Wall clock time and date at job start Tue Mar 31 2020 16:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38347 * 120.34857 * 2 1 4 4 N 1.31927 * 121.07958 * 179.72243 * 3 2 1 5 5 C 1.31695 * 121.88022 * 0.53973 * 4 3 2 6 6 C 1.39522 * 120.56702 * 359.75126 * 5 4 3 7 7 C 1.47837 * 120.56138 * 180.02562 * 6 5 4 8 8 O 1.21553 * 120.00192 * 199.18867 * 7 6 5 9 9 N 1.34779 * 119.99824 * 19.18903 * 7 6 5 10 10 C 1.47481 * 125.66361 * 5.34785 * 9 7 6 11 11 C 1.55247 * 104.79115 * 155.93960 * 10 9 7 12 12 C 1.54489 * 101.43934 * 36.65004 * 11 10 9 13 13 C 1.47174 * 125.66150 * 185.66168 * 9 7 6 14 14 C 1.52524 * 110.09754 * 206.81101 * 12 11 10 15 15 N 1.47311 * 108.39702 * 186.95757 * 14 12 11 16 16 C 1.36934 * 121.06421 * 229.37432 * 15 14 12 17 17 H 1.08000 * 120.00050 * 154.59397 * 16 15 14 18 18 C 1.38820 * 119.99738 * 334.58534 * 16 15 14 19 19 N 1.31619 * 119.99487 * 160.59606 * 18 16 15 20 20 Si 1.86795 * 120.00273 * 340.59636 * 18 16 15 21 21 H 1.48501 * 109.47088 * 95.14620 * 20 18 16 22 22 H 1.48494 * 109.47151 * 215.14598 * 20 18 16 23 23 H 1.48497 * 109.47223 * 335.14491 * 20 18 16 24 24 C 1.47166 * 117.86491 * 49.39160 * 15 14 12 25 25 C 1.53271 * 108.55498 * 308.87049 * 24 15 14 26 26 O 1.42059 * 110.38814 * 83.76964 * 12 11 10 27 27 C 1.38353 * 120.34839 * 180.27404 * 2 1 3 28 28 H 1.09002 * 109.47198 * 269.72180 * 1 2 3 29 29 H 1.08997 * 109.46818 * 29.72755 * 1 2 3 30 30 H 1.09002 * 109.46625 * 149.72597 * 1 2 3 31 31 H 1.08001 * 119.45860 * 359.96908 * 3 2 1 32 32 H 1.07994 * 119.71738 * 179.73028 * 5 4 3 33 33 H 1.09003 * 110.35244 * 274.88597 * 10 9 7 34 34 H 1.09001 * 110.35660 * 37.17298 * 10 9 7 35 35 H 1.08999 * 111.20030 * 278.55540 * 11 10 9 36 36 H 1.09003 * 110.94658 * 154.63181 * 11 10 9 37 37 H 1.09002 * 109.91028 * 300.84241 * 13 9 7 38 38 H 1.09005 * 109.90858 * 61.91500 * 13 9 7 39 39 H 1.09001 * 109.67549 * 306.67705 * 14 12 11 40 40 H 1.08993 * 109.68006 * 67.18890 * 14 12 11 41 41 H 0.96996 * 119.99625 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.62185 * 68.59273 * 24 15 14 43 43 H 1.09000 * 109.61781 * 188.96022 * 24 15 14 44 44 H 1.08993 * 109.51469 * 172.81963 * 25 24 15 45 45 H 1.09001 * 109.51090 * 292.97532 * 25 24 15 46 46 H 1.08007 * 120.85751 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1939 0.0000 4 7 3.5252 1.2107 0.0055 5 6 4.2350 0.1014 0.0006 6 6 3.6055 -1.1437 -0.0054 7 6 4.4024 -2.3889 -0.0103 8 8 3.8929 -3.4352 -0.3613 9 7 5.6938 -2.3639 0.3745 10 6 6.4041 -1.1953 0.9266 11 6 7.5726 -1.7959 1.7536 12 6 7.9695 -3.0107 0.8857 13 6 6.6311 -3.4966 0.3075 14 6 8.6000 -4.0931 1.7560 15 7 9.1147 -5.1562 0.8758 16 6 8.8213 -6.4728 1.1119 17 1 8.8319 -7.1827 0.2981 18 6 8.5105 -6.8949 2.3973 19 7 7.8698 -8.0299 2.5803 20 14 9.0016 -5.8520 3.8672 21 1 7.8625 -4.9846 4.2614 22 1 9.3658 -6.7371 5.0025 23 1 10.1668 -5.0052 3.5062 24 6 9.9546 -4.7580 -0.2652 25 6 9.2247 -3.6614 -1.0488 26 8 8.8526 -2.6099 -0.1524 27 6 2.2061 -1.1939 -0.0057 28 1 -0.3634 -0.0050 1.0277 29 1 -0.3633 0.8924 -0.5096 30 1 -0.3633 -0.8876 -0.5181 31 1 1.6629 2.1274 -0.0005 32 1 5.3135 0.1560 0.0010 33 1 6.7890 -0.5701 0.1208 34 1 5.7411 -0.6184 1.5714 35 1 7.2347 -2.1139 2.7399 36 1 8.3970 -1.0875 1.8348 37 1 6.2509 -4.3286 0.9003 38 1 6.7626 -3.8089 -0.7285 39 1 9.4194 -3.6673 2.3351 40 1 7.8494 -4.5053 2.4303 41 1 7.6524 -8.3247 3.4784 42 1 10.9083 -4.3752 0.0983 43 1 10.1278 -5.6193 -0.9103 44 1 9.8843 -3.2653 -1.8208 45 1 8.3305 -4.0786 -1.5118 46 1 1.6858 -2.1404 -0.0107 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972311991.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:59 Heat of formation + Delta-G solvation = -13.785021 kcal Electronic energy + Delta-G solvation = -29371.866290 eV Core-core repulsion = 25455.270844 eV Total energy + Delta-G solvation = -3916.595446 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.17149 -41.19223 -39.88011 -37.80624 -36.45894 -34.73615 -33.82600 -33.68239 -32.76692 -30.71816 -29.71262 -28.32257 -27.76609 -25.57925 -25.44530 -24.56089 -23.39629 -22.58486 -21.16224 -20.55214 -19.08278 -18.68374 -18.12688 -17.93976 -17.55338 -17.14711 -16.76308 -16.41802 -16.13774 -15.85597 -15.59233 -15.53037 -15.16731 -14.84857 -14.67103 -14.48081 -14.21741 -14.12312 -13.88863 -13.69928 -13.63705 -13.49584 -13.40064 -13.13526 -12.94346 -12.59648 -12.52583 -12.42226 -12.19384 -12.04113 -11.59462 -11.44874 -11.31379 -11.13135 -10.94245 -10.59335 -10.51286 -10.01782 -9.88417 -9.00315 -8.21233 -5.55274 -0.45037 0.09322 1.23230 1.36390 1.44845 1.59078 1.67830 2.35625 2.58934 2.69729 2.89906 3.11846 3.18719 3.37620 3.46404 3.59249 3.74783 3.75704 3.76698 3.86972 4.09281 4.11145 4.14259 4.23876 4.33717 4.36701 4.44044 4.50444 4.53638 4.63464 4.66031 4.71070 4.72584 4.81012 4.83300 4.87838 4.95924 5.01608 5.08518 5.13783 5.15048 5.21479 5.55604 5.74144 6.05338 6.17160 6.26246 6.75009 6.77947 6.86255 7.50786 7.90313 8.98288 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017240 B = 0.003450 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.763706 B = 8112.893133 C = 8656.012780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.138 4.138 3 C 0.122 3.878 4 N -0.494 5.494 5 C 0.114 3.886 6 C -0.191 4.191 7 C 0.568 3.432 8 O -0.584 6.584 9 N -0.608 5.608 10 C 0.093 3.907 11 C -0.117 4.117 12 C 0.102 3.898 13 C 0.104 3.896 14 C 0.107 3.893 15 N -0.624 5.624 16 C -0.248 4.248 17 H 0.053 0.947 18 C -0.039 4.039 19 N -0.958 5.958 20 Si 0.944 3.056 21 H -0.274 1.274 22 H -0.310 1.310 23 H -0.248 1.248 24 C 0.108 3.892 25 C 0.047 3.953 26 O -0.359 6.359 27 C -0.037 4.037 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.196 0.804 32 H 0.189 0.811 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.131 0.869 37 H 0.043 0.957 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.261 0.739 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.133 0.867 45 H 0.039 0.961 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.443 24.931 -4.142 26.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.140 4.140 3 C -0.035 4.035 4 N -0.202 5.202 5 C -0.043 4.043 6 C -0.196 4.196 7 C 0.358 3.642 8 O -0.465 6.465 9 N -0.341 5.341 10 C -0.028 4.028 11 C -0.154 4.154 12 C 0.059 3.941 13 C -0.019 4.019 14 C -0.019 4.019 15 N -0.349 5.349 16 C -0.377 4.377 17 H 0.071 0.929 18 C -0.234 4.234 19 N -0.604 5.604 20 Si 0.772 3.228 21 H -0.201 1.201 22 H -0.239 1.239 23 H -0.172 1.172 24 C -0.017 4.017 25 C -0.030 4.030 26 O -0.277 6.277 27 C -0.063 4.063 28 H 0.105 0.895 29 H 0.115 0.885 30 H 0.089 0.911 31 H 0.213 0.787 32 H 0.205 0.795 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.149 0.851 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.151 0.849 45 H 0.057 0.943 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.300 25.255 -4.282 26.926 hybrid contribution -0.319 -2.306 0.718 2.436 sum -8.619 22.949 -3.563 24.772 Atomic orbital electron populations 1.20831 0.87168 1.04603 1.03955 1.21240 0.99649 0.92589 1.00476 1.23569 0.89644 0.98967 0.91300 1.67873 1.09004 1.30346 1.12987 1.23948 1.02254 0.85931 0.92177 1.20763 0.95265 0.93850 1.09741 1.18316 0.80423 0.88579 0.76865 1.90780 1.71020 1.34067 1.50667 1.48508 1.09188 1.14059 1.62298 1.23101 0.93764 0.87708 0.98190 1.22959 0.99178 0.95809 0.97501 1.22187 0.87014 0.95778 0.89097 1.22221 0.89654 0.88945 1.01125 1.21926 0.97350 0.89224 0.93364 1.44526 1.57556 1.01669 1.31166 1.18819 1.40890 0.84841 0.93153 0.92889 1.25924 0.99615 0.97538 1.00296 1.69968 1.42650 1.25529 1.22254 0.85979 0.79650 0.78018 0.79176 1.20118 1.23923 1.17228 1.21835 0.93222 0.97413 0.89219 1.23195 0.98956 0.88852 0.92026 1.87718 1.64477 1.34787 1.40723 1.21771 0.92153 1.00015 0.92408 0.89474 0.88510 0.91148 0.78678 0.79478 0.87497 0.87495 0.88789 0.85107 0.93874 0.92134 0.92768 0.92511 0.92972 0.93372 0.91181 0.84927 0.94305 0.84641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.03 71.24 0.71 -0.25 16 2 C -0.14 -2.17 5.89 -19.81 -0.12 -2.29 16 3 C 0.12 1.79 10.85 84.70 0.92 2.71 16 4 N -0.49 -9.49 10.35 -194.76 -2.01 -11.51 16 5 C 0.11 2.36 9.30 85.02 0.79 3.15 16 6 C -0.19 -4.94 5.77 -19.99 -0.12 -5.06 16 7 C 0.57 19.33 7.71 86.78 0.67 20.00 16 8 O -0.58 -25.41 16.92 -3.88 -0.07 -25.48 16 9 N -0.61 -19.00 3.33 -815.25 -2.72 -21.72 16 10 C 0.09 1.94 4.95 86.96 0.43 2.37 16 11 C -0.12 -2.70 6.22 31.87 0.20 -2.50 16 12 C 0.10 3.34 0.81 -10.22 -0.01 3.34 16 13 C 0.10 3.93 5.95 86.48 0.51 4.44 16 14 C 0.11 4.38 2.93 86.07 0.25 4.63 16 15 N -0.62 -28.93 2.77 -698.62 -1.94 -30.87 16 16 C -0.25 -14.12 10.12 84.04 0.85 -13.27 16 17 H 0.05 3.32 8.05 -2.91 -0.02 3.30 16 18 C -0.04 -2.31 5.28 84.86 0.45 -1.86 16 19 N -0.96 -61.42 13.97 21.65 0.30 -61.12 16 20 Si 0.94 45.90 24.29 68.60 1.67 47.57 16 21 H -0.27 -12.57 6.72 99.48 0.67 -11.90 16 22 H -0.31 -15.46 7.11 99.48 0.71 -14.75 16 23 H -0.25 -11.19 6.19 99.48 0.62 -10.58 16 24 C 0.11 3.96 6.72 86.34 0.58 4.54 16 25 C 0.05 1.42 6.76 72.07 0.49 1.91 16 26 O -0.36 -10.94 10.26 -148.97 -1.53 -12.47 16 27 C -0.04 -0.85 9.39 22.73 0.21 -0.63 16 28 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.10 0.43 8.09 -2.39 -0.02 0.41 16 30 H 0.07 0.68 8.09 -2.39 -0.02 0.66 16 31 H 0.20 1.34 8.06 -2.91 -0.02 1.32 16 32 H 0.19 3.17 4.12 -2.91 -0.01 3.16 16 33 H 0.11 1.76 6.98 -2.39 -0.02 1.74 16 34 H 0.11 1.76 6.54 -2.39 -0.02 1.74 16 35 H 0.09 2.18 8.01 -2.39 -0.02 2.16 16 36 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.04 2.01 7.61 -2.39 -0.02 1.99 16 38 H 0.06 2.46 6.02 -2.38 -0.01 2.44 16 39 H 0.05 2.12 6.63 -2.39 -0.02 2.10 16 40 H 0.06 2.62 4.38 -2.39 -0.01 2.61 16 41 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 42 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.07 2.59 7.96 -2.39 -0.02 2.57 16 44 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 45 H 0.04 1.30 6.22 -2.39 -0.01 1.29 16 46 H 0.14 3.28 7.85 -2.91 -0.02 3.26 16 Total: -1.00 -79.67 356.08 1.41 -78.26 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.88 Total: 16.10 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: 6.83 Total: 21.23 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -6.36 Total: -125.21 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -1.59 Total: -37.94 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.67 Total: 47.57 kcal Total: -79.67 1.41 -78.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972311991.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.472 kcal (2) G-P(sol) polarization free energy of solvation -79.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds