Wall clock time and date at job start Tue Mar 31 2020 17:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 110.21308 * 2 1 4 4 N 1.46504 * 109.47151 * 63.06942 * 3 2 1 5 5 C 1.34785 * 119.99858 * 179.97438 * 4 3 2 6 6 O 1.21587 * 119.99991 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99904 * 180.02562 * 5 4 3 8 8 C 1.39941 * 120.00044 * 185.31724 * 7 5 4 9 9 C 1.38864 * 120.06790 * 33.27265 * 8 7 5 10 10 C 1.38112 * 119.92900 * 179.97438 * 9 8 7 11 11 C 1.38285 * 120.07009 * 0.27465 * 10 9 8 12 12 C 1.50697 * 119.92979 * 179.72801 * 11 10 9 13 13 C 1.50702 * 109.47385 * 89.99882 * 12 11 10 14 14 H 1.07996 * 119.99949 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99951 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00199 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00116 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.47155 * 89.99882 * 17 15 13 19 19 H 1.48499 * 109.47161 * 210.00214 * 17 15 13 20 20 H 1.48504 * 109.47278 * 330.00256 * 17 15 13 21 21 C 1.38281 * 120.14095 * 359.44839 * 11 10 9 22 22 C 1.38121 * 120.06462 * 0.55071 * 21 11 10 23 23 C 1.54471 * 110.24770 * 238.07260 * 2 1 3 24 24 C 1.54627 * 101.76563 * 215.49586 * 23 2 1 25 25 C 1.51283 * 104.19379 * 24.79649 * 24 23 2 26 26 O 1.21280 * 124.93945 * 163.71877 * 25 24 23 27 27 N 1.34411 * 110.11594 * 343.74667 * 25 24 23 28 28 H 1.09005 * 109.46887 * 60.69917 * 1 2 3 29 29 H 1.09000 * 109.46842 * 180.69953 * 1 2 3 30 30 H 1.08999 * 109.47134 * 300.70097 * 1 2 3 31 31 H 1.09000 * 109.47440 * 303.06992 * 3 2 1 32 32 H 1.08997 * 109.47237 * 183.06851 * 3 2 1 33 33 H 0.96996 * 119.99884 * 0.02562 * 4 3 2 34 34 H 0.97007 * 119.99850 * 5.32219 * 7 5 4 35 35 H 1.07998 * 120.04059 * 0.02562 * 9 8 7 36 36 H 1.08001 * 119.96867 * 180.02562 * 10 9 8 37 37 H 1.09001 * 109.47089 * 210.00035 * 12 11 10 38 38 H 1.09005 * 109.47443 * 329.99227 * 12 11 10 39 39 H 0.96993 * 120.00155 * 180.02562 * 16 15 13 40 40 H 1.07992 * 119.96727 * 180.27899 * 21 11 10 41 41 H 1.07997 * 120.03045 * 179.74741 * 22 21 11 42 42 H 1.09011 * 110.97036 * 333.61572 * 23 2 1 43 43 H 1.09005 * 110.97540 * 97.33476 * 23 2 1 44 44 H 1.09000 * 110.48479 * 143.47693 * 24 23 2 45 45 H 1.09000 * 110.48466 * 266.11730 * 24 23 2 46 46 H 0.96998 * 124.35119 * 179.59197 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0587 1.4358 0.0000 4 7 1.6404 2.1102 1.2315 5 6 1.9940 3.3921 1.4512 6 8 2.6598 3.9889 0.6273 7 7 1.6096 4.0124 2.5843 8 6 1.8804 5.3737 2.7633 9 6 1.8803 6.2324 1.6720 10 6 2.1474 7.5754 1.8519 11 6 2.4202 8.0643 3.1164 12 6 2.7172 9.5292 3.3082 13 6 1.4328 10.2718 3.5724 14 1 0.4951 9.7366 3.5984 15 6 1.4548 11.6346 3.7810 16 7 0.3338 12.2828 4.0111 17 14 3.0767 12.5602 3.7369 18 1 3.3476 13.0185 2.3505 19 1 3.0005 13.7359 4.6409 20 1 4.1716 11.6621 4.1841 21 6 2.4155 7.2128 4.2060 22 6 2.1491 5.8687 4.0326 23 6 2.0647 -0.7664 -1.2300 24 6 3.3301 -1.4433 -0.6542 25 6 3.0548 -1.5427 0.8300 26 8 3.6615 -2.2537 1.6029 27 7 2.0397 -0.7288 1.1675 28 1 -0.3633 0.5030 -0.8962 29 1 -0.3633 -1.0276 0.0125 30 1 -0.3633 0.5247 0.8836 31 1 1.6581 1.9705 -0.8612 32 1 3.1472 1.4222 -0.0550 33 1 1.1096 1.6340 1.8889 34 1 1.1453 3.5152 3.2759 35 1 1.6708 5.8507 0.6837 36 1 2.1471 8.2439 1.0037 37 1 3.3908 9.6554 4.1559 38 1 3.1877 9.9255 2.4083 39 1 0.3493 13.2415 4.1575 40 1 2.6245 7.5984 5.1928 41 1 2.1495 5.2035 4.8834 42 1 1.3442 -1.5108 -1.5693 43 1 2.3216 -0.0795 -2.0364 44 1 3.4614 -2.4358 -1.0852 45 1 4.2099 -0.8268 -0.8387 46 1 1.6890 -0.6353 2.0670 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932564622.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:26 Heat of formation + Delta-G solvation = -69.497562 kcal Electronic energy + Delta-G solvation = -27187.630255 eV Core-core repulsion = 23268.618932 eV Total energy + Delta-G solvation = -3919.011323 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.98091 -41.35404 -39.77372 -38.37411 -36.30998 -35.47482 -34.86494 -32.64109 -32.32567 -31.76996 -31.59743 -28.93792 -27.40046 -25.32731 -24.55658 -23.81933 -22.44527 -21.95704 -21.45630 -21.21832 -19.63662 -18.94867 -18.75507 -17.91330 -17.22424 -16.92007 -16.64208 -16.22856 -16.13800 -15.92564 -15.57371 -15.29975 -15.07797 -14.86342 -14.43359 -14.37049 -14.29845 -14.19169 -14.02478 -13.81724 -13.49739 -13.43445 -13.25307 -13.11479 -12.58639 -12.49945 -12.25749 -12.00110 -11.86744 -11.84345 -11.80870 -11.63013 -11.29959 -10.98347 -10.95576 -10.77068 -10.25941 -10.18873 -9.75167 -8.77721 -8.28140 -6.32603 0.48697 0.58820 1.37992 1.38956 1.51201 1.51266 1.54260 2.04662 2.30661 2.36679 3.00660 3.05999 3.10703 3.37942 3.49912 3.60448 3.91034 4.05172 4.09146 4.15850 4.33175 4.41206 4.56705 4.59161 4.64778 4.67681 4.74531 4.77711 4.88228 4.91897 5.06443 5.08886 5.10186 5.12002 5.25952 5.28120 5.35131 5.39112 5.45211 5.57984 5.65612 5.82819 5.91220 5.98622 6.02848 6.18605 6.31443 6.73346 6.93172 7.20395 7.30535 7.45386 8.88077 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.031303 B = 0.001897 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.276447 B =14756.849255 C =14875.375737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.152 3.848 3 C 0.132 3.868 4 N -0.722 5.722 5 C 0.699 3.301 6 O -0.613 6.613 7 N -0.669 5.669 8 C 0.141 3.859 9 C -0.125 4.125 10 C -0.118 4.118 11 C -0.077 4.077 12 C 0.021 3.979 13 C -0.516 4.516 14 H 0.030 0.970 15 C 0.007 3.993 16 N -0.948 5.948 17 Si 0.949 3.051 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.246 1.246 21 C -0.112 4.112 22 C -0.134 4.134 23 C -0.112 4.112 24 C -0.157 4.157 25 C 0.511 3.489 26 O -0.591 6.591 27 N -0.714 5.714 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.409 0.591 34 H 0.422 0.578 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.033 0.967 38 H 0.025 0.975 39 H 0.267 0.733 40 H 0.129 0.871 41 H 0.156 0.844 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.110 0.890 46 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.407 -31.154 -9.971 32.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.066 3.934 3 C 0.007 3.993 4 N -0.379 5.379 5 C 0.399 3.601 6 O -0.493 6.493 7 N -0.318 5.318 8 C 0.046 3.954 9 C -0.145 4.145 10 C -0.137 4.137 11 C -0.078 4.078 12 C -0.016 4.016 13 C -0.554 4.554 14 H 0.048 0.952 15 C -0.190 4.190 16 N -0.589 5.589 17 Si 0.772 3.228 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.169 1.169 21 C -0.130 4.130 22 C -0.155 4.155 23 C -0.150 4.150 24 C -0.196 4.196 25 C 0.299 3.701 26 O -0.472 6.472 27 N -0.368 5.368 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.246 0.754 34 H 0.261 0.739 35 H 0.143 0.857 36 H 0.133 0.867 37 H 0.051 0.949 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.147 0.853 41 H 0.173 0.827 42 H 0.129 0.871 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.128 0.872 46 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 1.259 -30.925 -10.446 32.666 hybrid contribution -0.260 0.722 1.232 1.451 sum 0.999 -30.203 -9.214 31.593 Atomic orbital electron populations 1.22123 0.90803 1.03925 1.04265 1.21391 0.96251 0.89246 0.86545 1.21792 0.99770 0.91317 0.86459 1.44817 1.58487 1.10420 1.24192 1.16085 0.79762 0.82262 0.81995 1.90954 1.44466 1.66535 1.47303 1.42284 1.61328 1.07960 1.20253 1.17361 1.01422 0.82651 0.93947 1.21013 1.02188 0.92332 0.98984 1.20971 1.00538 0.95116 0.97032 1.20165 0.97859 0.96058 0.93697 1.18647 0.95847 0.89938 0.97215 1.21164 0.93127 0.92819 1.48310 0.95177 1.25971 1.00331 0.98581 0.94140 1.70051 1.28970 1.09318 1.50542 0.85671 0.80064 0.78248 0.78781 1.19266 1.20767 1.16943 1.21005 1.00376 0.93082 0.98579 1.20998 1.02581 0.95644 0.96256 1.22748 0.96123 1.00222 0.95863 1.22447 1.01201 1.05232 0.90764 1.21532 0.78574 0.77690 0.92310 1.90748 1.53745 1.43331 1.59339 1.46427 1.35535 1.42956 1.11876 0.89268 0.90503 0.91607 0.89424 0.92405 0.75389 0.73927 0.85695 0.86694 0.94859 0.95653 0.92409 0.85280 0.82657 0.87146 0.86746 0.86791 0.87171 0.74977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.22 8.67 71.98 0.62 0.40 16 2 C 0.15 0.67 0.83 4.06 0.00 0.68 16 3 C 0.13 1.32 4.72 86.38 0.41 1.73 16 4 N -0.72 -8.82 5.17 -478.52 -2.47 -11.30 16 5 C 0.70 15.73 8.30 179.05 1.49 17.22 16 6 O -0.61 -19.74 14.03 -3.99 -0.06 -19.80 16 7 N -0.67 -14.07 5.35 -317.18 -1.70 -15.76 16 8 C 0.14 4.24 6.28 38.15 0.24 4.48 16 9 C -0.12 -4.48 8.65 22.39 0.19 -4.29 16 10 C -0.12 -4.79 9.69 22.25 0.22 -4.58 16 11 C -0.08 -3.32 5.07 -19.84 -0.10 -3.42 16 12 C 0.02 1.01 4.17 29.10 0.12 1.13 16 13 C -0.52 -30.20 9.65 25.60 0.25 -29.96 16 14 H 0.03 1.96 7.98 -2.91 -0.02 1.94 16 15 C 0.01 0.39 5.47 84.65 0.46 0.86 16 16 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 17 Si 0.95 44.41 27.47 68.60 1.88 46.30 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 20 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 21 C -0.11 -4.11 9.69 22.25 0.22 -3.89 16 22 C -0.13 -3.95 9.96 22.39 0.22 -3.73 16 23 C -0.11 -0.19 6.20 31.65 0.20 0.00 16 24 C -0.16 -1.10 6.86 30.59 0.21 -0.89 16 25 C 0.51 7.70 8.43 87.90 0.74 8.44 16 26 O -0.59 -15.37 18.03 -3.03 -0.05 -15.42 16 27 N -0.71 -6.09 5.22 -419.99 -2.19 -8.28 16 28 H 0.09 0.04 8.14 -2.38 -0.02 0.02 16 29 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.06 0.09 7.10 -2.39 -0.02 0.07 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.41 2.43 7.27 -92.71 -0.67 1.76 16 34 H 0.42 5.29 8.83 -92.70 -0.82 4.47 16 35 H 0.13 4.48 6.41 -2.91 -0.02 4.46 16 36 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 37 H 0.03 1.56 7.14 -2.39 -0.02 1.54 16 38 H 0.03 1.20 7.51 -2.38 -0.02 1.18 16 39 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 40 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 41 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 42 H 0.11 -0.14 7.91 -2.38 -0.02 -0.16 16 43 H 0.11 -0.09 7.89 -2.38 -0.02 -0.11 16 44 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.41 2.85 8.81 -92.71 -0.82 2.04 16 Total: -1.00 -85.50 380.82 -0.14 -85.63 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -1.33 Total: 13.80 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 5.49 Total: -15.81 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -6.06 Total: -94.69 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -0.11 Total: -35.23 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.88 Total: 46.30 kcal Total: -85.50 -0.14 -85.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932564622.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.133 kcal (2) G-P(sol) polarization free energy of solvation -85.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds