Wall clock time and date at job start Tue Mar 31 2020 17:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38400 * 120.85619 * 2 1 4 4 C 1.38307 * 119.30684 * 180.29669 * 3 2 1 5 5 N 1.31965 * 121.07876 * 359.67923 * 4 3 2 6 6 C 1.31661 * 121.87927 * 0.02682 * 5 4 3 7 7 C 1.39560 * 120.56757 * 359.97438 * 6 5 4 8 8 C 1.47845 * 120.56249 * 180.02562 * 7 6 5 9 9 O 1.21552 * 119.99991 * 222.91760 * 8 7 6 10 10 N 1.34774 * 119.99744 * 42.91670 * 8 7 6 11 11 C 1.47480 * 125.66758 * 353.88506 * 10 8 7 12 12 C 1.55022 * 104.90180 * 156.00231 * 11 10 8 13 13 C 1.54520 * 101.52793 * 36.37510 * 12 11 10 14 14 C 1.47190 * 125.66291 * 173.91023 * 10 8 7 15 15 C 1.52108 * 110.11380 * 207.07428 * 13 12 11 16 16 N 1.47293 * 108.67980 * 187.41165 * 15 13 12 17 17 C 1.36944 * 121.05599 * 229.29661 * 16 15 13 18 18 H 1.08002 * 120.00013 * 35.03983 * 17 16 15 19 19 C 1.38807 * 119.99757 * 215.04953 * 17 16 15 20 20 N 1.31621 * 120.00506 * 22.11942 * 19 17 16 21 21 Si 1.86799 * 119.99556 * 202.12208 * 19 17 16 22 22 H 1.48504 * 109.47485 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47348 * 239.99523 * 21 19 17 24 24 H 1.48508 * 109.46983 * 119.99805 * 21 19 17 25 25 C 1.47161 * 117.88753 * 49.01861 * 16 15 13 26 26 C 1.53286 * 108.49536 * 309.05861 * 25 16 15 27 27 O 1.42058 * 110.33506 * 83.93829 * 13 12 11 28 28 H 1.09007 * 109.46761 * 263.75923 * 1 2 3 29 29 H 1.09002 * 109.47288 * 23.76021 * 1 2 3 30 30 H 1.08996 * 109.47221 * 143.76203 * 1 2 3 31 31 H 1.07997 * 120.34869 * 0.02562 * 3 2 1 32 32 H 1.07995 * 119.46269 * 179.70392 * 4 3 2 33 33 H 1.07999 * 119.71811 * 180.02562 * 6 5 4 34 34 H 1.09002 * 110.35285 * 37.15001 * 11 10 8 35 35 H 1.08998 * 110.36098 * 274.86328 * 11 10 8 36 36 H 1.08996 * 111.01432 * 278.31985 * 12 11 10 37 37 H 1.08999 * 111.01782 * 154.43525 * 12 11 10 38 38 H 1.09000 * 109.90347 * 62.11570 * 14 10 8 39 39 H 1.09000 * 109.90844 * 300.85886 * 14 10 8 40 40 H 1.08999 * 109.58110 * 67.61930 * 15 13 12 41 41 H 1.08997 * 109.47606 * 307.13701 * 15 13 12 42 42 H 0.97001 * 119.99486 * 6.38806 * 20 19 17 43 43 H 1.09000 * 109.63032 * 68.75841 * 25 16 15 44 44 H 1.08996 * 109.63191 * 189.15627 * 25 16 15 45 45 H 1.09010 * 109.51043 * 172.90457 * 26 25 16 46 46 H 1.08997 * 109.51707 * 293.05126 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5993 1.1507 -0.0062 5 7 4.2498 0.0025 -0.0059 6 6 3.6197 -1.1536 -0.0001 7 6 2.2250 -1.2017 0.0064 8 6 1.5176 -2.4999 0.0135 9 8 0.5466 -2.6668 -0.6984 10 7 1.9494 -3.4983 0.8092 11 6 3.1794 -3.4786 1.6228 12 6 2.9201 -4.4975 2.7620 13 6 2.1081 -5.5857 2.0242 14 6 1.2721 -4.7895 1.0103 15 6 1.2009 -6.3153 3.0032 16 7 0.5783 -7.4556 2.3093 17 6 -0.7726 -7.6704 2.3749 18 1 -1.4519 -6.8314 2.4069 19 6 -1.2687 -8.9666 2.4006 20 7 -0.4984 -9.9586 2.7942 21 14 -3.0298 -9.3030 1.8763 22 1 -3.6809 -8.0281 1.4813 23 1 -3.7760 -9.9094 3.0080 24 1 -3.0328 -10.2389 0.7233 25 6 1.4531 -8.3531 1.5380 26 6 2.3172 -7.5024 0.6004 27 8 2.9815 -6.4891 1.3617 28 1 -0.3633 -0.1117 1.0217 29 1 -0.3634 0.9406 -0.4141 30 1 -0.3633 -0.8288 -0.6075 31 1 1.6966 2.1345 0.0004 32 1 4.1557 2.0763 -0.0111 33 1 4.1871 -2.0725 0.0004 34 1 3.3454 -2.4833 2.0350 35 1 4.0353 -3.7894 1.0238 36 1 2.3332 -4.0476 3.5627 37 1 3.8568 -4.9017 3.1457 38 1 1.2187 -5.3315 0.0661 39 1 0.2690 -4.6251 1.4040 40 1 0.4265 -5.6360 3.3594 41 1 1.7910 -6.6768 3.8453 42 1 0.3835 -9.7744 3.1537 43 1 2.0939 -8.9137 2.2186 44 1 0.8453 -9.0444 0.9543 45 1 3.0582 -8.1362 0.1130 46 1 1.6844 -7.0349 -0.1540 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972311957.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:28 Heat of formation + Delta-G solvation = -30.670205 kcal Electronic energy + Delta-G solvation = -29371.327111 eV Core-core repulsion = 25453.999469 eV Total energy + Delta-G solvation = -3917.327642 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.13627 -41.18242 -39.80452 -37.83472 -36.51393 -34.89074 -33.83813 -33.03258 -32.29058 -30.62093 -29.56913 -28.86808 -27.39109 -25.67129 -25.16354 -24.23812 -23.37855 -22.71483 -21.05556 -20.37434 -19.47932 -18.80463 -17.99283 -17.63364 -17.33907 -16.93824 -16.75111 -16.42704 -15.99425 -15.75731 -15.69710 -15.41082 -15.20992 -15.13886 -14.84554 -14.61512 -14.03191 -13.93072 -13.85887 -13.70863 -13.55343 -13.34410 -13.29658 -12.93453 -12.82853 -12.60343 -12.49653 -12.38535 -12.16607 -11.95268 -11.82618 -11.34585 -11.18137 -10.93634 -10.58585 -10.51879 -10.46233 -10.22662 -9.86738 -8.97270 -8.25710 -5.58785 -0.33062 0.12877 1.48142 1.54863 1.61497 1.72974 1.78534 2.52859 2.61979 2.69435 3.09375 3.17516 3.29869 3.45704 3.46438 3.59922 3.65407 3.75206 3.78420 4.00614 4.08771 4.13370 4.21406 4.34163 4.36908 4.43339 4.48024 4.52644 4.59852 4.60581 4.61354 4.67124 4.70540 4.76904 4.80505 4.85410 4.97231 4.99911 5.05468 5.14564 5.15528 5.26581 5.58110 5.79411 6.16492 6.28705 6.32907 6.80259 6.88974 6.94054 7.63497 8.11310 8.92198 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018961 B = 0.003241 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.361823 B = 8637.473329 C = 9579.704790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.002 4.002 3 C -0.169 4.169 4 C 0.122 3.878 5 N -0.506 5.506 6 C 0.134 3.866 7 C -0.200 4.200 8 C 0.574 3.426 9 O -0.573 6.573 10 N -0.607 5.607 11 C 0.100 3.900 12 C -0.109 4.109 13 C 0.099 3.901 14 C 0.107 3.893 15 C 0.130 3.870 16 N -0.617 5.617 17 C -0.357 4.357 18 H 0.043 0.957 19 C -0.064 4.064 20 N -0.936 5.936 21 Si 1.116 2.884 22 H -0.278 1.278 23 H -0.287 1.287 24 H -0.285 1.285 25 C 0.127 3.873 26 C 0.052 3.948 27 O -0.367 6.367 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.176 0.824 32 H 0.197 0.803 33 H 0.169 0.831 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.032 0.968 42 H 0.256 0.744 43 H 0.016 0.984 44 H 0.050 0.950 45 H 0.118 0.882 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.409 22.940 -2.919 25.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.010 4.010 3 C -0.189 4.189 4 C -0.034 4.034 5 N -0.215 5.215 6 C -0.023 4.023 7 C -0.205 4.205 8 C 0.364 3.636 9 O -0.453 6.453 10 N -0.339 5.339 11 C -0.021 4.021 12 C -0.147 4.147 13 C 0.057 3.943 14 C -0.016 4.016 15 C 0.005 3.995 16 N -0.343 5.343 17 C -0.486 4.486 18 H 0.061 0.939 19 C -0.262 4.262 20 N -0.576 5.576 21 Si 0.940 3.060 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.211 1.211 25 C 0.001 3.999 26 C -0.026 4.026 27 O -0.285 6.285 28 H 0.097 0.903 29 H 0.119 0.881 30 H 0.087 0.913 31 H 0.194 0.806 32 H 0.214 0.786 33 H 0.186 0.814 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.135 0.865 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.049 0.951 42 H 0.066 0.934 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.135 0.865 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.856 21.739 -3.593 24.138 hybrid contribution -0.470 0.292 0.281 0.621 sum 9.386 22.032 -3.313 24.176 Atomic orbital electron populations 1.21098 0.89573 1.04958 1.03499 1.20635 0.97580 0.91836 0.90957 1.22392 0.95619 0.98813 1.02047 1.23628 0.92197 0.97000 0.90535 1.67816 1.41064 0.98706 1.13914 1.23193 0.89578 0.97514 0.92048 1.20661 0.96093 0.92902 1.10831 1.18231 0.83243 0.83436 0.78708 1.90733 1.29717 1.82559 1.42339 1.48563 1.25706 1.14909 1.44697 1.22756 0.86239 1.01142 0.91940 1.22825 1.02203 0.92657 0.96996 1.22196 0.90875 0.89497 0.91731 1.22184 0.96180 0.83820 0.99431 1.21452 0.94908 0.89993 0.93172 1.44315 1.03830 1.30284 1.55865 1.20088 0.82684 0.93834 1.52017 0.93888 1.27257 1.08472 0.92791 0.97705 1.70839 1.11901 1.34322 1.40523 0.82843 0.71050 0.75649 0.76410 1.20316 1.21334 1.21107 1.21451 0.92336 0.92755 0.93318 1.23111 0.96714 0.89784 0.92946 1.87694 1.32681 1.42022 1.66119 0.90266 0.88105 0.91322 0.80616 0.78612 0.81384 0.88018 0.89081 0.87823 0.86490 0.93015 0.92675 0.91959 0.95058 0.93398 0.96575 0.93148 0.86461 0.94012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.56 71.23 0.68 -2.00 16 2 C 0.00 -0.03 5.94 -19.40 -0.12 -0.15 16 3 C -0.17 -2.20 9.78 22.32 0.22 -1.98 16 4 C 0.12 1.59 11.17 84.69 0.95 2.54 16 5 N -0.51 -9.43 10.35 -194.76 -2.01 -11.44 16 6 C 0.13 2.73 9.15 85.04 0.78 3.51 16 7 C -0.20 -4.78 5.38 -19.99 -0.11 -4.89 16 8 C 0.57 17.87 7.13 86.79 0.62 18.49 16 9 O -0.57 -22.39 14.95 -3.88 -0.06 -22.44 16 10 N -0.61 -17.74 3.33 -815.72 -2.72 -20.46 16 11 C 0.10 2.10 5.28 86.88 0.46 2.56 16 12 C -0.11 -2.48 6.21 31.80 0.20 -2.28 16 13 C 0.10 3.28 0.80 -10.35 -0.01 3.27 16 14 C 0.11 3.83 5.97 86.47 0.52 4.35 16 15 C 0.13 5.31 5.27 85.93 0.45 5.76 16 16 N -0.62 -30.75 2.72 -699.45 -1.90 -32.66 16 17 C -0.36 -19.96 9.48 84.03 0.80 -19.16 16 18 H 0.04 2.46 7.92 -2.91 -0.02 2.44 16 19 C -0.06 -3.64 4.75 84.86 0.40 -3.24 16 20 N -0.94 -56.48 12.73 21.65 0.28 -56.21 16 21 Si 1.12 51.42 29.97 68.60 2.06 53.48 16 22 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 25 C 0.13 5.92 4.97 86.35 0.43 6.35 16 26 C 0.05 1.94 6.76 72.08 0.49 2.43 16 27 O -0.37 -12.79 10.25 -148.97 -1.53 -14.32 16 28 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.10 1.35 8.07 -2.39 -0.02 1.33 16 30 H 0.07 1.87 5.71 -2.39 -0.01 1.86 16 31 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 32 H 0.20 1.03 8.06 -2.91 -0.02 1.00 16 33 H 0.17 3.00 6.11 -2.91 -0.02 2.99 16 34 H 0.10 1.67 6.77 -2.39 -0.02 1.66 16 35 H 0.09 1.70 7.41 -2.39 -0.02 1.68 16 36 H 0.10 2.11 8.01 -2.39 -0.02 2.09 16 37 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.05 2.10 6.03 -2.39 -0.01 2.09 16 39 H 0.05 2.24 7.59 -2.39 -0.02 2.22 16 40 H 0.06 2.54 7.66 -2.39 -0.02 2.52 16 41 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.26 15.75 6.81 -92.71 -0.63 15.12 16 43 H 0.02 0.79 7.76 -2.39 -0.02 0.77 16 44 H 0.05 2.62 6.95 -2.39 -0.02 2.60 16 45 H 0.12 3.64 8.14 -2.38 -0.02 3.62 16 46 H 0.04 1.63 6.24 -2.39 -0.01 1.62 16 Total: -1.00 -74.67 360.97 2.00 -72.67 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 1.14 Total: 15.83 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 6.75 Total: 15.55 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -6.36 Total: -120.77 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -1.59 Total: -36.76 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 2.06 Total: 53.48 kcal Total: -74.67 2.00 -72.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972311957.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.003 kcal (2) G-P(sol) polarization free energy of solvation -74.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds