Wall clock time and date at job start Tue Mar 31 2020 16:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38631 * 120.47189 * 2 1 4 4 C 1.38578 * 118.49453 * 180.02562 * 3 2 1 5 5 C 1.38608 * 119.34723 * 359.97438 * 4 3 2 6 6 N 1.31492 * 120.90103 * 359.74978 * 5 4 3 7 7 C 1.32746 * 121.64544 * 0.51834 * 6 5 4 8 8 C 1.48162 * 119.72546 * 179.75297 * 7 6 5 9 9 O 1.21515 * 119.99763 * 173.76020 * 8 7 6 10 10 N 1.34775 * 120.00221 * 353.76406 * 8 7 6 11 11 C 1.47490 * 125.65963 * 359.97438 * 10 8 7 12 12 C 1.55020 * 104.89688 * 204.01112 * 11 10 8 13 13 C 1.54818 * 101.62994 * 323.73002 * 12 11 10 14 14 C 1.47186 * 125.66524 * 179.97438 * 10 8 7 15 15 C 1.52513 * 110.21720 * 152.89960 * 13 12 11 16 16 N 1.47308 * 108.40318 * 72.18012 * 15 13 12 17 17 C 1.36931 * 121.06165 * 229.36277 * 16 15 13 18 18 H 1.08005 * 119.99986 * 152.37645 * 17 16 15 19 19 C 1.38808 * 120.00641 * 332.37134 * 17 16 15 20 20 N 1.31621 * 119.99847 * 348.23022 * 19 17 16 21 21 Si 1.86798 * 120.00505 * 168.22881 * 19 17 16 22 22 H 1.48505 * 109.46976 * 60.00238 * 21 19 17 23 23 H 1.48503 * 109.47358 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47035 * 300.00438 * 21 19 17 25 25 C 1.47166 * 117.87007 * 49.38653 * 16 15 13 26 26 C 1.53278 * 108.54700 * 308.86690 * 25 16 15 27 27 O 1.42062 * 110.30460 * 275.96997 * 13 12 11 28 28 H 1.08998 * 109.47189 * 262.57368 * 1 2 3 29 29 H 1.08997 * 109.47199 * 22.56838 * 1 2 3 30 30 H 1.08995 * 109.47667 * 142.57345 * 1 2 3 31 31 H 1.08006 * 120.75354 * 359.97438 * 3 2 1 32 32 H 1.08003 * 120.32999 * 180.02562 * 4 3 2 33 33 H 1.08000 * 119.54823 * 179.97438 * 5 4 3 34 34 H 1.08995 * 110.34928 * 322.86849 * 11 10 8 35 35 H 1.09000 * 110.35158 * 85.15468 * 11 10 8 36 36 H 1.09002 * 111.01235 * 81.68718 * 12 11 10 37 37 H 1.08994 * 111.01669 * 205.52628 * 12 11 10 38 38 H 1.08996 * 109.90722 * 297.87386 * 14 10 8 39 39 H 1.09004 * 109.90675 * 58.95115 * 14 10 8 40 40 H 1.08997 * 109.68011 * 191.91033 * 15 13 12 41 41 H 1.09004 * 109.67703 * 312.41738 * 15 13 12 42 42 H 0.97000 * 120.00134 * 179.97438 * 20 19 17 43 43 H 1.08996 * 109.62261 * 68.58060 * 25 16 15 44 44 H 1.08995 * 109.62124 * 188.95878 * 25 16 15 45 45 H 1.08998 * 109.51275 * 172.82724 * 26 25 16 46 46 H 1.08997 * 109.50999 * 292.98242 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2100 1.1948 0.0000 4 6 3.5949 1.1470 -0.0005 5 6 4.2321 -0.0839 -0.0005 6 7 3.5406 -1.2023 0.0049 7 6 2.2132 -1.2004 0.0004 8 6 1.4767 -2.4860 0.0013 9 8 0.2666 -2.4928 0.1116 10 7 2.1489 -3.6478 -0.1201 11 6 3.6106 -3.7848 -0.2612 12 6 3.8168 -5.1514 -0.9633 13 6 2.6871 -6.0006 -0.3314 14 6 1.5462 -4.9906 -0.1338 15 6 2.2620 -7.1088 -1.2892 16 7 3.3302 -8.1223 -1.3312 17 6 3.8197 -8.5838 -2.5238 18 1 4.8343 -8.9486 -2.5862 19 6 3.0119 -8.5830 -3.6527 20 7 1.7196 -8.3620 -3.5370 21 14 3.7589 -8.8954 -5.3361 22 1 4.3977 -10.2360 -5.3531 23 1 2.6929 -8.8414 -6.3685 24 1 4.7803 -7.8567 -5.6249 25 6 3.8540 -8.6232 -0.0504 26 6 4.2299 -7.4229 0.8256 27 8 3.1107 -6.5356 0.9146 28 1 -0.3633 -0.1328 1.0190 29 1 -0.3633 0.9489 -0.3944 30 1 -0.3634 -0.8160 -0.6245 31 1 1.6901 2.1415 -0.0004 32 1 4.1722 2.0599 -0.0001 33 1 5.3114 -0.1250 -0.0014 34 1 4.0092 -2.9784 -0.8766 35 1 4.0876 -3.7862 0.7189 36 1 3.6791 -5.0619 -2.0409 37 1 4.7971 -5.5668 -0.7299 38 1 1.0419 -5.1807 0.8136 39 1 0.8342 -5.0695 -0.9554 40 1 1.3372 -7.5646 -0.9358 41 1 2.1094 -6.6941 -2.2856 42 1 1.1551 -8.3610 -4.3258 43 1 3.0894 -9.2168 0.4507 44 1 4.7353 -9.2386 -0.2309 45 1 4.4995 -7.7703 1.8229 46 1 5.0757 -6.8985 0.3809 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972327772.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:04 Heat of formation + Delta-G solvation = 6.887858 kcal Electronic energy + Delta-G solvation = -29430.607243 eV Core-core repulsion = 25514.908241 eV Total energy + Delta-G solvation = -3915.699003 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.93313 -39.71754 -38.38233 -36.16820 -34.44301 -33.72064 -32.37478 -31.34679 -31.06686 -29.40164 -27.84059 -27.24601 -25.83854 -24.48447 -23.45852 -22.44489 -22.37203 -21.27964 -19.82468 -18.80297 -17.50354 -17.11503 -16.78834 -15.98709 -15.85236 -15.53395 -15.37908 -14.96035 -14.40006 -14.27688 -14.14132 -14.05180 -13.52600 -13.44399 -13.31777 -12.91216 -12.78383 -12.66403 -12.60176 -12.45463 -12.11226 -12.00806 -11.95062 -11.29039 -11.02545 -10.86877 -10.84748 -10.65904 -10.29390 -10.27540 -10.06788 -9.94992 -9.91317 -9.52112 -9.28595 -9.18953 -8.98992 -8.53672 -8.32554 -6.71558 -5.83342 -3.29762 0.51353 0.98821 2.77806 3.05549 3.34659 3.40580 3.41132 3.72054 4.02883 4.27058 4.42658 4.51915 4.53172 4.69985 4.72373 5.02539 5.09610 5.14166 5.33888 5.36775 5.46280 5.48634 5.58629 5.66657 5.74535 5.78528 5.84948 5.90241 5.93881 5.99377 6.05482 6.15121 6.18257 6.25884 6.37475 6.44993 6.45895 6.58667 6.61398 6.68440 6.81559 7.10527 7.49303 7.54859 7.70175 7.72023 7.96632 8.26564 8.34508 9.11774 9.73683 10.31856 11.24490 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015709 B = 0.003343 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.944403 B = 8372.618012 C = 8721.990879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.074 4.074 3 C -0.089 4.089 4 C -0.149 4.149 5 C 0.085 3.915 6 N -0.447 5.447 7 C 0.081 3.919 8 C 0.578 3.422 9 O -0.536 6.536 10 N -0.590 5.590 11 C 0.112 3.888 12 C -0.149 4.149 13 C 0.085 3.915 14 C 0.124 3.876 15 C 0.164 3.836 16 N -0.593 5.593 17 C -0.252 4.252 18 H 0.067 0.933 19 C 0.004 3.996 20 N -0.905 5.905 21 Si 0.906 3.094 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.109 3.891 26 C 0.047 3.953 27 O -0.377 6.377 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.162 0.838 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.029 0.971 41 H 0.100 0.900 42 H 0.256 0.744 43 H 0.026 0.974 44 H 0.062 0.938 45 H 0.082 0.918 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.178 17.986 7.774 20.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.077 4.077 3 C -0.114 4.114 4 C -0.169 4.169 5 C -0.074 4.074 6 N -0.158 5.158 7 C -0.056 4.056 8 C 0.365 3.635 9 O -0.414 6.414 10 N -0.321 5.321 11 C -0.010 4.010 12 C -0.187 4.187 13 C 0.043 3.957 14 C 0.002 3.998 15 C 0.038 3.962 16 N -0.316 5.316 17 C -0.382 4.382 18 H 0.085 0.915 19 C -0.195 4.195 20 N -0.550 5.550 21 Si 0.735 3.265 22 H -0.209 1.209 23 H -0.215 1.215 24 H -0.210 1.210 25 C -0.017 4.017 26 C -0.031 4.031 27 O -0.297 6.297 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.179 0.821 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.047 0.953 41 H 0.118 0.882 42 H 0.066 0.934 43 H 0.044 0.956 44 H 0.080 0.920 45 H 0.100 0.900 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.695 17.220 7.863 19.288 hybrid contribution 0.287 0.564 -1.067 1.240 sum 3.982 17.784 6.797 19.451 Atomic orbital electron populations 1.21043 0.88946 1.03209 1.04101 1.20945 0.98486 0.92289 0.95971 1.21537 0.94172 0.98003 0.97730 1.22351 0.95263 0.99810 0.99494 1.22860 1.00597 0.87444 0.96516 1.67880 1.07124 1.31091 1.09670 1.21005 0.89858 0.93505 1.01278 1.17464 0.86068 0.82036 0.77921 1.90731 1.12917 1.86250 1.51482 1.48406 1.09246 1.05296 1.69184 1.22607 0.79424 0.98131 1.00862 1.23314 1.00407 0.94049 1.00926 1.22727 0.92877 0.94055 0.86018 1.21842 0.95473 0.79454 1.03011 1.21226 0.90129 0.86994 0.97852 1.44032 1.43237 1.43886 1.00485 1.19122 0.95038 1.38157 0.85849 0.91486 1.25094 0.94937 1.00559 0.98871 1.69949 1.02935 1.53473 1.28624 0.86326 0.78069 0.78307 0.83774 1.20858 1.21544 1.20966 1.21594 0.97917 0.93979 0.88241 1.23091 0.88471 0.91769 0.99793 1.87663 1.49815 1.62940 1.29252 0.90340 0.92311 0.88172 0.84265 0.84404 0.82125 0.88927 0.91531 0.89831 0.89537 0.90556 0.89481 0.95341 0.88200 0.93376 0.95611 0.91951 0.90005 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 8.70 36.00 0.31 -0.99 16 2 C -0.07 -0.88 5.93 -104.09 -0.62 -1.50 16 3 C -0.09 -0.78 9.83 -39.31 -0.39 -1.17 16 4 C -0.15 -1.17 10.11 -39.32 -0.40 -1.56 16 5 C 0.09 0.81 11.18 -17.56 -0.20 0.62 16 6 N -0.45 -5.82 6.71 -9.80 -0.07 -5.89 16 7 C 0.08 1.17 6.70 -83.01 -0.56 0.61 16 8 C 0.58 9.86 7.78 -12.19 -0.09 9.76 16 9 O -0.54 -9.93 13.66 5.35 0.07 -9.86 16 10 N -0.59 -10.22 3.33 -171.67 -0.57 -10.79 16 11 C 0.11 1.78 5.83 -2.43 -0.01 1.76 16 12 C -0.15 -2.64 5.93 -24.71 -0.15 -2.79 16 13 C 0.08 1.66 0.84 -89.57 -0.08 1.59 16 14 C 0.12 2.32 6.23 -3.33 -0.02 2.30 16 15 C 0.16 3.87 3.92 -3.85 -0.02 3.85 16 16 N -0.59 -14.47 2.95 -172.18 -0.51 -14.98 16 17 C -0.25 -6.68 9.67 -15.06 -0.15 -6.83 16 18 H 0.07 1.73 7.86 -52.48 -0.41 1.32 16 19 C 0.00 0.11 5.07 -17.43 -0.09 0.02 16 20 N -0.91 -25.66 10.95 55.49 0.61 -25.05 16 21 Si 0.91 21.22 29.57 -169.99 -5.03 16.20 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.11 2.24 6.72 -3.53 -0.02 2.22 16 26 C 0.05 0.82 6.77 37.30 0.25 1.07 16 27 O -0.38 -7.36 10.22 -35.23 -0.36 -7.72 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.50 8.05 -51.93 -0.42 0.08 16 30 H 0.10 1.37 5.91 -51.93 -0.31 1.06 16 31 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 32 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 33 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.09 1.39 6.11 -51.93 -0.32 1.07 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.08 1.60 7.86 -51.93 -0.41 1.19 16 37 H 0.09 1.51 6.00 -51.93 -0.31 1.20 16 38 H 0.08 1.43 8.06 -51.93 -0.42 1.01 16 39 H 0.09 1.67 7.79 -51.93 -0.40 1.26 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 2.59 5.95 -51.93 -0.31 2.29 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 1.21 7.96 -51.93 -0.41 0.79 16 45 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.05 0.82 6.14 -51.93 -0.32 0.50 16 LS Contribution 360.82 15.07 5.44 5.44 Total: -1.00 -31.22 360.82 -9.18 -40.40 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -6.56 Total: 3.30 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: -2.21 Total: 8.96 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.54 Total: -56.71 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.29 Total: -17.58 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.22 -9.18 -40.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972327772.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.287 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds