Wall clock time and date at job start Tue Mar 31 2020 17:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 110.88346 * 2 1 4 4 N 1.34777 * 120.00193 * 56.12260 * 3 2 1 5 5 O 1.21286 * 120.00304 * 236.12546 * 3 2 1 6 6 C 1.55155 * 111.00271 * 236.12445 * 2 1 3 7 7 C 1.54330 * 102.94038 * 206.38276 * 6 2 1 8 8 N 1.47021 * 107.27055 * 22.19173 * 7 6 2 9 9 C 1.34771 * 125.64895 * 181.02484 * 8 7 6 10 10 O 1.21581 * 120.00108 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99852 * 0.29722 * 9 8 7 12 12 C 1.39945 * 120.00102 * 175.10022 * 11 9 8 13 13 C 1.38873 * 120.06895 * 214.81555 * 12 11 9 14 14 C 1.38114 * 119.92560 * 179.74739 * 13 12 11 15 15 C 1.38286 * 120.07319 * 0.52372 * 14 13 12 16 16 C 1.50693 * 119.93100 * 179.72145 * 15 14 13 17 17 C 1.50697 * 109.47362 * 270.02812 * 16 15 14 18 18 H 1.08000 * 120.00331 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99958 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00042 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99964 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47038 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47202 * 119.99681 * 21 19 17 24 24 H 1.48499 * 109.46931 * 240.00052 * 21 19 17 25 25 C 1.38289 * 120.13547 * 359.75403 * 15 14 13 26 26 C 1.38108 * 120.06988 * 359.97045 * 25 15 14 27 27 C 1.47429 * 108.70313 * 1.28611 * 8 7 6 28 28 H 1.09003 * 109.46907 * 183.87935 * 1 2 3 29 29 H 1.09001 * 109.47104 * 303.87691 * 1 2 3 30 30 H 1.08998 * 109.47600 * 63.88134 * 1 2 3 31 31 H 0.97002 * 119.99715 * 359.97438 * 4 3 2 32 32 H 0.96998 * 120.00205 * 179.97438 * 4 3 2 33 33 H 1.09001 * 110.72051 * 88.01851 * 6 2 1 34 34 H 1.08999 * 110.87511 * 324.81642 * 6 2 1 35 35 H 1.09005 * 109.87992 * 262.77230 * 7 6 2 36 36 H 1.08999 * 109.87815 * 141.61290 * 7 6 2 37 37 H 0.97000 * 120.00475 * 355.10442 * 11 9 8 38 38 H 1.07991 * 120.03368 * 0.02562 * 13 12 11 39 39 H 1.08006 * 119.96552 * 180.27791 * 14 13 12 40 40 H 1.08995 * 109.47014 * 30.02735 * 16 15 14 41 41 H 1.09004 * 109.46867 * 150.02915 * 16 15 14 42 42 H 0.97001 * 120.00053 * 179.97438 * 20 19 17 43 43 H 1.08000 * 119.95764 * 179.97438 * 25 15 14 44 44 H 1.08001 * 120.03095 * 180.02562 * 26 25 15 45 45 H 1.09000 * 110.36338 * 94.47916 * 27 8 7 46 46 H 1.08997 * 110.36413 * 216.80771 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0672 1.4080 0.0000 4 7 1.6996 2.2696 0.9690 5 8 2.8304 1.7660 -0.8720 6 6 2.0861 -0.8074 -1.2026 7 6 3.4679 -1.2729 -0.6970 8 7 3.4281 -1.2421 0.7724 9 6 4.4491 -1.5602 1.5926 10 8 4.3023 -1.4987 2.7980 11 7 5.6345 -1.9411 1.0767 12 6 6.7244 -2.1723 1.9235 13 6 8.0103 -1.8572 1.5043 14 6 9.0833 -2.0817 2.3444 15 6 8.8794 -2.6296 3.5976 16 6 10.0531 -2.8790 4.5093 17 6 10.5919 -4.2653 4.2667 18 1 10.1303 -4.9023 3.5267 19 6 11.6735 -4.7209 4.9903 20 7 12.2347 -3.9459 5.8924 21 14 12.3419 -6.4391 4.6891 22 1 11.5395 -7.1039 3.6311 23 1 13.7588 -6.3499 4.2539 24 1 12.2581 -7.2297 5.9434 25 6 7.6006 -2.9498 4.0157 26 6 6.5229 -2.7224 3.1824 27 6 2.0844 -0.8118 1.2000 28 1 -0.3633 -1.0254 0.0695 29 1 -0.3633 0.5728 0.8532 30 1 -0.3634 0.4524 -0.9227 31 1 1.0889 1.9835 1.6663 32 1 2.0456 3.1758 0.9692 33 1 2.1914 -0.1691 -2.0799 34 1 1.4482 -1.6630 -1.4242 35 1 4.2425 -0.5980 -1.0611 36 1 3.6659 -2.2880 -1.0413 37 1 5.7322 -2.0550 0.1183 38 1 8.1706 -1.4329 0.5242 39 1 10.0832 -1.8327 2.0208 40 1 10.8331 -2.1454 4.3062 41 1 9.7321 -2.7904 5.5472 42 1 12.9954 -4.2665 6.4018 43 1 7.4447 -3.3780 4.9948 44 1 5.5245 -2.9723 3.5097 45 1 1.4538 -1.6784 1.3984 46 1 2.1524 -0.1801 2.0857 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932567119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:33 Heat of formation + Delta-G solvation = -43.216269 kcal Electronic energy + Delta-G solvation = -27735.446477 eV Core-core repulsion = 23817.574797 eV Total energy + Delta-G solvation = -3917.871681 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.25268 -40.05191 -38.43378 -37.27033 -34.84323 -34.40231 -33.29721 -32.76301 -30.37458 -30.23071 -29.97783 -27.42755 -26.15523 -24.26907 -23.33362 -22.90829 -22.24845 -20.62977 -19.89762 -19.74185 -18.58822 -17.82898 -17.19105 -16.66755 -16.26342 -16.23358 -15.48524 -15.21520 -14.99887 -14.78574 -14.26092 -14.18607 -13.98637 -13.83083 -13.33438 -13.19500 -13.08111 -12.91747 -12.89253 -12.68332 -12.51884 -11.96195 -11.77742 -11.69273 -11.37158 -11.33677 -11.23558 -10.81228 -10.57492 -10.37118 -10.28127 -10.11030 -10.10007 -9.82076 -9.40101 -9.22268 -8.91921 -8.38836 -8.21185 -7.30374 -5.99796 -4.03520 1.99847 2.13982 2.17614 2.39040 2.99713 3.16314 3.31977 3.39424 3.44695 3.64463 3.92154 4.03042 4.20754 4.42699 4.48584 4.62642 4.71127 4.78057 4.96634 5.06922 5.17965 5.26061 5.32051 5.34195 5.37788 5.47420 5.50053 5.63137 5.66095 5.80406 6.01417 6.13451 6.23107 6.27120 6.33819 6.64530 6.74874 6.86612 7.00645 7.07617 7.23697 7.28256 7.57189 7.79072 7.81246 7.83082 7.92998 7.96361 8.37352 8.49707 9.02179 9.59961 11.09804 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.029611 B = 0.002098 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.365143 B =13345.816533 C =13447.225817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.103 4.103 3 C 0.536 3.464 4 N -0.852 5.852 5 O -0.536 6.536 6 C -0.106 4.106 7 C 0.096 3.904 8 N -0.638 5.638 9 C 0.722 3.278 10 O -0.570 6.570 11 N -0.677 5.677 12 C 0.120 3.880 13 C -0.144 4.144 14 C -0.108 4.108 15 C -0.044 4.044 16 C 0.048 3.952 17 C -0.508 4.508 18 H 0.058 0.942 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.895 3.105 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.109 4.109 26 C -0.116 4.116 27 C 0.142 3.858 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.402 0.598 32 H 0.404 0.596 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.401 0.599 38 H 0.113 0.887 39 H 0.122 0.878 40 H 0.028 0.972 41 H 0.029 0.971 42 H 0.261 0.739 43 H 0.121 0.879 44 H 0.129 0.871 45 H 0.081 0.919 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.964 9.307 -14.767 32.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 C 0.320 3.680 4 N -0.415 5.415 5 O -0.411 6.411 6 C -0.144 4.144 7 C -0.027 4.027 8 N -0.377 5.377 9 C 0.425 3.575 10 O -0.447 6.447 11 N -0.324 5.324 12 C 0.027 3.973 13 C -0.164 4.164 14 C -0.127 4.127 15 C -0.044 4.044 16 C 0.011 3.989 17 C -0.547 4.547 18 H 0.076 0.924 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.128 4.128 26 C -0.136 4.136 27 C 0.018 3.982 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.230 0.770 32 H 0.235 0.765 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.236 0.764 38 H 0.131 0.869 39 H 0.140 0.860 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.071 0.929 43 H 0.139 0.861 44 H 0.147 0.853 45 H 0.099 0.901 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -26.406 9.408 -14.356 31.494 hybrid contribution 0.357 -0.709 -0.291 0.845 sum -26.049 8.699 -14.647 31.125 Atomic orbital electron populations 1.21724 0.90664 1.03732 1.03053 1.22059 0.97671 0.92608 0.98391 1.20103 0.80072 0.86755 0.81063 1.43815 1.51529 1.16100 1.30073 1.90747 1.34917 1.78344 1.37120 1.22586 0.94970 0.99585 0.97300 1.22071 0.99088 1.01377 0.80161 1.47503 1.11854 1.72153 1.06218 1.15373 0.79528 0.78075 0.84554 1.90942 1.81809 1.59784 1.12121 1.42422 1.08887 1.71032 1.10014 1.17318 0.85335 1.02419 0.92233 1.20724 0.91428 1.03865 1.00425 1.20859 0.97852 1.00132 0.93852 1.20704 0.96055 0.92620 0.95055 1.18349 0.89867 0.97242 0.93467 1.21115 1.13765 0.98824 1.20970 0.92408 1.25025 0.96695 0.97607 0.95142 1.69970 1.23098 1.36315 1.23995 0.86488 0.78752 0.84418 0.78106 1.19686 1.20991 1.20983 1.21006 0.91780 1.00195 0.99780 1.21138 0.99750 0.99239 0.93513 1.22105 0.82484 0.97974 0.95644 0.90587 0.91629 0.91208 0.76971 0.76531 0.88543 0.89419 0.90795 0.91181 0.76408 0.86919 0.86030 0.95342 0.95313 0.92947 0.86138 0.85290 0.90087 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.39 8.58 37.16 0.32 -0.07 16 2 C -0.10 -0.62 0.81 -153.39 -0.12 -0.74 16 3 C 0.54 4.51 6.71 -10.98 -0.07 4.44 16 4 N -0.85 -4.60 8.72 31.22 0.27 -4.32 16 5 O -0.54 -6.67 16.42 5.55 0.09 -6.58 16 6 C -0.11 -0.63 5.61 -24.89 -0.14 -0.77 16 7 C 0.10 0.77 5.85 -3.06 -0.02 0.75 16 8 N -0.64 -6.86 3.31 -176.10 -0.58 -7.44 16 9 C 0.72 10.77 8.33 -86.92 -0.72 10.04 16 10 O -0.57 -10.55 14.03 5.29 0.07 -10.48 16 11 N -0.68 -9.68 5.29 -14.23 -0.08 -9.76 16 12 C 0.12 2.12 6.30 -83.69 -0.53 1.59 16 13 C -0.14 -2.50 9.97 -39.39 -0.39 -2.90 16 14 C -0.11 -2.18 9.69 -39.61 -0.38 -2.56 16 15 C -0.04 -0.99 5.07 -104.59 -0.53 -1.52 16 16 C 0.05 1.26 5.10 -29.04 -0.15 1.11 16 17 C -0.51 -14.47 9.09 -34.44 -0.31 -14.79 16 18 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 21 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C -0.11 -2.31 9.69 -39.61 -0.38 -2.70 16 26 C -0.12 -2.27 8.70 -39.40 -0.34 -2.61 16 27 C 0.14 1.13 5.84 -2.41 -0.01 1.12 16 28 H 0.08 0.15 8.07 -51.93 -0.42 -0.27 16 29 H 0.06 0.11 7.37 -51.93 -0.38 -0.27 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.40 1.09 8.06 -40.82 -0.33 0.76 16 32 H 0.40 2.00 8.93 -40.82 -0.36 1.63 16 33 H 0.10 0.64 7.41 -51.93 -0.38 0.25 16 34 H 0.09 0.34 8.04 -51.93 -0.42 -0.08 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.40 4.46 7.82 -40.82 -0.32 4.14 16 38 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.12 2.33 8.06 -52.48 -0.42 1.91 16 40 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 41 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 44 H 0.13 2.52 6.22 -52.49 -0.33 2.20 16 45 H 0.08 0.54 7.99 -51.93 -0.41 0.12 16 46 H 0.08 0.72 7.91 -51.93 -0.41 0.31 16 LS Contribution 381.36 15.07 5.75 5.75 Total: -1.00 -36.86 381.36 -9.34 -46.20 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.69 Total: 4.01 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -3.89 Total: -8.09 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 0.35 Total: -47.60 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: 0.17 Total: -17.06 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.86 -9.34 -46.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932567119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.982 kcal (2) G-P(sol) polarization free energy of solvation -36.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds