Wall clock time and date at job start Tue Mar 31 2020 17:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 110.21308 * 2 1 4 4 N 1.46504 * 109.47151 * 63.06942 * 3 2 1 5 5 C 1.34785 * 119.99858 * 179.97438 * 4 3 2 6 6 O 1.21587 * 119.99991 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99904 * 180.02562 * 5 4 3 8 8 C 1.39941 * 120.00044 * 185.31724 * 7 5 4 9 9 C 1.38864 * 120.06790 * 33.27265 * 8 7 5 10 10 C 1.38112 * 119.92900 * 179.97438 * 9 8 7 11 11 C 1.38285 * 120.07009 * 0.27465 * 10 9 8 12 12 C 1.50697 * 119.92979 * 179.72801 * 11 10 9 13 13 C 1.50702 * 109.47385 * 89.99882 * 12 11 10 14 14 H 1.07996 * 119.99949 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99951 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00199 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00116 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.47155 * 89.99882 * 17 15 13 19 19 H 1.48499 * 109.47161 * 210.00214 * 17 15 13 20 20 H 1.48504 * 109.47278 * 330.00256 * 17 15 13 21 21 C 1.38281 * 120.14095 * 359.44839 * 11 10 9 22 22 C 1.38121 * 120.06462 * 0.55071 * 21 11 10 23 23 C 1.54471 * 110.24770 * 238.07260 * 2 1 3 24 24 C 1.54627 * 101.76563 * 215.49586 * 23 2 1 25 25 C 1.51283 * 104.19379 * 24.79649 * 24 23 2 26 26 O 1.21280 * 124.93945 * 163.71877 * 25 24 23 27 27 N 1.34411 * 110.11594 * 343.74667 * 25 24 23 28 28 H 1.09005 * 109.46887 * 60.69917 * 1 2 3 29 29 H 1.09000 * 109.46842 * 180.69953 * 1 2 3 30 30 H 1.08999 * 109.47134 * 300.70097 * 1 2 3 31 31 H 1.09000 * 109.47440 * 303.06992 * 3 2 1 32 32 H 1.08997 * 109.47237 * 183.06851 * 3 2 1 33 33 H 0.96996 * 119.99884 * 0.02562 * 4 3 2 34 34 H 0.97007 * 119.99850 * 5.32219 * 7 5 4 35 35 H 1.07998 * 120.04059 * 0.02562 * 9 8 7 36 36 H 1.08001 * 119.96867 * 180.02562 * 10 9 8 37 37 H 1.09001 * 109.47089 * 210.00035 * 12 11 10 38 38 H 1.09005 * 109.47443 * 329.99227 * 12 11 10 39 39 H 0.96993 * 120.00155 * 180.02562 * 16 15 13 40 40 H 1.07992 * 119.96727 * 180.27899 * 21 11 10 41 41 H 1.07997 * 120.03045 * 179.74741 * 22 21 11 42 42 H 1.09011 * 110.97036 * 333.61572 * 23 2 1 43 43 H 1.09005 * 110.97540 * 97.33476 * 23 2 1 44 44 H 1.09000 * 110.48479 * 143.47693 * 24 23 2 45 45 H 1.09000 * 110.48466 * 266.11730 * 24 23 2 46 46 H 0.96998 * 124.35119 * 179.59197 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0587 1.4358 0.0000 4 7 1.6404 2.1102 1.2315 5 6 1.9940 3.3921 1.4512 6 8 2.6598 3.9889 0.6273 7 7 1.6096 4.0124 2.5843 8 6 1.8804 5.3737 2.7633 9 6 1.8803 6.2324 1.6720 10 6 2.1474 7.5754 1.8519 11 6 2.4202 8.0643 3.1164 12 6 2.7172 9.5292 3.3082 13 6 1.4328 10.2718 3.5724 14 1 0.4951 9.7366 3.5984 15 6 1.4548 11.6346 3.7810 16 7 0.3338 12.2828 4.0111 17 14 3.0767 12.5602 3.7369 18 1 3.3476 13.0185 2.3505 19 1 3.0005 13.7359 4.6409 20 1 4.1716 11.6621 4.1841 21 6 2.4155 7.2128 4.2060 22 6 2.1491 5.8687 4.0326 23 6 2.0647 -0.7664 -1.2300 24 6 3.3301 -1.4433 -0.6542 25 6 3.0548 -1.5427 0.8300 26 8 3.6615 -2.2537 1.6029 27 7 2.0397 -0.7288 1.1675 28 1 -0.3633 0.5030 -0.8962 29 1 -0.3633 -1.0276 0.0125 30 1 -0.3633 0.5247 0.8836 31 1 1.6581 1.9705 -0.8612 32 1 3.1472 1.4222 -0.0550 33 1 1.1096 1.6340 1.8889 34 1 1.1453 3.5152 3.2759 35 1 1.6708 5.8507 0.6837 36 1 2.1471 8.2439 1.0037 37 1 3.3908 9.6554 4.1559 38 1 3.1877 9.9255 2.4083 39 1 0.3493 13.2415 4.1575 40 1 2.6245 7.5984 5.1928 41 1 2.1495 5.2035 4.8834 42 1 1.3442 -1.5108 -1.5693 43 1 2.3216 -0.0795 -2.0364 44 1 3.4614 -2.4358 -1.0852 45 1 4.2099 -0.8268 -0.8387 46 1 1.6890 -0.6353 2.0670 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932564622.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:26 Heat of formation + Delta-G solvation = -41.496963 kcal Electronic energy + Delta-G solvation = -27186.416058 eV Core-core repulsion = 23268.618932 eV Total energy + Delta-G solvation = -3917.797126 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.36504 -40.40635 -38.52218 -37.64783 -35.03278 -34.61915 -32.93432 -31.96216 -31.44123 -30.61660 -30.33301 -27.65481 -26.48762 -24.80035 -23.00550 -22.39423 -21.57652 -21.16184 -20.70460 -20.12538 -18.72379 -17.74138 -17.31332 -16.75367 -16.53145 -16.05803 -15.43589 -15.37537 -14.89538 -14.71607 -14.57121 -14.16869 -14.09738 -13.94240 -13.86040 -13.43647 -13.21604 -13.14683 -12.88240 -12.80960 -12.44102 -12.38639 -12.26480 -11.68801 -11.66748 -11.57881 -11.46194 -10.87525 -10.50075 -10.37061 -10.34195 -10.18236 -9.92099 -9.73770 -9.58588 -9.44843 -9.28863 -8.57083 -8.33020 -7.38947 -6.06316 -4.05082 1.88165 2.02194 2.12961 2.37265 2.75337 3.08742 3.30242 3.37857 3.41207 3.66563 3.80397 3.93581 4.02309 4.21816 4.39712 4.42933 4.45578 4.69642 4.93233 5.05631 5.07012 5.12580 5.23034 5.25585 5.32834 5.34994 5.38921 5.47927 5.52033 5.85782 5.95823 5.96251 6.05822 6.13197 6.26900 6.45698 6.48545 6.58161 6.83174 6.95795 6.97399 7.06431 7.09700 7.60363 7.62566 7.73108 7.74930 7.76209 8.39937 8.51145 8.99117 9.54287 11.06581 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.031303 B = 0.001897 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.276447 B =14756.849255 C =14875.375737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.144 3.856 3 C 0.135 3.865 4 N -0.744 5.744 5 C 0.702 3.298 6 O -0.569 6.569 7 N -0.681 5.681 8 C 0.127 3.873 9 C -0.116 4.116 10 C -0.104 4.104 11 C -0.040 4.040 12 C 0.014 3.986 13 C -0.511 4.511 14 H 0.074 0.926 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.878 3.122 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.104 4.104 22 C -0.145 4.145 23 C -0.119 4.119 24 C -0.159 4.159 25 C 0.522 3.478 26 O -0.533 6.533 27 N -0.723 5.723 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.393 0.607 34 H 0.401 0.599 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.028 0.972 38 H 0.024 0.976 39 H 0.264 0.736 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.050 -29.145 -9.573 30.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.057 3.943 3 C 0.009 3.991 4 N -0.401 5.401 5 C 0.403 3.597 6 O -0.445 6.445 7 N -0.328 5.328 8 C 0.034 3.966 9 C -0.136 4.136 10 C -0.123 4.123 11 C -0.041 4.041 12 C -0.023 4.023 13 C -0.549 4.549 14 H 0.092 0.908 15 C -0.133 4.133 16 N -0.539 5.539 17 Si 0.705 3.295 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.123 4.123 22 C -0.165 4.165 23 C -0.158 4.158 24 C -0.199 4.199 25 C 0.308 3.692 26 O -0.409 6.409 27 N -0.379 5.379 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.226 0.774 34 H 0.235 0.765 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.046 0.954 38 H 0.042 0.958 39 H 0.074 0.926 40 H 0.141 0.859 41 H 0.133 0.867 42 H 0.110 0.890 43 H 0.116 0.884 44 H 0.123 0.877 45 H 0.126 0.874 46 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 0.960 -28.856 -10.053 30.572 hybrid contribution -0.032 0.249 1.140 1.168 sum 0.928 -28.607 -8.913 29.978 Atomic orbital electron populations 1.22118 0.92370 1.03198 1.03673 1.21342 0.95335 0.91029 0.86602 1.21636 1.00450 0.89962 0.87029 1.44967 1.59572 1.12084 1.23484 1.15884 0.80087 0.81167 0.82581 1.90972 1.42448 1.65152 1.45936 1.42464 1.61388 1.09435 1.19483 1.17291 1.03734 0.81066 0.94525 1.20984 1.01731 0.92779 0.98130 1.20964 0.99714 0.94105 0.97511 1.20290 0.94507 0.97100 0.92202 1.18806 0.98100 0.88182 0.97215 1.20943 0.92791 0.92412 1.48774 0.90814 1.25007 0.96246 0.97518 0.94575 1.69898 1.26285 1.08787 1.48953 0.86804 0.84749 0.79625 0.78332 1.20164 1.21306 1.18909 1.20834 1.00432 0.91935 0.99067 1.20699 1.04482 0.96338 0.95023 1.22659 0.96940 0.99891 0.96269 1.22405 1.00012 1.04282 0.93196 1.20896 0.78844 0.78346 0.91110 1.90785 1.51681 1.40814 1.57607 1.46364 1.36491 1.43956 1.11081 0.90182 0.91276 0.91813 0.89852 0.90914 0.77358 0.76453 0.85629 0.86015 0.95413 0.95820 0.92644 0.85920 0.86744 0.89024 0.88361 0.87721 0.87426 0.75321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.38 8.67 37.16 0.32 -0.05 16 2 C 0.14 0.52 0.83 -130.90 -0.11 0.41 16 3 C 0.13 0.83 4.72 -4.04 -0.02 0.81 16 4 N -0.74 -5.48 5.17 -65.22 -0.34 -5.82 16 5 C 0.70 8.63 8.30 -86.91 -0.72 7.91 16 6 O -0.57 -9.45 14.03 5.29 0.07 -9.38 16 7 N -0.68 -8.07 5.35 -14.22 -0.08 -8.15 16 8 C 0.13 2.03 6.28 -83.69 -0.53 1.50 16 9 C -0.12 -2.10 8.65 -39.40 -0.34 -2.44 16 10 C -0.10 -2.07 9.69 -39.61 -0.38 -2.46 16 11 C -0.04 -0.86 5.07 -104.59 -0.53 -1.39 16 12 C 0.01 0.34 4.17 -29.04 -0.12 0.22 16 13 C -0.51 -14.48 9.65 -34.44 -0.33 -14.81 16 14 H 0.07 2.28 7.98 -52.49 -0.42 1.86 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 16 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 17 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 21 C -0.10 -1.95 9.69 -39.61 -0.38 -2.34 16 22 C -0.14 -2.31 9.96 -39.39 -0.39 -2.70 16 23 C -0.12 -0.29 6.20 -25.10 -0.16 -0.44 16 24 C -0.16 -0.70 6.86 -26.74 -0.18 -0.88 16 25 C 0.52 4.16 8.43 -10.86 -0.09 4.07 16 26 O -0.53 -6.83 18.03 5.56 0.10 -6.73 16 27 N -0.72 -3.75 5.22 -46.62 -0.24 -4.00 16 28 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.06 0.15 7.10 -51.93 -0.37 -0.21 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.39 1.80 7.27 -40.82 -0.30 1.50 16 34 H 0.40 3.26 8.83 -40.82 -0.36 2.90 16 35 H 0.13 2.25 6.41 -52.49 -0.34 1.91 16 36 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 37 H 0.03 0.66 7.14 -51.93 -0.37 0.29 16 38 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 41 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.09 0.12 7.91 -51.92 -0.41 -0.29 16 43 H 0.10 0.13 7.89 -51.93 -0.41 -0.28 16 44 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.41 1.81 8.81 -40.82 -0.36 1.45 16 LS Contribution 380.82 15.07 5.74 5.74 Total: -1.00 -37.38 380.82 -9.40 -46.78 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.69 Total: 2.26 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -4.07 Total: -10.73 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.12 Total: -44.72 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: 0.17 Total: -16.11 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.38 -9.40 -46.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932564622.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.281 kcal (2) G-P(sol) polarization free energy of solvation -37.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds