Wall clock time and date at job start Tue Mar 31 2020 17:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38399 * 120.85512 * 2 1 4 4 C 1.38298 * 119.30821 * 179.97438 * 3 2 1 5 5 N 1.31963 * 121.08032 * 0.02562 * 4 3 2 6 6 C 1.31668 * 121.87885 * 359.68107 * 5 4 3 7 7 C 1.39562 * 120.56149 * 0.58327 * 6 5 4 8 8 C 1.47838 * 120.55709 * 179.73312 * 7 6 5 9 9 O 1.21547 * 120.00601 * 138.00650 * 8 7 6 10 10 N 1.34776 * 119.99712 * 317.99977 * 8 7 6 11 11 C 1.47488 * 125.66793 * 4.81336 * 10 8 7 12 12 C 1.55017 * 104.90029 * 204.04910 * 11 10 8 13 13 C 1.54523 * 101.52663 * 323.62130 * 12 11 10 14 14 C 1.47193 * 125.66386 * 184.85316 * 10 8 7 15 15 C 1.52110 * 109.89212 * 153.10392 * 13 12 11 16 16 N 1.47301 * 108.61136 * 72.25895 * 15 13 12 17 17 C 1.36940 * 121.07094 * 229.35259 * 16 15 13 18 18 H 1.07996 * 120.00222 * 152.41268 * 17 16 15 19 19 C 1.38809 * 119.99481 * 332.42091 * 17 16 15 20 20 N 1.31620 * 120.00395 * 348.98353 * 19 17 16 21 21 Si 1.86808 * 119.99716 * 168.98976 * 19 17 16 22 22 H 1.48502 * 109.46817 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46833 * 299.99402 * 21 19 17 24 24 H 1.48501 * 109.46835 * 59.99742 * 21 19 17 25 25 C 1.47165 * 117.86608 * 49.08446 * 16 15 13 26 26 C 1.53275 * 108.55495 * 309.12183 * 25 16 15 27 27 O 1.42067 * 110.33323 * 276.06671 * 13 12 11 28 28 H 1.08993 * 109.47402 * 270.31866 * 1 2 3 29 29 H 1.09001 * 109.47335 * 30.32528 * 1 2 3 30 30 H 1.09008 * 109.46581 * 150.32166 * 1 2 3 31 31 H 1.08000 * 120.34260 * 359.95023 * 3 2 1 32 32 H 1.08003 * 119.46701 * 179.97438 * 4 3 2 33 33 H 1.07999 * 119.71533 * 180.31368 * 6 5 4 34 34 H 1.08997 * 110.34918 * 322.90420 * 11 10 8 35 35 H 1.09003 * 110.35258 * 85.08294 * 11 10 8 36 36 H 1.09006 * 111.01337 * 205.56777 * 12 11 10 37 37 H 1.08999 * 111.01915 * 81.68628 * 12 11 10 38 38 H 1.09002 * 109.90960 * 59.09740 * 14 10 8 39 39 H 1.09006 * 109.90949 * 297.83482 * 14 10 8 40 40 H 1.08998 * 109.61941 * 312.43703 * 15 13 12 41 41 H 1.08996 * 109.51728 * 192.02520 * 15 13 12 42 42 H 0.96993 * 120.00085 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.62641 * 68.84581 * 25 16 15 44 44 H 1.08999 * 109.62759 * 189.40326 * 25 16 15 45 45 H 1.08998 * 109.51253 * 172.81420 * 26 25 16 46 46 H 1.08999 * 109.51317 * 292.96578 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5993 1.1508 0.0005 5 7 4.2498 0.0026 0.0005 6 6 3.6198 -1.1535 0.0063 7 6 2.2250 -1.2017 0.0004 8 6 1.5177 -2.4999 0.0009 9 8 0.5369 -2.6575 0.7013 10 7 1.9604 -3.5087 -0.7755 11 6 3.1877 -3.4897 -1.5933 12 6 2.9380 -4.5343 -2.7111 13 6 2.1423 -5.6178 -1.9490 14 6 1.2990 -4.8122 -0.9487 15 6 1.2468 -6.3780 -2.9154 16 7 2.0907 -7.2457 -3.7548 17 6 1.9575 -7.2566 -5.1177 18 1 2.8022 -7.5107 -5.7408 19 6 0.7369 -6.9408 -5.6982 20 7 -0.3420 -6.8437 -4.9506 21 14 0.6254 -6.6536 -7.5407 22 1 -0.7777 -6.3346 -7.9079 23 1 1.5066 -5.5199 -7.9191 24 1 1.0584 -7.8787 -8.2596 25 6 3.0857 -8.0963 -3.0822 26 6 3.9123 -7.2223 -2.1325 27 8 3.0293 -6.4966 -1.2713 28 1 -0.3634 0.0057 1.0276 29 1 -0.3634 0.8870 -0.5189 30 1 -0.3633 -0.8929 -0.5089 31 1 1.6965 2.1345 -0.0008 32 1 4.1558 2.0764 0.0001 33 1 4.1872 -2.0724 0.0112 34 1 3.3397 -2.5008 -2.0257 35 1 4.0495 -3.7757 -0.9904 36 1 3.8788 -4.9341 -3.0897 37 1 2.3431 -4.1080 -3.5188 38 1 0.2929 -4.6685 -1.3425 39 1 1.2552 -5.3360 0.0063 40 1 0.7055 -5.6720 -3.5452 41 1 0.5387 -6.9869 -2.3534 42 1 -1.1949 -6.6227 -5.3562 43 1 2.5772 -8.8751 -2.5138 44 1 3.7411 -8.5506 -3.8253 45 1 4.5672 -7.8546 -1.5330 46 1 4.5127 -6.5214 -2.7125 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972311956.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:25 Heat of formation + Delta-G solvation = -3.308705 kcal Electronic energy + Delta-G solvation = -29450.423245 eV Core-core repulsion = 25534.282086 eV Total energy + Delta-G solvation = -3916.141159 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.97927 -39.84702 -38.50640 -36.23839 -34.51186 -34.01947 -32.32349 -31.34762 -30.90633 -29.59008 -28.23983 -27.40177 -25.91604 -24.53677 -23.52126 -22.56559 -22.50931 -21.30488 -19.64030 -18.87920 -17.60697 -17.17933 -16.71642 -16.54827 -16.17017 -15.63496 -15.18280 -14.86026 -14.50011 -14.41603 -14.30523 -14.19071 -13.75312 -13.48333 -13.13352 -13.04240 -12.92097 -12.75780 -12.72924 -12.66697 -12.20674 -12.16327 -11.93534 -11.38529 -11.12373 -11.00330 -10.91179 -10.71994 -10.35502 -10.30776 -10.24345 -10.01948 -9.74015 -9.60747 -9.56643 -9.35923 -9.08270 -8.59903 -8.54980 -6.77849 -5.88648 -3.35448 0.56335 0.96106 2.69215 2.96164 3.30870 3.36989 3.37502 3.56557 4.10320 4.16871 4.36190 4.39363 4.45295 4.52542 4.78684 4.82482 4.97267 5.16306 5.22617 5.26841 5.32186 5.35851 5.46298 5.47918 5.52905 5.62946 5.64235 5.75558 5.81203 5.88278 5.92564 6.00266 6.07468 6.11202 6.22991 6.29731 6.35417 6.41969 6.47108 6.58626 6.74946 7.03673 7.42626 7.53143 7.64717 7.64942 7.86966 8.12414 8.28823 9.06415 9.68071 10.25641 11.19168 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014667 B = 0.003482 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.572167 B = 8038.604552 C = 8640.766529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.010 3.990 3 C -0.182 4.182 4 C 0.116 3.884 5 N -0.491 5.491 6 C 0.134 3.866 7 C -0.178 4.178 8 C 0.576 3.424 9 O -0.533 6.533 10 N -0.605 5.605 11 C 0.096 3.904 12 C -0.144 4.144 13 C 0.085 3.915 14 C 0.127 3.873 15 C 0.163 3.837 16 N -0.593 5.593 17 C -0.253 4.253 18 H 0.068 0.932 19 C 0.005 3.995 20 N -0.906 5.906 21 Si 0.906 3.094 22 H -0.289 1.289 23 H -0.283 1.283 24 H -0.282 1.282 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.377 6.377 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.141 0.859 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.029 0.971 42 H 0.256 0.744 43 H 0.027 0.973 44 H 0.063 0.937 45 H 0.083 0.917 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.904 13.201 8.454 17.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.002 3.998 3 C -0.202 4.202 4 C -0.040 4.040 5 N -0.200 5.200 6 C -0.024 4.024 7 C -0.183 4.183 8 C 0.364 3.636 9 O -0.410 6.410 10 N -0.338 5.338 11 C -0.027 4.027 12 C -0.182 4.182 13 C 0.043 3.957 14 C 0.005 3.995 15 C 0.036 3.964 16 N -0.317 5.317 17 C -0.383 4.383 18 H 0.086 0.914 19 C -0.194 4.194 20 N -0.550 5.550 21 Si 0.735 3.265 22 H -0.215 1.215 23 H -0.210 1.210 24 H -0.208 1.208 25 C -0.018 4.018 26 C -0.032 4.032 27 O -0.296 6.296 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.159 0.841 32 H 0.177 0.823 33 H 0.180 0.820 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.120 0.880 41 H 0.047 0.953 42 H 0.067 0.933 43 H 0.045 0.955 44 H 0.081 0.919 45 H 0.101 0.899 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.071 13.175 8.983 17.443 hybrid contribution -0.886 0.083 -1.274 1.554 sum 6.185 13.258 7.709 16.536 Atomic orbital electron populations 1.20913 0.89307 1.03531 1.03769 1.20405 0.97318 0.91351 0.90733 1.22013 0.95585 0.98526 1.04061 1.22940 0.91744 0.96448 0.92854 1.67732 1.40747 0.98248 1.13267 1.23162 0.90388 0.96743 0.92073 1.20858 0.95489 0.94148 1.07832 1.17624 0.83832 0.82499 0.79631 1.90788 1.26930 1.82354 1.40955 1.48494 1.25529 1.14830 1.44901 1.22605 0.86959 1.00323 0.92769 1.23208 1.02541 0.95515 0.96911 1.22600 0.91264 0.89770 0.92039 1.21833 0.96216 0.81524 0.99951 1.21168 0.90431 0.93829 0.90925 1.44022 1.40884 1.43970 1.02783 1.19131 0.94356 1.43617 0.81147 0.91428 1.25092 0.95018 1.01377 0.97909 1.69934 0.98573 1.52074 1.34444 0.86323 0.76790 0.78312 0.85043 1.21511 1.20958 1.20813 1.21597 0.92513 0.92857 0.94788 1.23115 0.92013 0.94673 0.93419 1.87675 1.50809 1.57360 1.33775 0.89564 0.91070 0.90215 0.84139 0.82328 0.82049 0.90910 0.91017 0.89183 0.89406 0.89421 0.90343 0.88025 0.95310 0.93336 0.95503 0.91902 0.89871 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 9.04 36.01 0.33 -0.95 16 2 C 0.01 0.12 5.94 -103.91 -0.62 -0.50 16 3 C -0.18 -1.66 9.81 -39.50 -0.39 -2.05 16 4 C 0.12 1.09 11.17 -17.47 -0.20 0.90 16 5 N -0.49 -5.81 10.35 -12.91 -0.13 -5.94 16 6 C 0.13 1.64 9.17 -17.13 -0.16 1.48 16 7 C -0.18 -2.37 5.38 -104.82 -0.56 -2.94 16 8 C 0.58 9.12 6.82 -12.33 -0.08 9.03 16 9 O -0.53 -9.80 15.60 5.32 0.08 -9.72 16 10 N -0.60 -9.42 3.33 -171.79 -0.57 -10.00 16 11 C 0.10 1.31 5.27 -2.44 -0.01 1.30 16 12 C -0.14 -2.34 5.90 -24.87 -0.15 -2.49 16 13 C 0.08 1.56 0.83 -89.94 -0.07 1.48 16 14 C 0.13 2.20 6.25 -3.33 -0.02 2.18 16 15 C 0.16 3.68 3.88 -4.06 -0.02 3.66 16 16 N -0.59 -14.00 2.95 -172.43 -0.51 -14.51 16 17 C -0.25 -6.54 9.67 -15.06 -0.15 -6.68 16 18 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 19 C 0.00 0.12 5.08 -17.43 -0.09 0.04 16 20 N -0.91 -25.09 10.90 55.49 0.61 -24.48 16 21 Si 0.91 20.80 29.57 -169.99 -5.03 15.77 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.11 2.16 6.72 -3.54 -0.02 2.13 16 26 C 0.05 0.76 6.76 37.30 0.25 1.01 16 27 O -0.38 -6.90 10.23 -35.23 -0.36 -7.27 16 28 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 30 H 0.08 1.03 6.64 -51.92 -0.34 0.69 16 31 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.16 1.79 6.04 -52.49 -0.32 1.48 16 34 H 0.07 0.90 6.81 -51.93 -0.35 0.55 16 35 H 0.07 0.89 7.35 -51.93 -0.38 0.51 16 36 H 0.09 1.44 5.98 -51.93 -0.31 1.13 16 37 H 0.09 1.55 7.84 -51.93 -0.41 1.15 16 38 H 0.09 1.58 7.79 -51.93 -0.40 1.18 16 39 H 0.08 1.39 8.06 -51.93 -0.42 0.97 16 40 H 0.10 2.54 5.89 -51.93 -0.31 2.24 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.06 1.18 7.96 -51.93 -0.41 0.76 16 45 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.05 0.77 6.13 -51.93 -0.32 0.45 16 LS Contribution 361.40 15.07 5.45 5.45 Total: -1.00 -30.78 361.40 -8.90 -39.68 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.48 Total: 3.39 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -1.96 Total: 7.62 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -0.61 Total: -54.93 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.28 Total: -16.98 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.78 -8.90 -39.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972311956.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.376 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds