Wall clock time and date at job start Tue Mar 31 2020 17:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 110.88346 * 2 1 4 4 N 1.34777 * 120.00193 * 56.12260 * 3 2 1 5 5 O 1.21286 * 120.00304 * 236.12546 * 3 2 1 6 6 C 1.55155 * 111.00271 * 236.12445 * 2 1 3 7 7 C 1.54330 * 102.94038 * 206.38276 * 6 2 1 8 8 N 1.47021 * 107.27055 * 22.19173 * 7 6 2 9 9 C 1.34771 * 125.64895 * 181.02484 * 8 7 6 10 10 O 1.21581 * 120.00108 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99852 * 0.29722 * 9 8 7 12 12 C 1.39945 * 120.00102 * 175.10022 * 11 9 8 13 13 C 1.38873 * 120.06895 * 214.81555 * 12 11 9 14 14 C 1.38114 * 119.92560 * 179.74739 * 13 12 11 15 15 C 1.38286 * 120.07319 * 0.52372 * 14 13 12 16 16 C 1.50693 * 119.93100 * 179.72145 * 15 14 13 17 17 C 1.50697 * 109.47362 * 270.02812 * 16 15 14 18 18 H 1.08000 * 120.00331 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99958 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00042 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99964 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47038 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47202 * 119.99681 * 21 19 17 24 24 H 1.48499 * 109.46931 * 240.00052 * 21 19 17 25 25 C 1.38289 * 120.13547 * 359.75403 * 15 14 13 26 26 C 1.38108 * 120.06988 * 359.97045 * 25 15 14 27 27 C 1.47429 * 108.70313 * 1.28611 * 8 7 6 28 28 H 1.09003 * 109.46907 * 183.87935 * 1 2 3 29 29 H 1.09001 * 109.47104 * 303.87691 * 1 2 3 30 30 H 1.08998 * 109.47600 * 63.88134 * 1 2 3 31 31 H 0.97002 * 119.99715 * 359.97438 * 4 3 2 32 32 H 0.96998 * 120.00205 * 179.97438 * 4 3 2 33 33 H 1.09001 * 110.72051 * 88.01851 * 6 2 1 34 34 H 1.08999 * 110.87511 * 324.81642 * 6 2 1 35 35 H 1.09005 * 109.87992 * 262.77230 * 7 6 2 36 36 H 1.08999 * 109.87815 * 141.61290 * 7 6 2 37 37 H 0.97000 * 120.00475 * 355.10442 * 11 9 8 38 38 H 1.07991 * 120.03368 * 0.02562 * 13 12 11 39 39 H 1.08006 * 119.96552 * 180.27791 * 14 13 12 40 40 H 1.08995 * 109.47014 * 30.02735 * 16 15 14 41 41 H 1.09004 * 109.46867 * 150.02915 * 16 15 14 42 42 H 0.97001 * 120.00053 * 179.97438 * 20 19 17 43 43 H 1.08000 * 119.95764 * 179.97438 * 25 15 14 44 44 H 1.08001 * 120.03095 * 180.02562 * 26 25 15 45 45 H 1.09000 * 110.36338 * 94.47916 * 27 8 7 46 46 H 1.08997 * 110.36413 * 216.80771 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0672 1.4080 0.0000 4 7 1.6996 2.2696 0.9690 5 8 2.8304 1.7660 -0.8720 6 6 2.0861 -0.8074 -1.2026 7 6 3.4679 -1.2729 -0.6970 8 7 3.4281 -1.2421 0.7724 9 6 4.4491 -1.5602 1.5926 10 8 4.3023 -1.4987 2.7980 11 7 5.6345 -1.9411 1.0767 12 6 6.7244 -2.1723 1.9235 13 6 8.0103 -1.8572 1.5043 14 6 9.0833 -2.0817 2.3444 15 6 8.8794 -2.6296 3.5976 16 6 10.0531 -2.8790 4.5093 17 6 10.5919 -4.2653 4.2667 18 1 10.1303 -4.9023 3.5267 19 6 11.6735 -4.7209 4.9903 20 7 12.2347 -3.9459 5.8924 21 14 12.3419 -6.4391 4.6891 22 1 11.5395 -7.1039 3.6311 23 1 13.7588 -6.3499 4.2539 24 1 12.2581 -7.2297 5.9434 25 6 7.6006 -2.9498 4.0157 26 6 6.5229 -2.7224 3.1824 27 6 2.0844 -0.8118 1.2000 28 1 -0.3633 -1.0254 0.0695 29 1 -0.3633 0.5728 0.8532 30 1 -0.3634 0.4524 -0.9227 31 1 1.0889 1.9835 1.6663 32 1 2.0456 3.1758 0.9692 33 1 2.1914 -0.1691 -2.0799 34 1 1.4482 -1.6630 -1.4242 35 1 4.2425 -0.5980 -1.0611 36 1 3.6659 -2.2880 -1.0413 37 1 5.7322 -2.0550 0.1183 38 1 8.1706 -1.4329 0.5242 39 1 10.0832 -1.8327 2.0208 40 1 10.8331 -2.1454 4.3062 41 1 9.7321 -2.7904 5.5472 42 1 12.9954 -4.2665 6.4018 43 1 7.4447 -3.3780 4.9948 44 1 5.5245 -2.9723 3.5097 45 1 1.4538 -1.6784 1.3984 46 1 2.1524 -0.1801 2.0857 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932567119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:32 Heat of formation + Delta-G solvation = -69.674261 kcal Electronic energy + Delta-G solvation = -27736.593782 eV Core-core repulsion = 23817.574797 eV Total energy + Delta-G solvation = -3919.018985 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.08961 -41.07625 -39.73854 -38.18542 -36.28997 -35.18075 -34.87052 -33.78061 -32.05839 -31.77140 -30.59770 -28.72359 -27.30772 -25.30811 -24.55646 -23.92839 -23.70144 -22.12983 -20.98572 -20.44109 -19.53425 -18.71788 -18.49404 -17.86946 -17.61402 -17.12618 -16.85602 -16.47202 -16.01768 -15.93277 -15.82949 -15.27017 -14.81403 -14.62142 -14.52326 -14.29952 -14.27685 -14.11632 -13.88489 -13.63473 -13.47079 -13.28496 -13.19616 -13.13094 -12.63586 -12.45825 -12.29573 -12.17206 -12.06797 -11.78785 -11.68752 -11.55019 -11.25807 -10.94730 -10.89253 -10.68007 -10.60135 -9.80848 -9.76885 -8.85091 -8.17578 -6.32178 0.46966 0.57222 1.38364 1.40197 1.40600 1.54418 1.55506 1.97453 2.40848 2.52230 2.80213 3.00314 3.11532 3.26041 3.48819 3.77693 4.03458 4.06001 4.15648 4.22071 4.31863 4.38357 4.44425 4.57371 4.63550 4.65621 4.68983 4.73643 4.86096 4.91329 4.95562 5.11510 5.12832 5.16341 5.30714 5.33578 5.35959 5.43566 5.48929 5.61115 5.76461 5.83798 5.90939 6.08123 6.12943 6.25921 6.39744 6.75438 6.80622 7.28180 7.36008 7.36954 8.90664 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.029611 B = 0.002098 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.365143 B =13345.816533 C =13447.225817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.092 4.092 3 C 0.526 3.474 4 N -0.840 5.840 5 O -0.583 6.583 6 C -0.101 4.101 7 C 0.089 3.911 8 N -0.633 5.633 9 C 0.715 3.285 10 O -0.612 6.612 11 N -0.668 5.668 12 C 0.134 3.866 13 C -0.130 4.130 14 C -0.112 4.112 15 C -0.075 4.075 16 C 0.057 3.943 17 C -0.525 4.525 18 H 0.055 0.945 19 C 0.001 3.999 20 N -0.931 5.931 21 Si 0.968 3.032 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.277 1.277 25 C -0.119 4.119 26 C -0.121 4.121 27 C 0.134 3.866 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.415 0.585 32 H 0.406 0.594 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.419 0.581 38 H 0.154 0.846 39 H 0.127 0.873 40 H 0.007 0.993 41 H 0.000 1.000 42 H 0.265 0.735 43 H 0.112 0.888 44 H 0.128 0.872 45 H 0.102 0.898 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.215 8.505 -17.219 34.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.096 4.096 3 C 0.311 3.689 4 N -0.403 5.403 5 O -0.463 6.463 6 C -0.139 4.139 7 C -0.033 4.033 8 N -0.370 5.370 9 C 0.417 3.583 10 O -0.492 6.492 11 N -0.316 5.316 12 C 0.040 3.960 13 C -0.151 4.151 14 C -0.131 4.131 15 C -0.075 4.075 16 C 0.020 3.980 17 C -0.563 4.563 18 H 0.074 0.926 19 C -0.196 4.196 20 N -0.572 5.572 21 Si 0.792 3.208 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.203 1.203 25 C -0.137 4.137 26 C -0.141 4.141 27 C 0.011 3.989 28 H 0.111 0.889 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.247 0.753 32 H 0.237 0.763 33 H 0.109 0.891 34 H 0.135 0.865 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.257 0.743 38 H 0.171 0.829 39 H 0.145 0.855 40 H 0.025 0.975 41 H 0.018 0.982 42 H 0.074 0.926 43 H 0.130 0.870 44 H 0.146 0.854 45 H 0.120 0.880 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -28.731 8.626 -16.840 34.402 hybrid contribution 0.920 -0.337 0.437 1.072 sum -27.811 8.289 -16.404 33.335 Atomic orbital electron populations 1.21775 0.87874 1.05236 1.03942 1.22036 0.99591 0.90592 0.97381 1.20643 0.79514 0.87983 0.80764 1.43783 1.50956 1.15953 1.29601 1.90725 1.37106 1.79402 1.39024 1.22638 0.94115 1.00418 0.96765 1.22301 1.00282 1.02437 0.78263 1.47563 1.11733 1.70492 1.07240 1.15565 0.80145 0.78106 0.84443 1.90915 1.82595 1.61546 1.14120 1.42265 1.08049 1.70784 1.10515 1.17387 0.86580 1.00262 0.91783 1.20981 0.90212 1.02436 1.01444 1.20950 0.99166 0.99762 0.93180 1.20412 0.95077 0.95991 0.96044 1.18089 0.90831 0.96163 0.92871 1.21408 1.14138 0.99732 1.21010 0.92630 1.25965 0.96918 1.02058 0.94699 1.70095 1.23676 1.38469 1.24911 0.85358 0.78225 0.78957 0.78274 1.18853 1.20026 1.20300 1.20938 0.91949 1.00860 0.99997 1.21127 0.98936 0.99739 0.94336 1.22385 0.81434 0.98933 0.96100 0.88858 0.90289 0.90789 0.75328 0.76305 0.89147 0.86505 0.92079 0.89071 0.74295 0.82882 0.85505 0.97514 0.98178 0.92594 0.86996 0.85378 0.87996 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.30 8.58 71.98 0.62 0.32 16 2 C -0.09 -0.86 0.81 -51.46 -0.04 -0.91 16 3 C 0.53 8.13 6.71 87.66 0.59 8.72 16 4 N -0.84 -7.92 8.72 -173.53 -1.51 -9.44 16 5 O -0.58 -14.20 16.42 -3.05 -0.05 -14.25 16 6 C -0.10 -0.90 5.61 31.78 0.18 -0.73 16 7 C 0.09 1.20 5.85 86.73 0.51 1.71 16 8 N -0.63 -12.33 3.31 -829.32 -2.74 -15.07 16 9 C 0.71 20.32 8.33 179.06 1.49 21.81 16 10 O -0.61 -22.40 14.03 -3.97 -0.06 -22.46 16 11 N -0.67 -17.75 5.29 -317.18 -1.68 -19.43 16 12 C 0.13 4.56 6.30 38.15 0.24 4.80 16 13 C -0.13 -4.28 9.97 22.39 0.22 -4.06 16 14 C -0.11 -4.49 9.69 22.25 0.22 -4.27 16 15 C -0.07 -3.50 5.07 -19.84 -0.10 -3.60 16 16 C 0.06 3.20 5.10 29.10 0.15 3.35 16 17 C -0.52 -30.78 9.09 25.60 0.23 -30.55 16 18 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 19 C 0.00 0.08 5.46 84.66 0.46 0.54 16 20 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 21 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 22 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 C -0.12 -5.23 9.69 22.25 0.22 -5.01 16 26 C -0.12 -4.75 8.70 22.39 0.19 -4.56 16 27 C 0.13 1.83 5.84 86.93 0.51 2.34 16 28 H 0.09 -0.04 8.07 -2.39 -0.02 -0.06 16 29 H 0.08 -0.01 7.37 -2.39 -0.02 -0.03 16 30 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.42 1.48 8.06 -92.71 -0.75 0.74 16 32 H 0.41 3.65 8.93 -92.71 -0.83 2.82 16 33 H 0.09 1.00 7.41 -2.39 -0.02 0.98 16 34 H 0.12 0.38 8.04 -2.39 -0.02 0.37 16 35 H 0.06 1.00 8.14 -2.38 -0.02 0.99 16 36 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.42 8.10 7.82 -92.71 -0.72 7.38 16 38 H 0.15 3.79 8.06 -2.92 -0.02 3.76 16 39 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 40 H 0.01 0.38 8.08 -2.39 -0.02 0.37 16 41 H 0.00 -0.01 8.08 -2.39 -0.02 -0.03 16 42 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 43 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 44 H 0.13 5.07 6.22 -2.91 -0.02 5.05 16 45 H 0.10 1.02 7.99 -2.39 -0.02 1.00 16 46 H 0.07 1.15 7.91 -2.39 -0.02 1.13 16 Total: -1.00 -83.17 381.36 0.68 -82.48 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -1.27 Total: 18.13 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: 5.68 Total: -10.09 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -5.65 Total: -100.99 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -0.11 Total: -36.71 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -83.17 0.68 -82.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932567119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.809 kcal (2) G-P(sol) polarization free energy of solvation -83.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds