Wall clock time and date at job start Tue Mar 31 2020 17:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 110.29169 * 2 1 4 4 N 1.34777 * 120.00156 * 300.70328 * 3 2 1 5 5 O 1.21281 * 119.99958 * 120.69745 * 3 2 1 6 6 C 1.54624 * 110.32947 * 122.13415 * 2 1 3 7 7 C 1.55116 * 102.75756 * 97.20628 * 6 2 1 8 8 N 1.48115 * 103.31287 * 37.26691 * 7 6 2 9 9 C 1.34782 * 127.03178 * 140.72504 * 8 7 6 10 10 O 1.21587 * 119.99911 * 180.02562 * 9 8 7 11 11 N 1.34773 * 119.99860 * 0.04789 * 9 8 7 12 12 C 1.39949 * 120.00179 * 175.38114 * 11 9 8 13 13 C 1.38865 * 120.07115 * 214.81480 * 12 11 9 14 14 C 1.38109 * 119.92716 * 179.76783 * 13 12 11 15 15 C 1.38281 * 120.07394 * 0.50476 * 14 13 12 16 16 C 1.50694 * 119.93234 * 179.77076 * 15 14 13 17 17 C 1.50703 * 109.47199 * 269.97480 * 16 15 14 18 18 H 1.08001 * 119.99344 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00038 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99822 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00025 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47436 * 90.00112 * 21 19 17 23 23 H 1.48503 * 109.46913 * 209.99673 * 21 19 17 24 24 H 1.48499 * 109.47355 * 329.99429 * 21 19 17 25 25 C 1.38280 * 120.13823 * 359.73994 * 15 14 13 26 26 C 1.38123 * 120.06853 * 0.02562 * 25 15 14 27 27 C 1.47483 * 105.93777 * 320.76154 * 8 7 6 28 28 H 1.09001 * 109.46846 * 59.29984 * 1 2 3 29 29 H 1.08999 * 109.46913 * 179.29995 * 1 2 3 30 30 H 1.09000 * 109.47308 * 299.29848 * 1 2 3 31 31 H 0.97008 * 119.99631 * 359.97438 * 4 3 2 32 32 H 0.96997 * 120.00417 * 179.71951 * 4 3 2 33 33 H 1.08997 * 110.74026 * 215.48655 * 6 2 1 34 34 H 1.08996 * 110.73844 * 338.80980 * 6 2 1 35 35 H 1.08998 * 110.58511 * 278.82770 * 7 6 2 36 36 H 1.09002 * 110.81875 * 155.81653 * 7 6 2 37 37 H 0.97000 * 120.00018 * 355.37632 * 11 9 8 38 38 H 1.08003 * 120.03265 * 359.97438 * 13 12 11 39 39 H 1.08003 * 119.96326 * 180.25454 * 14 13 12 40 40 H 1.09004 * 109.47338 * 29.97514 * 16 15 14 41 41 H 1.09002 * 109.47004 * 149.97666 * 16 15 14 42 42 H 0.96993 * 119.99789 * 179.97438 * 20 19 17 43 43 H 1.07996 * 119.96898 * 179.97438 * 25 15 14 44 44 H 1.07997 * 120.03071 * 180.02562 * 26 25 15 45 45 H 1.08998 * 109.91384 * 266.09028 * 27 8 7 46 46 H 1.08997 * 109.91418 * 144.80517 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0526 1.4135 0.0000 4 7 1.7273 2.2522 -1.0036 5 8 2.7658 1.7963 0.9032 6 6 2.0671 -0.7712 1.2278 7 6 2.3641 -2.1780 0.6456 8 7 2.8825 -1.8835 -0.7103 9 6 3.8948 -2.5068 -1.3454 10 8 4.2166 -2.1580 -2.4648 11 7 4.5499 -3.5170 -0.7397 12 6 5.5355 -4.2277 -1.4341 13 6 5.7027 -5.5875 -1.2074 14 6 6.6730 -6.2869 -1.8977 15 6 7.4846 -5.6326 -2.8062 16 6 8.5458 -6.3979 -3.5540 17 6 9.8317 -6.3713 -2.7685 18 1 9.8758 -5.8525 -1.8223 19 6 10.9514 -7.0102 -3.2574 20 7 12.0737 -6.9866 -2.5722 21 14 10.8747 -7.9081 -4.8937 22 1 11.2351 -6.9726 -5.9891 23 1 11.8299 -9.0451 -4.8796 24 1 9.4984 -8.4207 -5.1131 25 6 7.3240 -4.2776 -3.0305 26 6 6.3521 -3.5734 -2.3469 27 6 2.0650 -0.7681 -1.2229 28 1 -0.3633 0.5247 -0.8837 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3634 0.5029 0.8962 31 1 1.1571 1.9459 -1.7261 32 1 2.0604 3.1632 -1.0015 33 1 2.9795 -0.3093 1.6049 34 1 1.3100 -0.8273 2.0099 35 1 1.4505 -2.7696 0.5880 36 1 3.1173 -2.6929 1.2419 37 1 4.3383 -3.7514 0.1774 38 1 5.0723 -6.0982 -0.4944 39 1 6.8008 -7.3453 -1.7249 40 1 8.2230 -7.4304 -3.6877 41 1 8.7061 -5.9381 -4.5292 42 1 12.8613 -7.4364 -2.9160 43 1 7.9596 -3.7692 -3.7404 44 1 6.2269 -2.5152 -2.5228 45 1 1.2331 -1.1569 -1.8102 46 1 2.6794 -0.1087 -1.8359 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932567120.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:37 Heat of formation + Delta-G solvation = -36.235380 kcal Electronic energy + Delta-G solvation = -27584.644466 eV Core-core repulsion = 23667.075500 eV Total energy + Delta-G solvation = -3917.568966 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.25191 -40.13879 -38.56817 -37.43253 -34.92338 -34.39917 -33.26563 -32.70167 -30.69508 -30.30617 -29.91668 -27.65720 -26.50685 -24.67590 -22.97481 -22.77498 -22.32523 -20.58308 -19.88211 -19.73764 -18.73021 -17.70769 -17.03481 -16.90796 -16.73012 -16.38696 -15.60264 -15.29543 -14.98239 -14.76324 -14.58062 -14.16803 -14.06709 -13.68146 -13.51049 -13.22374 -13.11413 -12.95325 -12.79124 -12.56676 -12.42183 -12.27806 -12.07913 -11.66846 -11.62487 -11.44047 -11.28606 -10.85197 -10.46941 -10.37740 -10.26738 -10.15881 -10.13442 -9.86868 -9.52727 -9.29529 -9.03460 -8.54934 -8.29015 -7.37001 -6.03987 -4.02693 1.89728 2.05505 2.13220 2.31688 2.96960 3.10768 3.31786 3.39188 3.42421 3.65333 3.81111 4.03223 4.22243 4.44794 4.47693 4.48760 4.62106 4.75518 4.91908 5.02221 5.12961 5.23283 5.26762 5.27747 5.34164 5.42382 5.48048 5.57635 5.64934 5.79025 5.90943 6.00787 6.12397 6.16560 6.30250 6.56924 6.64162 6.82104 6.87704 6.99969 7.00332 7.08428 7.14186 7.63653 7.65402 7.75528 7.76473 7.78228 8.43616 8.53700 9.01800 9.56508 11.08990 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.028120 B = 0.002076 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.487281 B =13485.827410 C =13693.972021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 C 0.533 3.467 4 N -0.853 5.853 5 O -0.535 6.535 6 C -0.116 4.116 7 C 0.098 3.902 8 N -0.639 5.639 9 C 0.725 3.275 10 O -0.569 6.569 11 N -0.677 5.677 12 C 0.124 3.876 13 C -0.143 4.143 14 C -0.106 4.106 15 C -0.039 4.039 16 C 0.014 3.986 17 C -0.511 4.511 18 H 0.074 0.926 19 C 0.068 3.932 20 N -0.901 5.901 21 Si 0.878 3.122 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.265 1.265 25 C -0.106 4.106 26 C -0.115 4.115 27 C 0.139 3.861 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.402 0.598 32 H 0.404 0.596 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.401 0.599 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.028 0.972 41 H 0.023 0.977 42 H 0.264 0.736 43 H 0.122 0.878 44 H 0.131 0.869 45 H 0.078 0.922 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.177 14.028 6.351 32.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 C 0.316 3.684 4 N -0.416 5.416 5 O -0.410 6.410 6 C -0.155 4.155 7 C -0.025 4.025 8 N -0.378 5.378 9 C 0.428 3.572 10 O -0.445 6.445 11 N -0.325 5.325 12 C 0.031 3.969 13 C -0.163 4.163 14 C -0.124 4.124 15 C -0.040 4.040 16 C -0.023 4.023 17 C -0.549 4.549 18 H 0.092 0.908 19 C -0.134 4.134 20 N -0.539 5.539 21 Si 0.705 3.295 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.189 1.189 25 C -0.124 4.124 26 C -0.136 4.136 27 C 0.015 3.985 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.235 0.765 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.237 0.763 38 H 0.133 0.867 39 H 0.141 0.859 40 H 0.046 0.954 41 H 0.042 0.958 42 H 0.073 0.927 43 H 0.140 0.860 44 H 0.148 0.852 45 H 0.096 0.904 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -28.250 14.258 6.131 32.233 hybrid contribution -0.158 -0.313 -0.630 0.721 sum -28.408 13.945 5.501 32.121 Atomic orbital electron populations 1.21879 0.90922 1.03618 1.02929 1.21757 0.97857 0.92544 0.98232 1.20243 0.79487 0.87172 0.81466 1.43844 1.54973 1.16218 1.26584 1.90759 1.36830 1.77312 1.36144 1.22807 1.03451 0.93741 0.95477 1.22604 0.99549 0.97303 0.83017 1.47758 1.34785 1.37069 1.18192 1.15307 0.78429 0.79754 0.83690 1.90950 1.68101 1.67035 1.18378 1.42424 1.39118 1.34716 1.16219 1.17319 0.91022 0.90393 0.98173 1.20698 1.01215 0.91627 1.02800 1.20823 0.95183 0.99930 0.96488 1.20292 0.94510 0.93947 0.95241 1.18804 0.93159 0.94933 0.95381 1.20949 0.92395 1.34244 1.07302 0.90802 1.25008 0.95237 0.95911 0.97205 1.69904 1.01313 1.44039 1.38677 0.86800 0.78314 0.79819 0.84551 1.20181 1.21318 1.18916 1.20987 0.97267 0.94071 1.00123 1.21154 0.94397 1.00506 0.97502 1.21848 0.94701 0.87921 0.94067 0.91676 0.90683 0.91339 0.76923 0.76534 0.88602 0.89168 0.90466 0.90032 0.76349 0.86741 0.85917 0.95422 0.95838 0.92657 0.86033 0.85165 0.90359 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.40 8.11 37.16 0.30 -0.10 16 2 C -0.10 -0.59 0.80 -154.28 -0.12 -0.72 16 3 C 0.53 4.31 6.58 -10.99 -0.07 4.24 16 4 N -0.85 -3.91 8.67 31.22 0.27 -3.63 16 5 O -0.53 -6.74 16.27 5.56 0.09 -6.65 16 6 C -0.12 -0.74 5.98 -24.76 -0.15 -0.89 16 7 C 0.10 0.62 6.98 -2.03 -0.01 0.60 16 8 N -0.64 -6.38 3.29 -175.37 -0.58 -6.96 16 9 C 0.73 10.33 8.39 -86.92 -0.73 9.60 16 10 O -0.57 -10.31 14.12 5.29 0.07 -10.23 16 11 N -0.68 -9.08 5.31 -14.22 -0.08 -9.15 16 12 C 0.12 2.09 6.30 -83.69 -0.53 1.56 16 13 C -0.14 -2.33 9.97 -39.40 -0.39 -2.73 16 14 C -0.11 -2.01 9.69 -39.61 -0.38 -2.40 16 15 C -0.04 -0.85 5.07 -104.59 -0.53 -1.38 16 16 C 0.01 0.35 4.17 -29.04 -0.12 0.23 16 17 C -0.51 -14.67 9.65 -34.44 -0.33 -15.00 16 18 H 0.07 2.32 7.98 -52.49 -0.42 1.90 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 20 N -0.90 -27.85 13.96 55.43 0.77 -27.07 16 21 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 25 C -0.11 -2.18 9.69 -39.61 -0.38 -2.56 16 26 C -0.12 -2.20 8.70 -39.39 -0.34 -2.55 16 27 C 0.14 1.08 6.24 -2.98 -0.02 1.06 16 28 H 0.06 0.10 7.58 -51.93 -0.39 -0.29 16 29 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.40 0.73 8.26 -40.82 -0.34 0.40 16 32 H 0.40 1.61 8.93 -40.82 -0.36 1.25 16 33 H 0.10 0.87 6.89 -51.93 -0.36 0.51 16 34 H 0.09 0.39 7.85 -51.93 -0.41 -0.02 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.45 6.77 -51.93 -0.35 0.09 16 37 H 0.40 3.99 7.13 -40.82 -0.29 3.69 16 38 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 39 H 0.12 2.20 8.06 -52.48 -0.42 1.78 16 40 H 0.03 0.66 7.14 -51.93 -0.37 0.29 16 41 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 43 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 44 H 0.13 2.53 6.22 -52.49 -0.33 2.20 16 45 H 0.08 0.48 7.68 -51.93 -0.40 0.08 16 46 H 0.08 0.76 7.53 -51.93 -0.39 0.37 16 LS Contribution 376.00 15.07 5.67 5.67 Total: -1.00 -37.91 376.00 -8.87 -46.77 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.50 Total: 3.43 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -3.92 Total: -9.13 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.39 Total: -46.82 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: 0.17 Total: -16.88 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.91 -8.87 -46.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932567120.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.536 kcal (2) G-P(sol) polarization free energy of solvation -37.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds