Wall clock time and date at job start Tue Mar 31 2020 17:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 110.29169 * 2 1 4 4 N 1.34777 * 120.00156 * 300.70328 * 3 2 1 5 5 O 1.21281 * 119.99958 * 120.69745 * 3 2 1 6 6 C 1.54624 * 110.32947 * 122.13415 * 2 1 3 7 7 C 1.55116 * 102.75756 * 97.20628 * 6 2 1 8 8 N 1.48115 * 103.31287 * 37.26691 * 7 6 2 9 9 C 1.34782 * 127.03178 * 140.72504 * 8 7 6 10 10 O 1.21587 * 119.99911 * 180.02562 * 9 8 7 11 11 N 1.34773 * 119.99860 * 0.04789 * 9 8 7 12 12 C 1.39949 * 120.00179 * 175.38114 * 11 9 8 13 13 C 1.38865 * 120.07115 * 214.81480 * 12 11 9 14 14 C 1.38109 * 119.92716 * 179.76783 * 13 12 11 15 15 C 1.38281 * 120.07394 * 0.50476 * 14 13 12 16 16 C 1.50694 * 119.93234 * 179.77076 * 15 14 13 17 17 C 1.50703 * 109.47199 * 269.97480 * 16 15 14 18 18 H 1.08001 * 119.99344 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00038 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99822 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00025 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47436 * 90.00112 * 21 19 17 23 23 H 1.48503 * 109.46913 * 209.99673 * 21 19 17 24 24 H 1.48499 * 109.47355 * 329.99429 * 21 19 17 25 25 C 1.38280 * 120.13823 * 359.73994 * 15 14 13 26 26 C 1.38123 * 120.06853 * 0.02562 * 25 15 14 27 27 C 1.47483 * 105.93777 * 320.76154 * 8 7 6 28 28 H 1.09001 * 109.46846 * 59.29984 * 1 2 3 29 29 H 1.08999 * 109.46913 * 179.29995 * 1 2 3 30 30 H 1.09000 * 109.47308 * 299.29848 * 1 2 3 31 31 H 0.97008 * 119.99631 * 359.97438 * 4 3 2 32 32 H 0.96997 * 120.00417 * 179.71951 * 4 3 2 33 33 H 1.08997 * 110.74026 * 215.48655 * 6 2 1 34 34 H 1.08996 * 110.73844 * 338.80980 * 6 2 1 35 35 H 1.08998 * 110.58511 * 278.82770 * 7 6 2 36 36 H 1.09002 * 110.81875 * 155.81653 * 7 6 2 37 37 H 0.97000 * 120.00018 * 355.37632 * 11 9 8 38 38 H 1.08003 * 120.03265 * 359.97438 * 13 12 11 39 39 H 1.08003 * 119.96326 * 180.25454 * 14 13 12 40 40 H 1.09004 * 109.47338 * 29.97514 * 16 15 14 41 41 H 1.09002 * 109.47004 * 149.97666 * 16 15 14 42 42 H 0.96993 * 119.99789 * 179.97438 * 20 19 17 43 43 H 1.07996 * 119.96898 * 179.97438 * 25 15 14 44 44 H 1.07997 * 120.03071 * 180.02562 * 26 25 15 45 45 H 1.08998 * 109.91384 * 266.09028 * 27 8 7 46 46 H 1.08997 * 109.91418 * 144.80517 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0526 1.4135 0.0000 4 7 1.7273 2.2522 -1.0036 5 8 2.7658 1.7963 0.9032 6 6 2.0671 -0.7712 1.2278 7 6 2.3641 -2.1780 0.6456 8 7 2.8825 -1.8835 -0.7103 9 6 3.8948 -2.5068 -1.3454 10 8 4.2166 -2.1580 -2.4648 11 7 4.5499 -3.5170 -0.7397 12 6 5.5355 -4.2277 -1.4341 13 6 5.7027 -5.5875 -1.2074 14 6 6.6730 -6.2869 -1.8977 15 6 7.4846 -5.6326 -2.8062 16 6 8.5458 -6.3979 -3.5540 17 6 9.8317 -6.3713 -2.7685 18 1 9.8758 -5.8525 -1.8223 19 6 10.9514 -7.0102 -3.2574 20 7 12.0737 -6.9866 -2.5722 21 14 10.8747 -7.9081 -4.8937 22 1 11.2351 -6.9726 -5.9891 23 1 11.8299 -9.0451 -4.8796 24 1 9.4984 -8.4207 -5.1131 25 6 7.3240 -4.2776 -3.0305 26 6 6.3521 -3.5734 -2.3469 27 6 2.0650 -0.7681 -1.2229 28 1 -0.3633 0.5247 -0.8837 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3634 0.5029 0.8962 31 1 1.1571 1.9459 -1.7261 32 1 2.0604 3.1632 -1.0015 33 1 2.9795 -0.3093 1.6049 34 1 1.3100 -0.8273 2.0099 35 1 1.4505 -2.7696 0.5880 36 1 3.1173 -2.6929 1.2419 37 1 4.3383 -3.7514 0.1774 38 1 5.0723 -6.0982 -0.4944 39 1 6.8008 -7.3453 -1.7249 40 1 8.2230 -7.4304 -3.6877 41 1 8.7061 -5.9381 -4.5292 42 1 12.8613 -7.4364 -2.9160 43 1 7.9596 -3.7692 -3.7404 44 1 6.2269 -2.5152 -2.5228 45 1 1.2331 -1.1569 -1.8102 46 1 2.6794 -0.1087 -1.8359 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932567120.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:36 Heat of formation + Delta-G solvation = -64.694102 kcal Electronic energy + Delta-G solvation = -27585.878529 eV Core-core repulsion = 23667.075500 eV Total energy + Delta-G solvation = -3918.803029 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.05275 -41.10843 -39.78244 -38.33606 -36.29835 -35.13458 -34.84047 -33.74447 -32.36854 -31.77178 -30.46966 -29.00239 -27.39721 -25.52499 -24.42203 -23.81219 -23.52209 -22.03632 -21.02495 -20.35677 -19.61474 -18.94987 -18.52755 -17.92746 -17.51596 -17.21398 -16.81622 -16.42722 -16.24083 -15.93594 -15.65307 -15.36241 -15.10682 -14.85409 -14.56959 -14.36154 -14.28348 -13.93861 -13.87261 -13.57293 -13.51754 -13.37270 -13.20112 -13.01708 -12.59998 -12.50817 -12.25099 -12.08677 -11.86902 -11.82075 -11.72225 -11.62788 -11.27000 -11.00209 -10.93752 -10.77325 -10.71372 -9.86105 -9.76200 -8.81023 -8.28256 -6.33068 0.46229 0.57600 1.32372 1.38114 1.39028 1.51522 1.56102 1.97444 2.36779 2.50608 2.80766 2.98652 3.05875 3.27448 3.48399 3.80690 4.03520 4.06801 4.15514 4.16847 4.30933 4.32527 4.45041 4.53647 4.60117 4.65316 4.69578 4.71081 4.83547 4.91201 4.96085 5.06497 5.08257 5.11924 5.19782 5.27551 5.34671 5.41766 5.43750 5.57186 5.63966 5.83614 5.91640 6.01326 6.17132 6.30878 6.38401 6.73049 6.77193 7.26809 7.30073 7.37690 8.88191 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.028120 B = 0.002076 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.487281 B =13485.827410 C =13693.972021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.089 4.089 3 C 0.524 3.476 4 N -0.836 5.836 5 O -0.589 6.589 6 C -0.116 4.116 7 C 0.096 3.904 8 N -0.637 5.637 9 C 0.718 3.282 10 O -0.615 6.615 11 N -0.667 5.667 12 C 0.136 3.864 13 C -0.128 4.128 14 C -0.110 4.110 15 C -0.074 4.074 16 C 0.021 3.979 17 C -0.517 4.517 18 H 0.028 0.972 19 C 0.006 3.994 20 N -0.949 5.949 21 Si 0.951 3.049 22 H -0.269 1.269 23 H -0.281 1.281 24 H -0.243 1.243 25 C -0.120 4.120 26 C -0.128 4.128 27 C 0.134 3.866 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.417 0.583 32 H 0.407 0.593 33 H 0.062 0.938 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.420 0.580 38 H 0.160 0.840 39 H 0.134 0.866 40 H 0.037 0.963 41 H 0.025 0.975 42 H 0.267 0.733 43 H 0.113 0.887 44 H 0.121 0.879 45 H 0.103 0.897 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.092 13.011 6.415 36.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.093 4.093 3 C 0.309 3.691 4 N -0.400 5.400 5 O -0.469 6.469 6 C -0.155 4.155 7 C -0.025 4.025 8 N -0.374 5.374 9 C 0.421 3.579 10 O -0.495 6.495 11 N -0.316 5.316 12 C 0.042 3.958 13 C -0.148 4.148 14 C -0.129 4.129 15 C -0.075 4.075 16 C -0.016 4.016 17 C -0.555 4.555 18 H 0.046 0.954 19 C -0.191 4.191 20 N -0.590 5.590 21 Si 0.774 3.226 22 H -0.194 1.194 23 H -0.207 1.207 24 H -0.167 1.167 25 C -0.138 4.138 26 C -0.148 4.148 27 C 0.011 3.989 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.249 0.751 32 H 0.238 0.762 33 H 0.081 0.919 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.259 0.741 38 H 0.178 0.822 39 H 0.152 0.848 40 H 0.055 0.945 41 H 0.043 0.957 42 H 0.076 0.924 43 H 0.131 0.869 44 H 0.139 0.861 45 H 0.121 0.879 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -32.259 13.269 6.217 35.432 hybrid contribution 0.960 0.179 -0.527 1.110 sum -31.299 13.449 5.690 34.538 Atomic orbital electron populations 1.21919 0.87922 1.05094 1.03978 1.21737 0.99923 0.90568 0.97076 1.20741 0.78826 0.88365 0.81210 1.43764 1.54126 1.16063 1.26011 1.90739 1.39322 1.78476 1.38349 1.22801 1.02839 0.93529 0.96283 1.22933 1.01061 0.97699 0.80854 1.47811 1.33458 1.36670 1.19455 1.15503 0.79121 0.79875 0.83451 1.90921 1.69587 1.68353 1.20604 1.42241 1.38129 1.34322 1.16879 1.17404 0.90554 0.90918 0.96928 1.21016 1.00351 0.91115 1.02346 1.21028 0.95244 1.00686 0.95936 1.20177 0.95625 0.94309 0.97346 1.18649 0.91968 0.95888 0.95083 1.21169 0.94838 1.33396 1.06131 0.95382 1.25999 0.94587 0.96934 1.01597 1.70062 1.02329 1.45553 1.41055 0.85642 0.79450 0.78479 0.79015 1.19402 1.20705 1.16661 1.20965 0.98013 0.94068 1.00787 1.21132 0.94929 1.00177 0.98607 1.22071 0.94698 0.87301 0.94868 0.90005 0.88976 0.91014 0.75115 0.76162 0.91897 0.86562 0.87114 0.89157 0.74061 0.82226 0.84822 0.94516 0.95695 0.92402 0.86907 0.86070 0.87855 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.27 8.11 71.98 0.58 0.31 16 2 C -0.09 -0.86 0.80 -52.04 -0.04 -0.91 16 3 C 0.52 8.15 6.58 87.66 0.58 8.72 16 4 N -0.84 -6.81 8.67 -173.53 -1.50 -8.32 16 5 O -0.59 -15.22 16.27 -3.03 -0.05 -15.27 16 6 C -0.12 -1.22 5.98 31.87 0.19 -1.03 16 7 C 0.10 0.89 6.98 86.79 0.61 1.49 16 8 N -0.64 -11.42 3.29 -826.99 -2.72 -14.15 16 9 C 0.72 19.60 8.39 179.05 1.50 21.10 16 10 O -0.61 -22.41 14.12 -3.99 -0.06 -22.47 16 11 N -0.67 -16.50 5.31 -317.18 -1.68 -18.18 16 12 C 0.14 4.42 6.30 38.15 0.24 4.66 16 13 C -0.13 -3.85 9.97 22.39 0.22 -3.63 16 14 C -0.11 -4.08 9.69 22.25 0.22 -3.87 16 15 C -0.07 -3.24 5.07 -19.85 -0.10 -3.34 16 16 C 0.02 1.05 4.17 29.10 0.12 1.17 16 17 C -0.52 -30.71 9.65 25.60 0.25 -30.46 16 18 H 0.03 1.86 7.98 -2.91 -0.02 1.84 16 19 C 0.01 0.33 5.47 84.65 0.46 0.80 16 20 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 21 Si 0.95 44.77 27.47 68.60 1.88 46.65 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 23 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 24 H -0.24 -10.53 6.54 99.48 0.65 -9.88 16 25 C -0.12 -5.10 9.69 22.25 0.22 -4.88 16 26 C -0.13 -4.98 8.70 22.39 0.19 -4.79 16 27 C 0.13 1.82 6.24 86.53 0.54 2.36 16 28 H 0.08 -0.08 7.58 -2.39 -0.02 -0.10 16 29 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.42 0.75 8.26 -92.70 -0.77 -0.01 16 32 H 0.41 3.02 8.93 -92.71 -0.83 2.19 16 33 H 0.06 1.13 6.89 -2.39 -0.02 1.11 16 34 H 0.12 0.62 7.85 -2.39 -0.02 0.60 16 35 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.09 0.69 6.77 -2.39 -0.02 0.67 16 37 H 0.42 7.01 7.13 -92.71 -0.66 6.35 16 38 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 39 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 40 H 0.04 1.72 7.14 -2.39 -0.02 1.70 16 41 H 0.02 1.20 7.51 -2.39 -0.02 1.18 16 42 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 43 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 44 H 0.12 4.91 6.22 -2.91 -0.02 4.90 16 45 H 0.10 0.92 7.68 -2.39 -0.02 0.90 16 46 H 0.06 1.08 7.53 -2.39 -0.02 1.06 16 Total: -1.00 -88.01 376.00 0.67 -87.33 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -1.27 Total: 16.90 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 5.78 Total: -12.29 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -5.61 Total: -100.85 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -0.11 Total: -37.74 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.65 kcal Total: -88.01 0.67 -87.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932567120.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.637 kcal (2) G-P(sol) polarization free energy of solvation -88.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds