Wall clock time and date at job start Tue Mar 31 2020 17:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37999 * 120.82541 * 2 1 4 4 C 1.39119 * 119.26866 * 180.26840 * 3 2 1 5 5 O 1.35497 * 119.52715 * 179.69483 * 4 3 2 6 6 N 1.32434 * 120.94997 * 359.72392 * 4 3 2 7 7 C 1.31642 * 121.79806 * 359.97438 * 6 4 3 8 8 C 1.39557 * 120.62495 * 0.02562 * 7 6 4 9 9 C 1.47625 * 120.49757 * 179.97438 * 8 7 6 10 10 O 1.21576 * 119.99847 * 173.91639 * 9 8 7 11 11 N 1.34770 * 119.99889 * 353.91254 * 9 8 7 12 12 C 1.46499 * 120.00115 * 179.97438 * 11 9 8 13 13 C 1.53952 * 113.58255 * 155.00064 * 12 11 9 14 14 C 1.52913 * 86.78084 * 89.87296 * 13 12 11 15 15 C 1.52913 * 121.13431 * 259.18282 * 14 13 12 16 16 C 1.53955 * 86.78022 * 209.37824 * 15 14 13 17 17 N 1.46498 * 113.58103 * 139.33322 * 16 15 14 18 18 C 1.36937 * 119.99707 * 107.27828 * 17 16 15 19 19 H 1.07998 * 120.00151 * 0.02562 * 18 17 16 20 20 C 1.38820 * 119.99852 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99798 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99794 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47309 * 59.99650 * 22 20 18 24 24 H 1.48497 * 109.46995 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47141 * 299.99544 * 22 20 18 26 26 C 1.52910 * 121.13765 * 150.62106 * 14 13 12 27 27 C 1.52906 * 88.04205 * 24.89831 * 14 13 12 28 28 H 1.08991 * 109.47157 * 263.92256 * 1 2 3 29 29 H 1.09000 * 109.46568 * 23.92585 * 1 2 3 30 30 H 1.08996 * 109.46883 * 143.92078 * 1 2 3 31 31 H 1.08008 * 120.36249 * 359.96835 * 3 2 1 32 32 H 0.96702 * 114.00651 * 270.02508 * 5 4 3 33 33 H 1.08000 * 119.68317 * 179.97438 * 7 6 4 34 34 H 0.97001 * 120.00274 * 359.97438 * 11 9 8 35 35 H 1.09007 * 112.87539 * 23.86354 * 12 11 9 36 36 H 1.08996 * 113.65911 * 335.40082 * 13 12 11 37 37 H 1.09003 * 113.66201 * 204.34462 * 13 12 11 38 38 H 1.08995 * 113.65878 * 323.84777 * 15 14 13 39 39 H 1.08995 * 113.66334 * 94.91019 * 15 14 13 40 40 H 1.09000 * 113.58290 * 270.13328 * 16 15 14 41 41 H 0.97003 * 120.00405 * 287.29104 * 17 16 15 42 42 H 0.97003 * 119.99581 * 180.02562 * 21 20 18 43 43 H 1.09007 * 113.66032 * 265.08808 * 26 14 13 44 44 H 1.08999 * 113.66085 * 36.05128 * 26 14 13 45 45 H 1.09008 * 113.65975 * 89.57335 * 27 14 13 46 46 H 1.09005 * 113.66485 * 220.62586 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1473 -0.0057 5 8 4.3043 2.3077 -0.0120 6 7 4.2548 -0.0066 -0.0056 7 6 3.6204 -1.1601 0.0003 8 6 2.2256 -1.2043 0.0062 9 6 1.5171 -2.4994 0.0123 10 8 0.3073 -2.5300 0.1290 11 7 2.2114 -3.6479 -0.1116 12 6 1.5084 -4.9332 -0.1050 13 6 2.2696 -6.0553 -0.8341 14 6 2.9272 -6.3654 0.5112 15 6 4.3441 -5.8855 0.8279 16 6 4.4675 -7.1235 1.7346 17 7 5.7721 -7.7845 1.6498 18 6 6.6616 -7.6793 2.6856 19 1 6.4011 -7.1094 3.5652 20 6 7.8981 -8.3051 2.6050 21 7 8.2152 -9.0000 1.5331 22 14 9.1111 -8.1621 4.0183 23 1 8.5037 -8.7251 5.2509 24 1 10.3473 -8.9155 3.6877 25 1 9.4464 -6.7326 4.2401 26 6 3.3856 -7.7820 0.8594 27 6 1.7097 -5.7386 1.1914 28 1 -0.3633 -0.1088 1.0218 29 1 -0.3632 0.9394 -0.4168 30 1 -0.3633 -0.8305 -0.6052 31 1 1.6936 2.1314 -0.0005 32 1 4.5034 2.6422 -0.8972 33 1 4.1849 -2.0808 -0.0002 34 1 3.1765 -3.6235 -0.2051 35 1 0.4646 -4.8468 -0.4071 36 1 2.9672 -5.6919 -1.5886 37 1 1.6253 -6.8544 -1.2006 38 1 5.0145 -5.9040 -0.0313 39 1 4.3750 -4.9408 1.3708 40 1 4.1487 -6.9454 2.7616 41 1 6.0060 -8.2965 0.8598 42 1 9.0791 -9.4377 1.4770 43 1 2.6506 -8.3523 1.4275 44 1 3.7851 -8.3340 0.0086 45 1 0.9080 -6.4488 1.3942 46 1 1.9599 -5.1223 2.0550 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000965033366.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:46 Heat of formation + Delta-G solvation = -7.320619 kcal Electronic energy + Delta-G solvation = -27806.936383 eV Core-core repulsion = 23890.621254 eV Total energy + Delta-G solvation = -3916.315128 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.14987 -41.47031 -40.04301 -38.07188 -37.22577 -35.35291 -34.76559 -33.78741 -31.79224 -31.05683 -28.94911 -26.73097 -26.56463 -26.22713 -25.52112 -24.05361 -23.08947 -22.08090 -21.17610 -19.51242 -19.39053 -18.97191 -18.74041 -18.04499 -17.00334 -16.89484 -16.85055 -16.21109 -16.09291 -15.87395 -15.74692 -15.23101 -15.15059 -14.71253 -14.37777 -14.03391 -13.93642 -13.77480 -13.61485 -13.60396 -13.36129 -13.26549 -12.98783 -12.92592 -12.80053 -12.71440 -12.38508 -12.21450 -12.10061 -11.81441 -11.21116 -11.06401 -11.00308 -10.82928 -10.72405 -10.64116 -10.47329 -10.18650 -9.93561 -8.95642 -7.94108 -5.21492 -0.57592 0.04505 1.47052 1.49322 1.55390 1.66274 2.03435 2.45350 2.56812 2.65729 3.37321 3.40525 3.54111 3.55811 3.59208 3.61439 3.71238 3.87472 3.92879 4.00394 4.16281 4.31669 4.37055 4.41309 4.58178 4.63500 4.64521 4.67409 4.76997 4.88342 4.90789 4.93481 4.99907 5.04465 5.05049 5.12854 5.15155 5.24300 5.29118 5.43908 5.45302 5.55502 5.66101 5.76301 6.28832 6.43496 6.50758 6.75081 7.10039 7.34642 8.13430 8.35690 9.29012 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011779 B = 0.002771 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.567463 B =10101.549609 C =12004.316522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.029 3.971 3 C -0.190 4.190 4 C 0.332 3.668 5 O -0.489 6.489 6 N -0.538 5.538 7 C 0.166 3.834 8 C -0.217 4.217 9 C 0.569 3.431 10 O -0.555 6.555 11 N -0.698 5.698 12 C 0.127 3.873 13 C -0.120 4.120 14 C -0.093 4.093 15 C -0.134 4.134 16 C 0.145 3.855 17 N -0.728 5.728 18 C -0.243 4.243 19 H 0.073 0.927 20 C -0.075 4.075 21 N -0.969 5.969 22 Si 0.969 3.031 23 H -0.279 1.279 24 H -0.296 1.296 25 H -0.279 1.279 26 C -0.129 4.129 27 C -0.123 4.123 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.176 0.824 32 H 0.426 0.574 33 H 0.174 0.826 34 H 0.407 0.593 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.374 0.626 42 H 0.251 0.749 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.107 0.893 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.101 19.966 -8.328 28.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.021 3.979 3 C -0.211 4.211 4 C 0.154 3.846 5 O -0.300 6.300 6 N -0.258 5.258 7 C 0.007 3.993 8 C -0.223 4.223 9 C 0.357 3.643 10 O -0.435 6.435 11 N -0.349 5.349 12 C 0.022 3.978 13 C -0.158 4.158 14 C -0.093 4.093 15 C -0.175 4.175 16 C 0.036 3.964 17 N -0.365 5.365 18 C -0.375 4.375 19 H 0.091 0.909 20 C -0.267 4.267 21 N -0.620 5.620 22 Si 0.798 3.202 23 H -0.205 1.205 24 H -0.222 1.222 25 H -0.205 1.205 26 C -0.168 4.168 27 C -0.161 4.161 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.193 0.807 32 H 0.289 0.711 33 H 0.191 0.809 34 H 0.244 0.756 35 H 0.122 0.878 36 H 0.095 0.905 37 H 0.130 0.870 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.206 0.794 42 H 0.059 0.941 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.125 0.875 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.981 20.019 -7.485 27.930 hybrid contribution 1.122 -0.389 0.075 1.190 sum -16.859 19.629 -7.410 26.916 Atomic orbital electron populations 1.21072 0.87787 1.04490 1.04004 1.20612 0.98353 0.90622 0.88350 1.22209 0.93080 1.00370 1.05438 1.19639 0.87842 0.85253 0.91821 1.84674 1.75883 1.33309 1.36157 1.67204 1.42967 0.99057 1.16591 1.22927 0.90394 0.95634 0.90372 1.20871 0.95141 0.94521 1.11742 1.17991 0.86641 0.83733 0.75899 1.90722 1.14360 1.87446 1.50933 1.45630 1.11211 1.05003 1.73016 1.21847 0.97195 0.81626 0.97097 1.23156 0.99226 0.97599 0.95813 1.22211 0.93682 0.95909 0.97512 1.23376 0.94596 0.99204 1.00318 1.21903 0.84890 0.93119 0.96501 1.42587 1.13901 1.60553 1.19500 1.19640 0.95546 1.25149 0.97152 0.90905 1.25518 1.00015 1.01020 1.00192 1.69799 1.22812 1.39432 1.29972 0.85278 0.78315 0.77500 0.79096 1.20527 1.22178 1.20510 1.23150 0.97950 0.96183 0.99542 1.23183 0.97125 0.98781 0.97011 0.90051 0.89022 0.89666 0.80664 0.71116 0.80875 0.75573 0.87764 0.90482 0.86952 0.91045 0.92191 0.91661 0.79429 0.94052 0.91265 0.90874 0.87518 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.75 8.83 71.23 0.63 -1.12 16 2 C 0.03 0.50 5.95 -19.43 -0.12 0.38 16 3 C -0.19 -2.78 9.70 22.42 0.22 -2.56 16 4 C 0.33 6.08 7.74 84.81 0.66 6.74 16 5 O -0.49 -7.21 13.55 -87.98 -1.19 -8.40 16 6 N -0.54 -12.09 10.37 -307.81 -3.19 -15.28 16 7 C 0.17 3.33 10.69 85.04 0.91 4.24 16 8 C -0.22 -4.34 5.89 -19.99 -0.12 -4.46 16 9 C 0.57 12.50 7.71 86.72 0.67 13.17 16 10 O -0.55 -14.45 13.10 -3.96 -0.05 -14.50 16 11 N -0.70 -13.60 5.21 -442.60 -2.30 -15.90 16 12 C 0.13 2.46 4.32 45.63 0.20 2.66 16 13 C -0.12 -2.25 7.59 30.89 0.23 -2.02 16 14 C -0.09 -2.23 1.02 -52.31 -0.05 -2.28 16 15 C -0.13 -4.13 6.97 30.89 0.22 -3.91 16 16 C 0.15 5.54 4.48 45.63 0.20 5.74 16 17 N -0.73 -36.36 5.40 -319.91 -1.73 -38.09 16 18 C -0.24 -13.51 9.97 84.04 0.84 -12.67 16 19 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 20 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 21 N -0.97 -59.34 13.06 21.65 0.28 -59.05 16 22 Si 0.97 46.37 29.55 68.60 2.03 48.40 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 25 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 26 C -0.13 -3.91 7.59 30.89 0.23 -3.67 16 27 C -0.12 -2.60 7.64 30.88 0.24 -2.36 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.09 0.83 8.06 -2.39 -0.02 0.81 16 30 H 0.08 1.59 5.96 -2.39 -0.01 1.57 16 31 H 0.18 1.47 8.06 -2.91 -0.02 1.44 16 32 H 0.43 1.68 9.06 -74.06 -0.67 1.01 16 33 H 0.17 2.91 6.46 -2.91 -0.02 2.90 16 34 H 0.41 7.17 6.10 -92.71 -0.57 6.60 16 35 H 0.10 2.05 7.47 -2.38 -0.02 2.03 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.06 1.74 8.09 -2.39 -0.02 1.73 16 40 H 0.07 2.56 8.10 -2.39 -0.02 2.54 16 41 H 0.37 20.02 7.92 -92.71 -0.73 19.28 16 42 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 43 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 44 H 0.07 2.32 8.12 -2.39 -0.02 2.30 16 45 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 46 H 0.06 1.45 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -72.70 379.68 -1.67 -74.37 By element: Atomic # 1 Polarization: 35.37 SS G_CDS: -0.93 Total: 34.44 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 5.42 Total: -5.99 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -6.94 Total: -128.32 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -1.24 Total: -22.90 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -72.70 -1.67 -74.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965033366.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.053 kcal (2) G-P(sol) polarization free energy of solvation -72.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds