Wall clock time and date at job start Tue Mar 31 2020 17:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37999 * 120.82541 * 2 1 4 4 C 1.39119 * 119.26866 * 180.26840 * 3 2 1 5 5 O 1.35497 * 119.52715 * 179.69483 * 4 3 2 6 6 N 1.32434 * 120.94997 * 359.72392 * 4 3 2 7 7 C 1.31642 * 121.79806 * 359.97438 * 6 4 3 8 8 C 1.39557 * 120.62495 * 0.02562 * 7 6 4 9 9 C 1.47625 * 120.49757 * 179.97438 * 8 7 6 10 10 O 1.21576 * 119.99847 * 173.91639 * 9 8 7 11 11 N 1.34770 * 119.99889 * 353.91254 * 9 8 7 12 12 C 1.46499 * 120.00115 * 179.97438 * 11 9 8 13 13 C 1.53952 * 113.58255 * 155.00064 * 12 11 9 14 14 C 1.52913 * 86.78084 * 89.87296 * 13 12 11 15 15 C 1.52913 * 121.13431 * 259.18282 * 14 13 12 16 16 C 1.53955 * 86.78022 * 209.37824 * 15 14 13 17 17 N 1.46498 * 113.58103 * 139.33322 * 16 15 14 18 18 C 1.36937 * 119.99707 * 107.27828 * 17 16 15 19 19 H 1.07998 * 120.00151 * 0.02562 * 18 17 16 20 20 C 1.38820 * 119.99852 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99798 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99794 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47309 * 59.99650 * 22 20 18 24 24 H 1.48497 * 109.46995 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47141 * 299.99544 * 22 20 18 26 26 C 1.52910 * 121.13765 * 150.62106 * 14 13 12 27 27 C 1.52906 * 88.04205 * 24.89831 * 14 13 12 28 28 H 1.08991 * 109.47157 * 263.92256 * 1 2 3 29 29 H 1.09000 * 109.46568 * 23.92585 * 1 2 3 30 30 H 1.08996 * 109.46883 * 143.92078 * 1 2 3 31 31 H 1.08008 * 120.36249 * 359.96835 * 3 2 1 32 32 H 0.96702 * 114.00651 * 270.02508 * 5 4 3 33 33 H 1.08000 * 119.68317 * 179.97438 * 7 6 4 34 34 H 0.97001 * 120.00274 * 359.97438 * 11 9 8 35 35 H 1.09007 * 112.87539 * 23.86354 * 12 11 9 36 36 H 1.08996 * 113.65911 * 335.40082 * 13 12 11 37 37 H 1.09003 * 113.66201 * 204.34462 * 13 12 11 38 38 H 1.08995 * 113.65878 * 323.84777 * 15 14 13 39 39 H 1.08995 * 113.66334 * 94.91019 * 15 14 13 40 40 H 1.09000 * 113.58290 * 270.13328 * 16 15 14 41 41 H 0.97003 * 120.00405 * 287.29104 * 17 16 15 42 42 H 0.97003 * 119.99581 * 180.02562 * 21 20 18 43 43 H 1.09007 * 113.66032 * 265.08808 * 26 14 13 44 44 H 1.08999 * 113.66085 * 36.05128 * 26 14 13 45 45 H 1.09008 * 113.65975 * 89.57335 * 27 14 13 46 46 H 1.09005 * 113.66485 * 220.62586 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1473 -0.0057 5 8 4.3043 2.3077 -0.0120 6 7 4.2548 -0.0066 -0.0056 7 6 3.6204 -1.1601 0.0003 8 6 2.2256 -1.2043 0.0062 9 6 1.5171 -2.4994 0.0123 10 8 0.3073 -2.5300 0.1290 11 7 2.2114 -3.6479 -0.1116 12 6 1.5084 -4.9332 -0.1050 13 6 2.2696 -6.0553 -0.8341 14 6 2.9272 -6.3654 0.5112 15 6 4.3441 -5.8855 0.8279 16 6 4.4675 -7.1235 1.7346 17 7 5.7721 -7.7845 1.6498 18 6 6.6616 -7.6793 2.6856 19 1 6.4011 -7.1094 3.5652 20 6 7.8981 -8.3051 2.6050 21 7 8.2152 -9.0000 1.5331 22 14 9.1111 -8.1621 4.0183 23 1 8.5037 -8.7251 5.2509 24 1 10.3473 -8.9155 3.6877 25 1 9.4464 -6.7326 4.2401 26 6 3.3856 -7.7820 0.8594 27 6 1.7097 -5.7386 1.1914 28 1 -0.3633 -0.1088 1.0218 29 1 -0.3632 0.9394 -0.4168 30 1 -0.3633 -0.8305 -0.6052 31 1 1.6936 2.1314 -0.0005 32 1 4.5034 2.6422 -0.8972 33 1 4.1849 -2.0808 -0.0002 34 1 3.1765 -3.6235 -0.2051 35 1 0.4646 -4.8468 -0.4071 36 1 2.9672 -5.6919 -1.5886 37 1 1.6253 -6.8544 -1.2006 38 1 5.0145 -5.9040 -0.0313 39 1 4.3750 -4.9408 1.3708 40 1 4.1487 -6.9454 2.7616 41 1 6.0060 -8.2965 0.8598 42 1 9.0791 -9.4377 1.4770 43 1 2.6506 -8.3523 1.4275 44 1 3.7851 -8.3340 0.0086 45 1 0.9080 -6.4488 1.3942 46 1 1.9599 -5.1223 2.0550 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965033366.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:47 Heat of formation + Delta-G solvation = 18.252100 kcal Electronic energy + Delta-G solvation = -27805.827466 eV Core-core repulsion = 23890.621254 eV Total energy + Delta-G solvation = -3915.206212 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.32364 -40.50457 -39.11343 -37.37092 -35.94430 -34.28488 -33.55072 -32.47359 -30.67613 -29.53342 -28.26020 -25.80555 -25.28660 -24.89849 -24.18715 -23.04000 -22.12448 -21.13842 -19.89613 -18.83019 -18.17626 -17.95388 -17.29190 -17.04822 -16.24814 -16.02080 -15.44297 -15.21423 -15.10252 -14.75739 -14.31496 -14.13745 -13.84686 -13.64305 -13.33669 -13.16683 -12.97714 -12.91986 -12.71966 -12.57667 -12.38201 -12.08754 -12.03021 -11.67820 -11.32014 -11.02587 -10.86372 -10.76661 -10.30078 -10.24815 -10.01331 -9.98904 -9.85340 -9.76438 -9.65483 -9.44232 -9.36815 -9.07245 -8.85898 -6.96686 -5.78790 -3.07350 0.15874 0.75331 2.47041 2.86256 3.10942 3.40119 3.43556 3.48222 3.48940 4.09902 4.25046 4.34174 4.53318 4.56089 4.61182 4.67332 4.75482 4.80462 4.87922 5.06037 5.20848 5.32114 5.34817 5.40882 5.45245 5.59066 5.63948 5.74464 5.79259 5.81340 5.91176 5.92922 5.96157 6.01817 6.10916 6.16959 6.22300 6.32804 6.37169 6.47271 6.58201 6.90823 7.00838 7.10630 7.28604 7.42504 7.68901 7.95554 8.40154 9.51204 10.09526 10.43758 11.43567 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011779 B = 0.002771 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.567463 B =10101.549609 C =12004.316522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.035 3.965 3 C -0.200 4.200 4 C 0.337 3.663 5 O -0.480 6.480 6 N -0.508 5.508 7 C 0.170 3.830 8 C -0.206 4.206 9 C 0.568 3.432 10 O -0.532 6.532 11 N -0.701 5.701 12 C 0.122 3.878 13 C -0.132 4.132 14 C -0.106 4.106 15 C -0.146 4.146 16 C 0.170 3.830 17 N -0.713 5.713 18 C -0.244 4.244 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.138 4.138 27 C -0.126 4.126 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.147 0.853 32 H 0.405 0.595 33 H 0.166 0.834 34 H 0.403 0.597 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.091 0.909 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.625 18.334 -8.163 26.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.027 3.973 3 C -0.221 4.221 4 C 0.160 3.840 5 O -0.288 6.288 6 N -0.227 5.227 7 C 0.011 3.989 8 C -0.211 4.211 9 C 0.356 3.644 10 O -0.410 6.410 11 N -0.352 5.352 12 C 0.017 3.983 13 C -0.170 4.170 14 C -0.107 4.107 15 C -0.187 4.187 16 C 0.058 3.942 17 N -0.351 5.351 18 C -0.375 4.375 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.178 4.178 27 C -0.164 4.164 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.119 0.881 31 H 0.165 0.835 32 H 0.264 0.736 33 H 0.183 0.817 34 H 0.239 0.761 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.098 0.902 45 H 0.109 0.891 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.468 18.342 -7.315 25.713 hybrid contribution 0.721 0.033 0.019 0.722 sum -15.747 18.376 -7.296 25.276 Atomic orbital electron populations 1.21114 0.88619 1.03714 1.04422 1.20366 0.97682 0.90572 0.88713 1.21999 0.93707 0.99597 1.06802 1.19405 0.87096 0.85288 0.92260 1.84722 1.75985 1.34023 1.34108 1.67205 1.41967 0.98219 1.15305 1.22803 0.90271 0.95434 0.90441 1.20885 0.95072 0.94532 1.10660 1.17847 0.86897 0.83274 0.76427 1.90730 1.13471 1.87098 1.49746 1.45634 1.10972 1.05163 1.73435 1.21900 0.96945 0.81645 0.97785 1.23165 0.99403 0.97303 0.97156 1.22378 0.94652 0.98581 0.95046 1.23638 0.92686 1.00680 1.01672 1.21497 0.86150 0.90937 0.95613 1.42412 1.12290 1.59809 1.20544 1.19261 0.95094 1.26513 0.96636 0.91205 1.24754 0.98060 1.00318 0.97722 1.69649 1.22640 1.37804 1.28033 0.86279 0.80745 0.77486 0.81761 1.21254 1.21686 1.21203 1.23279 0.99232 0.94644 1.00601 1.23129 0.97633 0.98623 0.97031 0.89655 0.91686 0.88054 0.83489 0.73624 0.81725 0.76109 0.88093 0.90988 0.88813 0.90088 0.92823 0.90874 0.78114 0.93424 0.92228 0.90238 0.89092 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 8.83 36.00 0.32 -0.70 16 2 C 0.03 0.33 5.95 -103.96 -0.62 -0.29 16 3 C -0.20 -1.68 9.70 -39.34 -0.38 -2.06 16 4 C 0.34 3.34 7.74 -16.97 -0.13 3.21 16 5 O -0.48 -3.96 13.55 -18.18 -0.25 -4.21 16 6 N -0.51 -5.90 10.37 -12.97 -0.13 -6.03 16 7 C 0.17 1.76 10.69 -17.14 -0.18 1.58 16 8 C -0.21 -2.15 5.89 -104.82 -0.62 -2.77 16 9 C 0.57 6.53 7.71 -12.43 -0.10 6.43 16 10 O -0.53 -7.19 13.10 5.30 0.07 -7.12 16 11 N -0.70 -7.32 5.21 -53.86 -0.28 -7.60 16 12 C 0.12 1.31 4.32 -66.95 -0.29 1.03 16 13 C -0.13 -1.41 7.59 -26.28 -0.20 -1.61 16 14 C -0.11 -1.37 1.02 -154.71 -0.16 -1.52 16 15 C -0.15 -2.28 6.97 -26.28 -0.18 -2.47 16 16 C 0.17 3.25 4.48 -66.94 -0.30 2.95 16 17 N -0.71 -17.51 5.40 -52.47 -0.28 -17.79 16 18 C -0.24 -6.70 9.97 -15.06 -0.15 -6.85 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 22 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 C -0.14 -2.16 7.59 -26.28 -0.20 -2.36 16 27 C -0.13 -1.46 7.64 -26.28 -0.20 -1.67 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.38 8.06 -51.93 -0.42 -0.03 16 30 H 0.10 1.00 5.96 -51.93 -0.31 0.69 16 31 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 32 H 0.40 1.18 9.06 45.56 0.41 1.59 16 33 H 0.17 1.42 6.46 -52.49 -0.34 1.08 16 34 H 0.40 3.80 6.10 -40.82 -0.25 3.55 16 35 H 0.10 1.12 7.47 -51.92 -0.39 0.73 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.05 0.80 8.09 -51.93 -0.42 0.38 16 40 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 41 H 0.38 10.04 7.92 -40.82 -0.32 9.71 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 44 H 0.08 1.29 8.12 -51.93 -0.42 0.87 16 45 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 46 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 379.68 15.07 5.72 5.72 Total: -1.00 -33.56 379.68 -8.74 -42.30 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -5.80 Total: 12.23 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -3.49 Total: -7.56 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 0.03 Total: -58.66 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.18 Total: -11.33 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.56 -8.74 -42.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965033366.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.555 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds