Wall clock time and date at job start Tue Mar 31 2020 17:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38400 * 120.85619 * 2 1 4 4 C 1.38307 * 119.30684 * 180.29669 * 3 2 1 5 5 N 1.31965 * 121.07876 * 359.67923 * 4 3 2 6 6 C 1.31661 * 121.87927 * 0.02682 * 5 4 3 7 7 C 1.39560 * 120.56757 * 359.97438 * 6 5 4 8 8 C 1.47845 * 120.56249 * 180.02562 * 7 6 5 9 9 O 1.21552 * 119.99991 * 222.91760 * 8 7 6 10 10 N 1.34774 * 119.99744 * 42.91670 * 8 7 6 11 11 C 1.47480 * 125.66758 * 353.88506 * 10 8 7 12 12 C 1.55022 * 104.90180 * 156.00231 * 11 10 8 13 13 C 1.54520 * 101.52793 * 36.37510 * 12 11 10 14 14 C 1.47190 * 125.66291 * 173.91023 * 10 8 7 15 15 C 1.52108 * 110.11380 * 207.07428 * 13 12 11 16 16 N 1.47293 * 108.67980 * 187.41165 * 15 13 12 17 17 C 1.36944 * 121.05599 * 229.29661 * 16 15 13 18 18 H 1.08002 * 120.00013 * 35.03983 * 17 16 15 19 19 C 1.38807 * 119.99757 * 215.04953 * 17 16 15 20 20 N 1.31621 * 120.00506 * 22.11942 * 19 17 16 21 21 Si 1.86799 * 119.99556 * 202.12208 * 19 17 16 22 22 H 1.48504 * 109.47485 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47348 * 239.99523 * 21 19 17 24 24 H 1.48508 * 109.46983 * 119.99805 * 21 19 17 25 25 C 1.47161 * 117.88753 * 49.01861 * 16 15 13 26 26 C 1.53286 * 108.49536 * 309.05861 * 25 16 15 27 27 O 1.42058 * 110.33506 * 83.93829 * 13 12 11 28 28 H 1.09007 * 109.46761 * 263.75923 * 1 2 3 29 29 H 1.09002 * 109.47288 * 23.76021 * 1 2 3 30 30 H 1.08996 * 109.47221 * 143.76203 * 1 2 3 31 31 H 1.07997 * 120.34869 * 0.02562 * 3 2 1 32 32 H 1.07995 * 119.46269 * 179.70392 * 4 3 2 33 33 H 1.07999 * 119.71811 * 180.02562 * 6 5 4 34 34 H 1.09002 * 110.35285 * 37.15001 * 11 10 8 35 35 H 1.08998 * 110.36098 * 274.86328 * 11 10 8 36 36 H 1.08996 * 111.01432 * 278.31985 * 12 11 10 37 37 H 1.08999 * 111.01782 * 154.43525 * 12 11 10 38 38 H 1.09000 * 109.90347 * 62.11570 * 14 10 8 39 39 H 1.09000 * 109.90844 * 300.85886 * 14 10 8 40 40 H 1.08999 * 109.58110 * 67.61930 * 15 13 12 41 41 H 1.08997 * 109.47606 * 307.13701 * 15 13 12 42 42 H 0.97001 * 119.99486 * 6.38806 * 20 19 17 43 43 H 1.09000 * 109.63032 * 68.75841 * 25 16 15 44 44 H 1.08996 * 109.63191 * 189.15627 * 25 16 15 45 45 H 1.09010 * 109.51043 * 172.90457 * 26 25 16 46 46 H 1.08997 * 109.51707 * 293.05126 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5993 1.1507 -0.0062 5 7 4.2498 0.0025 -0.0059 6 6 3.6197 -1.1536 -0.0001 7 6 2.2250 -1.2017 0.0064 8 6 1.5176 -2.4999 0.0135 9 8 0.5466 -2.6668 -0.6984 10 7 1.9494 -3.4983 0.8092 11 6 3.1794 -3.4786 1.6228 12 6 2.9201 -4.4975 2.7620 13 6 2.1081 -5.5857 2.0242 14 6 1.2721 -4.7895 1.0103 15 6 1.2009 -6.3153 3.0032 16 7 0.5783 -7.4556 2.3093 17 6 -0.7726 -7.6704 2.3749 18 1 -1.4519 -6.8314 2.4069 19 6 -1.2687 -8.9666 2.4006 20 7 -0.4984 -9.9586 2.7942 21 14 -3.0298 -9.3030 1.8763 22 1 -3.6809 -8.0281 1.4813 23 1 -3.7760 -9.9094 3.0080 24 1 -3.0328 -10.2389 0.7233 25 6 1.4531 -8.3531 1.5380 26 6 2.3172 -7.5024 0.6004 27 8 2.9815 -6.4891 1.3617 28 1 -0.3633 -0.1117 1.0217 29 1 -0.3634 0.9406 -0.4141 30 1 -0.3633 -0.8288 -0.6075 31 1 1.6966 2.1345 0.0004 32 1 4.1557 2.0763 -0.0111 33 1 4.1871 -2.0725 0.0004 34 1 3.3454 -2.4833 2.0350 35 1 4.0353 -3.7894 1.0238 36 1 2.3332 -4.0476 3.5627 37 1 3.8568 -4.9017 3.1457 38 1 1.2187 -5.3315 0.0661 39 1 0.2690 -4.6251 1.4040 40 1 0.4265 -5.6360 3.3594 41 1 1.7910 -6.6768 3.8453 42 1 0.3835 -9.7744 3.1537 43 1 2.0939 -8.9137 2.2186 44 1 0.8453 -9.0444 0.9543 45 1 3.0582 -8.1362 0.1130 46 1 1.6844 -7.0349 -0.1540 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972311957.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:29 Heat of formation + Delta-G solvation = -8.980731 kcal Electronic energy + Delta-G solvation = -29370.386585 eV Core-core repulsion = 25453.999469 eV Total energy + Delta-G solvation = -3916.387116 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.08783 -40.01112 -38.57646 -36.44387 -34.72792 -34.08623 -32.54563 -31.45154 -30.99371 -29.31247 -28.42882 -27.60067 -25.83234 -24.51834 -23.43976 -23.07447 -22.53007 -21.19447 -19.93779 -18.85428 -17.79628 -17.42549 -16.81914 -16.69789 -16.54434 -15.70400 -15.15503 -14.95808 -14.51595 -14.48510 -14.39521 -14.23547 -13.93583 -13.62165 -13.49020 -13.13243 -13.00078 -12.98665 -12.80128 -12.76999 -12.13746 -12.11866 -12.05409 -11.59100 -11.46806 -11.20633 -10.80602 -10.69596 -10.61656 -10.30100 -10.16172 -9.97753 -9.77794 -9.61859 -9.47062 -9.43692 -9.18679 -8.64698 -8.44165 -6.93976 -6.11982 -3.43715 0.47880 0.88263 2.59651 2.86250 3.47048 3.47658 3.48942 3.63205 3.96594 4.04755 4.28945 4.38631 4.41744 4.47113 4.58517 4.71911 4.78000 4.99463 5.08513 5.14066 5.20648 5.28459 5.35030 5.36772 5.41504 5.43008 5.55235 5.62175 5.73351 5.81796 5.84206 5.89990 5.93829 6.04887 6.09379 6.14992 6.23831 6.24392 6.28989 6.35036 6.52878 6.71307 6.96054 7.42698 7.56557 7.67764 7.95017 8.04171 8.48454 8.96928 9.71124 10.17100 11.12042 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018961 B = 0.003241 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.361823 B = 8637.473329 C = 9579.704790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.012 3.988 3 C -0.182 4.182 4 C 0.117 3.883 5 N -0.491 5.491 6 C 0.134 3.866 7 C -0.180 4.180 8 C 0.577 3.423 9 O -0.529 6.529 10 N -0.607 5.607 11 C 0.098 3.902 12 C -0.118 4.118 13 C 0.096 3.904 14 C 0.097 3.903 15 C 0.132 3.868 16 N -0.598 5.598 17 C -0.354 4.354 18 H 0.054 0.946 19 C -0.017 4.017 20 N -0.911 5.911 21 Si 1.070 2.930 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.289 1.289 25 C 0.121 3.879 26 C 0.039 3.961 27 O -0.373 6.373 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.141 0.859 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.030 0.970 42 H 0.270 0.730 43 H 0.028 0.972 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.684 19.752 -2.985 21.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.004 3.996 3 C -0.202 4.202 4 C -0.039 4.039 5 N -0.200 5.200 6 C -0.024 4.024 7 C -0.185 4.185 8 C 0.364 3.636 9 O -0.406 6.406 10 N -0.340 5.340 11 C -0.025 4.025 12 C -0.157 4.157 13 C 0.054 3.946 14 C -0.024 4.024 15 C 0.005 3.995 16 N -0.323 5.323 17 C -0.483 4.483 18 H 0.072 0.928 19 C -0.220 4.220 20 N -0.550 5.550 21 Si 0.900 3.100 22 H -0.216 1.216 23 H -0.219 1.219 24 H -0.215 1.215 25 C -0.004 4.004 26 C -0.038 4.038 27 O -0.291 6.291 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.159 0.841 32 H 0.177 0.823 33 H 0.179 0.821 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.048 0.952 42 H 0.081 0.919 43 H 0.046 0.954 44 H 0.098 0.902 45 H 0.104 0.896 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.082 18.518 -3.677 20.537 hybrid contribution 0.046 1.152 0.290 1.189 sum 8.128 19.670 -3.387 21.551 Atomic orbital electron populations 1.21153 0.89448 1.04906 1.03921 1.20405 0.97344 0.91294 0.90581 1.22044 0.95588 0.98545 1.03976 1.22953 0.91748 0.96454 0.92774 1.67734 1.40720 0.98234 1.13270 1.23136 0.90313 0.96753 0.92233 1.20828 0.95485 0.94156 1.08017 1.17673 0.83746 0.82521 0.79632 1.90757 1.27641 1.81718 1.40527 1.48519 1.24974 1.16127 1.44387 1.22555 0.87410 0.99969 0.92575 1.22745 1.01852 0.94328 0.96748 1.22234 0.90724 0.89259 0.92394 1.22538 0.96830 0.82318 1.00759 1.21331 0.94572 0.91166 0.92424 1.44109 1.04251 1.29203 1.54759 1.19927 0.81095 0.94108 1.53134 0.92794 1.26015 1.05538 0.92716 0.97744 1.70722 1.12043 1.33850 1.38360 0.83460 0.74772 0.75225 0.76581 1.21641 1.21941 1.21517 1.21564 0.92734 0.92768 0.93382 1.23261 0.96559 0.89899 0.94092 1.87678 1.32863 1.42288 1.66317 0.90339 0.90891 0.87948 0.84122 0.82286 0.82078 0.90594 0.90518 0.89177 0.88606 0.90457 0.90027 0.91569 0.95183 0.91907 0.95400 0.90173 0.89558 0.93291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.56 36.00 0.34 -1.08 16 2 C 0.01 0.13 5.94 -103.91 -0.62 -0.48 16 3 C -0.18 -1.53 9.78 -39.50 -0.39 -1.92 16 4 C 0.12 1.01 11.17 -17.47 -0.20 0.81 16 5 N -0.49 -5.37 10.35 -12.91 -0.13 -5.51 16 6 C 0.13 1.51 9.15 -17.13 -0.16 1.35 16 7 C -0.18 -2.26 5.38 -104.82 -0.56 -2.82 16 8 C 0.58 8.87 7.13 -12.33 -0.09 8.78 16 9 O -0.53 -9.83 14.95 5.32 0.08 -9.75 16 10 N -0.61 -8.95 3.33 -171.80 -0.57 -9.53 16 11 C 0.10 1.13 5.28 -2.44 -0.01 1.12 16 12 C -0.12 -1.49 6.21 -24.87 -0.15 -1.64 16 13 C 0.10 1.61 0.80 -89.94 -0.07 1.54 16 14 C 0.10 1.69 5.97 -3.32 -0.02 1.67 16 15 C 0.13 2.64 5.27 -4.06 -0.02 2.62 16 16 N -0.60 -14.40 2.72 -172.43 -0.47 -14.87 16 17 C -0.35 -9.56 9.48 -15.06 -0.14 -9.70 16 18 H 0.05 1.48 7.92 -52.49 -0.42 1.07 16 19 C -0.02 -0.46 4.75 -17.43 -0.08 -0.54 16 20 N -0.91 -26.67 12.73 55.49 0.71 -25.96 16 21 Si 1.07 24.95 29.97 -169.99 -5.09 19.85 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.12 2.73 4.97 -3.53 -0.02 2.71 16 26 C 0.04 0.73 6.76 37.31 0.25 0.99 16 27 O -0.37 -6.69 10.25 -35.23 -0.36 -7.05 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 30 H 0.10 1.34 5.71 -51.93 -0.30 1.05 16 31 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.16 1.63 6.11 -52.49 -0.32 1.31 16 34 H 0.08 0.75 6.77 -51.93 -0.35 0.40 16 35 H 0.08 0.83 7.41 -51.93 -0.38 0.45 16 36 H 0.09 1.03 8.01 -51.93 -0.42 0.62 16 37 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.08 1.50 6.03 -51.93 -0.31 1.19 16 39 H 0.08 1.56 7.59 -51.93 -0.39 1.17 16 40 H 0.07 1.31 7.66 -51.93 -0.40 0.91 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.27 7.98 6.81 -40.82 -0.28 7.70 16 43 H 0.03 0.65 7.76 -51.93 -0.40 0.25 16 44 H 0.08 1.99 6.95 -51.93 -0.36 1.63 16 45 H 0.09 1.39 8.14 -51.92 -0.42 0.97 16 46 H 0.05 0.93 6.24 -51.93 -0.32 0.61 16 LS Contribution 360.97 15.07 5.44 5.44 Total: -1.00 -32.52 360.97 -8.75 -41.26 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.41 Total: 2.70 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -1.94 Total: 3.40 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.47 Total: -55.86 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.28 Total: -16.81 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.09 Total: 19.85 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.52 -8.75 -41.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972311957.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.284 kcal (2) G-P(sol) polarization free energy of solvation -32.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds