Wall clock time and date at job start Tue Mar 31 2020 17:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38399 * 120.85512 * 2 1 4 4 C 1.38298 * 119.30821 * 179.97438 * 3 2 1 5 5 N 1.31963 * 121.08032 * 0.02562 * 4 3 2 6 6 C 1.31668 * 121.87885 * 359.68107 * 5 4 3 7 7 C 1.39562 * 120.56149 * 0.58327 * 6 5 4 8 8 C 1.47838 * 120.55709 * 179.73312 * 7 6 5 9 9 O 1.21547 * 120.00601 * 138.00650 * 8 7 6 10 10 N 1.34776 * 119.99712 * 317.99977 * 8 7 6 11 11 C 1.47488 * 125.66793 * 4.81336 * 10 8 7 12 12 C 1.55017 * 104.90029 * 204.04910 * 11 10 8 13 13 C 1.54523 * 101.52663 * 323.62130 * 12 11 10 14 14 C 1.47193 * 125.66386 * 184.85316 * 10 8 7 15 15 C 1.52110 * 109.89212 * 153.10392 * 13 12 11 16 16 N 1.47301 * 108.61136 * 72.25895 * 15 13 12 17 17 C 1.36940 * 121.07094 * 229.35259 * 16 15 13 18 18 H 1.07996 * 120.00222 * 152.41268 * 17 16 15 19 19 C 1.38809 * 119.99481 * 332.42091 * 17 16 15 20 20 N 1.31620 * 120.00395 * 348.98353 * 19 17 16 21 21 Si 1.86808 * 119.99716 * 168.98976 * 19 17 16 22 22 H 1.48502 * 109.46817 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46833 * 299.99402 * 21 19 17 24 24 H 1.48501 * 109.46835 * 59.99742 * 21 19 17 25 25 C 1.47165 * 117.86608 * 49.08446 * 16 15 13 26 26 C 1.53275 * 108.55495 * 309.12183 * 25 16 15 27 27 O 1.42067 * 110.33323 * 276.06671 * 13 12 11 28 28 H 1.08993 * 109.47402 * 270.31866 * 1 2 3 29 29 H 1.09001 * 109.47335 * 30.32528 * 1 2 3 30 30 H 1.09008 * 109.46581 * 150.32166 * 1 2 3 31 31 H 1.08000 * 120.34260 * 359.95023 * 3 2 1 32 32 H 1.08003 * 119.46701 * 179.97438 * 4 3 2 33 33 H 1.07999 * 119.71533 * 180.31368 * 6 5 4 34 34 H 1.08997 * 110.34918 * 322.90420 * 11 10 8 35 35 H 1.09003 * 110.35258 * 85.08294 * 11 10 8 36 36 H 1.09006 * 111.01337 * 205.56777 * 12 11 10 37 37 H 1.08999 * 111.01915 * 81.68628 * 12 11 10 38 38 H 1.09002 * 109.90960 * 59.09740 * 14 10 8 39 39 H 1.09006 * 109.90949 * 297.83482 * 14 10 8 40 40 H 1.08998 * 109.61941 * 312.43703 * 15 13 12 41 41 H 1.08996 * 109.51728 * 192.02520 * 15 13 12 42 42 H 0.96993 * 120.00085 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.62641 * 68.84581 * 25 16 15 44 44 H 1.08999 * 109.62759 * 189.40326 * 25 16 15 45 45 H 1.08998 * 109.51253 * 172.81420 * 26 25 16 46 46 H 1.08999 * 109.51317 * 292.96578 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5993 1.1508 0.0005 5 7 4.2498 0.0026 0.0005 6 6 3.6198 -1.1535 0.0063 7 6 2.2250 -1.2017 0.0004 8 6 1.5177 -2.4999 0.0009 9 8 0.5369 -2.6575 0.7013 10 7 1.9604 -3.5087 -0.7755 11 6 3.1877 -3.4897 -1.5933 12 6 2.9380 -4.5343 -2.7111 13 6 2.1423 -5.6178 -1.9490 14 6 1.2990 -4.8122 -0.9487 15 6 1.2468 -6.3780 -2.9154 16 7 2.0907 -7.2457 -3.7548 17 6 1.9575 -7.2566 -5.1177 18 1 2.8022 -7.5107 -5.7408 19 6 0.7369 -6.9408 -5.6982 20 7 -0.3420 -6.8437 -4.9506 21 14 0.6254 -6.6536 -7.5407 22 1 -0.7777 -6.3346 -7.9079 23 1 1.5066 -5.5199 -7.9191 24 1 1.0584 -7.8787 -8.2596 25 6 3.0857 -8.0963 -3.0822 26 6 3.9123 -7.2223 -2.1325 27 8 3.0293 -6.4966 -1.2713 28 1 -0.3634 0.0057 1.0276 29 1 -0.3634 0.8870 -0.5189 30 1 -0.3633 -0.8929 -0.5089 31 1 1.6965 2.1345 -0.0008 32 1 4.1558 2.0764 0.0001 33 1 4.1872 -2.0724 0.0112 34 1 3.3397 -2.5008 -2.0257 35 1 4.0495 -3.7757 -0.9904 36 1 3.8788 -4.9341 -3.0897 37 1 2.3431 -4.1080 -3.5188 38 1 0.2929 -4.6685 -1.3425 39 1 1.2552 -5.3360 0.0063 40 1 0.7055 -5.6720 -3.5452 41 1 0.5387 -6.9869 -2.3534 42 1 -1.1949 -6.6227 -5.3562 43 1 2.5772 -8.8751 -2.5138 44 1 3.7411 -8.5506 -3.8253 45 1 4.5672 -7.8546 -1.5330 46 1 4.5127 -6.5214 -2.7125 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972311956.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:24 Heat of formation + Delta-G solvation = -23.260065 kcal Electronic energy + Delta-G solvation = -29451.288401 eV Core-core repulsion = 25534.282086 eV Total energy + Delta-G solvation = -3917.006315 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.06699 -41.08540 -39.76731 -37.63155 -36.27716 -34.87951 -33.52434 -33.20619 -32.06098 -30.95164 -29.27967 -28.87515 -27.46791 -25.74972 -25.04238 -23.83048 -23.51420 -22.77773 -20.82951 -20.38919 -18.98845 -18.74206 -17.70993 -17.59617 -17.34548 -17.07388 -16.68305 -16.14275 -16.09672 -15.80545 -15.46555 -15.20941 -15.11648 -15.02654 -14.55047 -14.44665 -14.02046 -13.91205 -13.79932 -13.70930 -13.63322 -13.41005 -13.07501 -12.81622 -12.79119 -12.65957 -12.48426 -12.37062 -12.17528 -11.87609 -11.83649 -11.37661 -11.17707 -10.77180 -10.60368 -10.50597 -10.45584 -10.19978 -9.82950 -8.70420 -7.88563 -5.38571 -0.30494 0.14708 1.47581 1.48352 1.52083 1.55462 1.76708 2.47530 2.70938 2.74324 3.16940 3.26529 3.40741 3.46884 3.56342 3.63755 3.74693 3.87724 3.93015 4.04284 4.19775 4.27350 4.37365 4.37477 4.46313 4.49277 4.51679 4.57486 4.63402 4.67323 4.69997 4.76572 4.82034 4.89184 5.01583 5.02988 5.09395 5.11386 5.12941 5.25299 5.27194 5.53536 5.59665 5.61096 6.29405 6.30524 6.40245 6.82147 6.91193 7.07622 7.75598 8.30255 9.16892 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014667 B = 0.003482 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.572167 B = 8038.604552 C = 8640.766529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.003 4.003 3 C -0.170 4.170 4 C 0.120 3.880 5 N -0.507 5.507 6 C 0.133 3.867 7 C -0.200 4.200 8 C 0.576 3.424 9 O -0.568 6.568 10 N -0.606 5.606 11 C 0.107 3.893 12 C -0.137 4.137 13 C 0.096 3.904 14 C 0.132 3.868 15 C 0.175 3.825 16 N -0.609 5.609 17 C -0.258 4.258 18 H 0.076 0.924 19 C -0.048 4.048 20 N -0.939 5.939 21 Si 0.968 3.032 22 H -0.298 1.298 23 H -0.274 1.274 24 H -0.276 1.276 25 C 0.102 3.898 26 C 0.051 3.949 27 O -0.381 6.381 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.048 0.952 31 H 0.177 0.823 32 H 0.197 0.803 33 H 0.169 0.831 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.072 0.928 41 H -0.009 1.009 42 H 0.250 0.750 43 H 0.014 0.986 44 H 0.075 0.925 45 H 0.120 0.880 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.685 15.621 8.436 20.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.012 4.012 3 C -0.189 4.189 4 C -0.035 4.035 5 N -0.216 5.216 6 C -0.025 4.025 7 C -0.206 4.206 8 C 0.366 3.634 9 O -0.448 6.448 10 N -0.338 5.338 11 C -0.015 4.015 12 C -0.175 4.175 13 C 0.054 3.946 14 C 0.009 3.991 15 C 0.048 3.952 16 N -0.334 5.334 17 C -0.388 4.388 18 H 0.093 0.907 19 C -0.243 4.243 20 N -0.585 5.585 21 Si 0.796 3.204 22 H -0.224 1.224 23 H -0.200 1.200 24 H -0.202 1.202 25 C -0.023 4.023 26 C -0.026 4.026 27 O -0.301 6.301 28 H 0.103 0.897 29 H 0.118 0.882 30 H 0.067 0.933 31 H 0.195 0.805 32 H 0.214 0.786 33 H 0.186 0.814 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.009 0.991 42 H 0.059 0.941 43 H 0.032 0.968 44 H 0.094 0.906 45 H 0.138 0.862 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.907 15.588 8.967 20.532 hybrid contribution -1.742 -0.679 -1.240 2.243 sum 8.165 14.910 7.726 18.672 Atomic orbital electron populations 1.20884 0.89260 1.03400 1.03659 1.20662 0.97668 0.91848 0.91002 1.22375 0.95591 0.98857 1.02079 1.23623 0.92251 0.96976 0.90660 1.67807 1.41133 0.98737 1.13943 1.23211 0.89732 0.97496 0.92015 1.20727 0.96113 0.93088 1.10637 1.18110 0.83392 0.83212 0.78723 1.90756 1.28626 1.83004 1.42456 1.48516 1.26029 1.14033 1.45229 1.22662 0.86616 1.00422 0.91790 1.23091 1.02044 0.95321 0.97018 1.22221 0.91031 0.89855 0.91513 1.21571 0.95564 0.82734 0.99206 1.20853 0.90638 0.92900 0.90776 1.44278 1.41476 1.45022 1.02586 1.19502 0.94451 1.42389 0.82440 0.90657 1.25830 0.94812 1.01929 1.01761 1.70126 0.98806 1.53691 1.35907 0.85335 0.76188 0.78444 0.80443 1.22449 1.19957 1.20175 1.21811 0.92082 0.92904 0.95515 1.23214 0.91367 0.94682 0.93304 1.87682 1.50793 1.57453 1.34136 0.89739 0.88161 0.93265 0.80522 0.78627 0.81439 0.89059 0.88751 0.88218 0.91304 0.91293 0.90973 0.90969 0.99114 0.94122 0.96806 0.90637 0.86180 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 9.04 71.24 0.64 -1.76 16 2 C 0.00 -0.07 5.94 -19.40 -0.12 -0.19 16 3 C -0.17 -2.47 9.81 22.32 0.22 -2.25 16 4 C 0.12 1.79 11.17 84.69 0.95 2.73 16 5 N -0.51 -10.47 10.35 -194.76 -2.01 -12.49 16 6 C 0.13 2.99 9.17 85.04 0.78 3.77 16 7 C -0.20 -5.16 5.38 -19.99 -0.11 -5.26 16 8 C 0.58 18.53 6.82 86.78 0.59 19.12 16 9 O -0.57 -21.84 15.60 -3.86 -0.06 -21.90 16 10 N -0.61 -19.06 3.33 -815.71 -2.72 -21.78 16 11 C 0.11 2.76 5.27 86.88 0.46 3.22 16 12 C -0.14 -4.37 5.90 31.80 0.19 -4.19 16 13 C 0.10 3.57 0.83 -10.35 -0.01 3.56 16 14 C 0.13 4.82 6.25 86.47 0.54 5.36 16 15 C 0.17 8.32 3.88 85.93 0.33 8.66 16 16 N -0.61 -29.33 2.95 -699.44 -2.06 -31.39 16 17 C -0.26 -13.45 9.67 84.03 0.81 -12.64 16 18 H 0.08 3.74 7.85 -2.91 -0.02 3.72 16 19 C -0.05 -2.59 5.08 84.86 0.43 -2.16 16 20 N -0.94 -54.40 10.90 21.65 0.24 -54.17 16 21 Si 0.97 43.34 29.57 68.60 2.03 45.37 16 22 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 25 C 0.10 3.99 6.72 86.34 0.58 4.57 16 26 C 0.05 1.60 6.76 72.07 0.49 2.08 16 27 O -0.38 -13.61 10.23 -148.97 -1.52 -15.14 16 28 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.10 1.42 8.11 -2.39 -0.02 1.40 16 30 H 0.05 1.32 6.64 -2.38 -0.02 1.31 16 31 H 0.18 1.25 8.06 -2.91 -0.02 1.22 16 32 H 0.20 1.36 8.06 -2.91 -0.02 1.33 16 33 H 0.17 3.36 6.04 -2.91 -0.02 3.35 16 34 H 0.09 2.08 6.81 -2.39 -0.02 2.06 16 35 H 0.09 2.08 7.35 -2.39 -0.02 2.06 16 36 H 0.10 3.00 5.98 -2.38 -0.01 2.98 16 37 H 0.07 2.47 7.84 -2.39 -0.02 2.45 16 38 H 0.07 2.73 7.79 -2.39 -0.02 2.71 16 39 H 0.07 2.69 8.06 -2.38 -0.02 2.67 16 40 H 0.07 3.86 5.89 -2.39 -0.01 3.84 16 41 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 42 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 43 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.08 2.72 7.96 -2.39 -0.02 2.70 16 45 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 46 H 0.06 1.81 6.13 -2.39 -0.01 1.80 16 Total: -1.00 -70.09 361.40 1.66 -68.43 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 1.00 Total: 18.43 kcal Atomic # 6 Polarization: 17.85 SS G_CDS: 6.78 Total: 24.63 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -6.56 Total: -119.83 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -1.58 Total: -37.03 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -70.09 1.66 -68.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972311956.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.167 kcal (2) G-P(sol) polarization free energy of solvation -70.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds