19 -3.86 16 24 C -0.12 -0.95 6.28 31.80 0.20 -0.75 16 25 C 0.03 0.28 7.55 86.65 0.65 0.94 16 26 N -0.68 -8.02 7.51 -502.20 -3.77 -11.79 16 27 C 0.04 0.65 6.02 86.44 0.52 1.17 16 28 H 0.06 1.03 6.30 -2.39 -0.02 1.01 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.42 5.49 7.72 -92.71 -0.72 4.77 16 32 H 0.43 8.22 8.30 -92.71 -0.77 7.45 16 33 H 0.16 3.44 8.06 -2.91 -0.02 3.41 16 34 H 0.13 4.60 8.06 -2.91 -0.02 4.57 16 35 H 0.01 0.43 8.08 -2.38 -0.02 0.41 16 36 H 0.00 0.13 8.08 -2.39 -0.02 0.11 16 37 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 38 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 39 H 0.13 4.52 6.22 -2.91 -0.02 4.50 16 40 H 0.10 0.67 7.86 -2.39 -0.02 0.66 16 41 H 0.10 0.53 7.73 -2.38 -0.02 0.51 16 42 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.35 3.52 8.92 -89.69 -0.80 2.72 16 45 H 0.08 1.36 7.68 -2.39 -0.02 1.34 16 46 H 0.03 0.57 7.30 -2.38 -0.02 0.56 16 Total: -1.00 -68.68 379.50 -1.47 -70.15 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: -1.25 Total: 22.63 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 5.09 Total: -15.69 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -7.24 Total: -96.48 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.09 Total: -26.82 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -68.68 -1.47 -70.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927807738.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.339 kcal (2) G-P(sol) polarization free energy of solvation -68.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds