Wall clock time and date at job start Tue Mar 31 2020 16:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38631 * 120.47189 * 2 1 4 4 C 1.38578 * 118.49453 * 180.02562 * 3 2 1 5 5 C 1.38608 * 119.34723 * 359.97438 * 4 3 2 6 6 N 1.31492 * 120.90103 * 359.74978 * 5 4 3 7 7 C 1.32746 * 121.64544 * 0.51834 * 6 5 4 8 8 C 1.48162 * 119.72546 * 179.75297 * 7 6 5 9 9 O 1.21515 * 119.99763 * 173.76020 * 8 7 6 10 10 N 1.34775 * 120.00221 * 353.76406 * 8 7 6 11 11 C 1.47490 * 125.65963 * 359.97438 * 10 8 7 12 12 C 1.55020 * 104.89688 * 204.01112 * 11 10 8 13 13 C 1.54818 * 101.62994 * 323.73002 * 12 11 10 14 14 C 1.47186 * 125.66524 * 179.97438 * 10 8 7 15 15 C 1.52513 * 110.21720 * 152.89960 * 13 12 11 16 16 N 1.47308 * 108.40318 * 72.18012 * 15 13 12 17 17 C 1.36931 * 121.06165 * 229.36277 * 16 15 13 18 18 H 1.08005 * 119.99986 * 152.37645 * 17 16 15 19 19 C 1.38808 * 120.00641 * 332.37134 * 17 16 15 20 20 N 1.31621 * 119.99847 * 348.23022 * 19 17 16 21 21 Si 1.86798 * 120.00505 * 168.22881 * 19 17 16 22 22 H 1.48505 * 109.46976 * 60.00238 * 21 19 17 23 23 H 1.48503 * 109.47358 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.47035 * 300.00438 * 21 19 17 25 25 C 1.47166 * 117.87007 * 49.38653 * 16 15 13 26 26 C 1.53278 * 108.54700 * 308.86690 * 25 16 15 27 27 O 1.42062 * 110.30460 * 275.96997 * 13 12 11 28 28 H 1.08998 * 109.47189 * 262.57368 * 1 2 3 29 29 H 1.08997 * 109.47199 * 22.56838 * 1 2 3 30 30 H 1.08995 * 109.47667 * 142.57345 * 1 2 3 31 31 H 1.08006 * 120.75354 * 359.97438 * 3 2 1 32 32 H 1.08003 * 120.32999 * 180.02562 * 4 3 2 33 33 H 1.08000 * 119.54823 * 179.97438 * 5 4 3 34 34 H 1.08995 * 110.34928 * 322.86849 * 11 10 8 35 35 H 1.09000 * 110.35158 * 85.15468 * 11 10 8 36 36 H 1.09002 * 111.01235 * 81.68718 * 12 11 10 37 37 H 1.08994 * 111.01669 * 205.52628 * 12 11 10 38 38 H 1.08996 * 109.90722 * 297.87386 * 14 10 8 39 39 H 1.09004 * 109.90675 * 58.95115 * 14 10 8 40 40 H 1.08997 * 109.68011 * 191.91033 * 15 13 12 41 41 H 1.09004 * 109.67703 * 312.41738 * 15 13 12 42 42 H 0.97000 * 120.00134 * 179.97438 * 20 19 17 43 43 H 1.08996 * 109.62261 * 68.58060 * 25 16 15 44 44 H 1.08995 * 109.62124 * 188.95878 * 25 16 15 45 45 H 1.08998 * 109.51275 * 172.82724 * 26 25 16 46 46 H 1.08997 * 109.50999 * 292.98242 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2100 1.1948 0.0000 4 6 3.5949 1.1470 -0.0005 5 6 4.2321 -0.0839 -0.0005 6 7 3.5406 -1.2023 0.0049 7 6 2.2132 -1.2004 0.0004 8 6 1.4767 -2.4860 0.0013 9 8 0.2666 -2.4928 0.1116 10 7 2.1489 -3.6478 -0.1201 11 6 3.6106 -3.7848 -0.2612 12 6 3.8168 -5.1514 -0.9633 13 6 2.6871 -6.0006 -0.3314 14 6 1.5462 -4.9906 -0.1338 15 6 2.2620 -7.1088 -1.2892 16 7 3.3302 -8.1223 -1.3312 17 6 3.8197 -8.5838 -2.5238 18 1 4.8343 -8.9486 -2.5862 19 6 3.0119 -8.5830 -3.6527 20 7 1.7196 -8.3620 -3.5370 21 14 3.7589 -8.8954 -5.3361 22 1 4.3977 -10.2360 -5.3531 23 1 2.6929 -8.8414 -6.3685 24 1 4.7803 -7.8567 -5.6249 25 6 3.8540 -8.6232 -0.0504 26 6 4.2299 -7.4229 0.8256 27 8 3.1107 -6.5356 0.9146 28 1 -0.3633 -0.1328 1.0190 29 1 -0.3633 0.9489 -0.3944 30 1 -0.3634 -0.8160 -0.6245 31 1 1.6901 2.1415 -0.0004 32 1 4.1722 2.0599 -0.0001 33 1 5.3114 -0.1250 -0.0014 34 1 4.0092 -2.9784 -0.8766 35 1 4.0876 -3.7862 0.7189 36 1 3.6791 -5.0619 -2.0409 37 1 4.7971 -5.5668 -0.7299 38 1 1.0419 -5.1807 0.8136 39 1 0.8342 -5.0695 -0.9554 40 1 1.3372 -7.5646 -0.9358 41 1 2.1094 -6.6941 -2.2856 42 1 1.1551 -8.3610 -4.3258 43 1 3.0894 -9.2168 0.4507 44 1 4.7353 -9.2386 -0.2309 45 1 4.4995 -7.7703 1.8229 46 1 5.0757 -6.8985 0.3809 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972327772.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:03 Heat of formation + Delta-G solvation = -12.756123 kcal Electronic energy + Delta-G solvation = -29431.459070 eV Core-core repulsion = 25514.908241 eV Total energy + Delta-G solvation = -3916.550830 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.00885 -41.05828 -39.67530 -37.63140 -36.27625 -34.59009 -33.39183 -33.20697 -32.44211 -30.88341 -29.20381 -28.56523 -27.37266 -25.67238 -25.07369 -23.78216 -23.37844 -22.78449 -21.03911 -20.41518 -18.96750 -18.71209 -17.81488 -17.43151 -16.95774 -16.91231 -16.53638 -16.30860 -16.11654 -15.79761 -15.42043 -15.22694 -15.06782 -14.87891 -14.54962 -14.29225 -14.08885 -13.94990 -13.68241 -13.61296 -13.58571 -13.18965 -13.04035 -12.87788 -12.76737 -12.64705 -12.48175 -12.32790 -12.17756 -11.86260 -11.81244 -11.17254 -11.12455 -10.76988 -10.72201 -10.48024 -10.26285 -10.10235 -9.64410 -8.70341 -7.88306 -5.38380 -0.34605 0.26412 1.47076 1.48823 1.55685 1.67158 1.78504 2.47916 2.74426 2.83686 3.05500 3.25519 3.40990 3.61113 3.67546 3.83963 3.90511 3.94764 4.01020 4.07237 4.25005 4.33257 4.37816 4.44742 4.52227 4.53933 4.56573 4.67114 4.76557 4.77352 4.79243 4.87890 4.94729 5.02394 5.06972 5.10206 5.15020 5.16965 5.26066 5.27974 5.36885 5.52330 5.60968 5.70815 6.30392 6.35227 6.42598 6.71523 7.03265 7.07330 7.75425 8.30861 9.17338 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015709 B = 0.003343 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.944403 B = 8372.618012 C = 8721.990879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C -0.084 4.084 4 C -0.127 4.127 5 C 0.079 3.921 6 N -0.471 5.471 7 C 0.046 3.954 8 C 0.569 3.431 9 O -0.563 6.563 10 N -0.597 5.597 11 C 0.129 3.871 12 C -0.140 4.140 13 C 0.096 3.904 14 C 0.130 3.870 15 C 0.177 3.823 16 N -0.609 5.609 17 C -0.259 4.259 18 H 0.076 0.924 19 C -0.050 4.050 20 N -0.939 5.939 21 Si 0.970 3.030 22 H -0.274 1.274 23 H -0.298 1.298 24 H -0.274 1.274 25 C 0.103 3.897 26 C 0.052 3.948 27 O -0.383 6.383 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.175 0.825 32 H 0.182 0.818 33 H 0.193 0.807 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.069 0.931 40 H -0.008 1.008 41 H 0.070 0.930 42 H 0.250 0.750 43 H 0.014 0.986 44 H 0.076 0.924 45 H 0.120 0.880 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.207 20.978 8.492 23.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 C -0.110 4.110 4 C -0.147 4.147 5 C -0.081 4.081 6 N -0.182 5.182 7 C -0.090 4.090 8 C 0.359 3.641 9 O -0.443 6.443 10 N -0.329 5.329 11 C 0.007 3.993 12 C -0.178 4.178 13 C 0.054 3.946 14 C 0.007 3.993 15 C 0.051 3.949 16 N -0.333 5.333 17 C -0.388 4.388 18 H 0.094 0.906 19 C -0.245 4.245 20 N -0.586 5.586 21 Si 0.797 3.203 22 H -0.200 1.200 23 H -0.224 1.224 24 H -0.200 1.200 25 C -0.022 4.022 26 C -0.025 4.025 27 O -0.303 6.303 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.192 0.808 32 H 0.200 0.800 33 H 0.210 0.790 34 H 0.124 0.876 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.010 0.990 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.032 0.968 44 H 0.095 0.905 45 H 0.138 0.862 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.751 20.208 8.610 22.980 hybrid contribution -0.616 -0.314 -1.235 1.415 sum 6.135 19.895 7.375 22.087 Atomic orbital electron populations 1.20947 0.89228 1.03525 1.03179 1.21112 0.98603 0.92824 0.96311 1.21960 0.94861 0.97927 0.96236 1.22852 0.95038 1.00778 0.96004 1.23513 1.01975 0.87245 0.95344 1.67723 1.06510 1.33256 1.10717 1.20626 0.90758 0.92419 1.05151 1.18142 0.86121 0.82952 0.76876 1.90708 1.14224 1.86861 1.52525 1.48479 1.09800 1.04741 1.69850 1.22537 0.78595 0.96996 1.01135 1.23204 0.99852 0.94947 0.99804 1.22362 0.93912 0.92871 0.85469 1.21591 0.95054 0.80767 1.01928 1.20899 0.89009 0.87898 0.97135 1.44289 1.43133 1.44407 1.01511 1.19501 0.95375 1.37185 0.86764 0.90642 1.25865 0.95230 1.01066 1.02337 1.70142 1.04280 1.55173 1.28965 0.85309 0.77087 0.78525 0.79335 1.20011 1.22418 1.19987 1.21803 0.97880 0.95555 0.86971 1.23204 0.87955 0.90089 1.01281 1.87668 1.50716 1.63230 1.28656 0.91019 0.89246 0.91392 0.80809 0.80025 0.79050 0.87640 0.90690 0.91691 0.88616 0.91163 0.91325 0.98977 0.91201 0.94128 0.96775 0.90532 0.86213 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.50 8.70 71.23 0.62 -1.88 16 2 C -0.09 -1.92 5.93 -19.52 -0.12 -2.04 16 3 C -0.08 -1.15 9.83 22.44 0.22 -0.93 16 4 C -0.13 -1.35 10.11 22.44 0.23 -1.12 16 5 C 0.08 1.21 11.18 84.83 0.95 2.16 16 6 N -0.47 -11.42 6.71 -184.91 -1.24 -12.66 16 7 C 0.05 1.31 6.70 41.89 0.28 1.59 16 8 C 0.57 20.25 7.78 86.88 0.68 20.93 16 9 O -0.56 -22.30 13.66 -3.76 -0.05 -22.36 16 10 N -0.60 -21.42 3.33 -815.35 -2.72 -24.14 16 11 C 0.13 4.03 5.83 86.88 0.51 4.54 16 12 C -0.14 -4.99 5.93 31.91 0.19 -4.81 16 13 C 0.10 3.86 0.84 -10.11 -0.01 3.85 16 14 C 0.13 5.15 6.23 86.47 0.54 5.69 16 15 C 0.18 8.83 3.92 86.06 0.34 9.17 16 16 N -0.61 -30.42 2.95 -698.65 -2.06 -32.48 16 17 C -0.26 -13.85 9.67 84.03 0.81 -13.04 16 18 H 0.08 3.85 7.86 -2.91 -0.02 3.82 16 19 C -0.05 -2.75 5.07 84.86 0.43 -2.32 16 20 N -0.94 -55.77 10.95 21.65 0.24 -55.54 16 21 Si 0.97 44.31 29.57 68.60 2.03 46.34 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 25 C 0.10 4.21 6.72 86.35 0.58 4.79 16 26 C 0.05 1.73 6.77 72.08 0.49 2.22 16 27 O -0.38 -14.82 10.22 -148.97 -1.52 -16.34 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.09 1.36 8.05 -2.39 -0.02 1.34 16 30 H 0.07 1.97 5.91 -2.39 -0.01 1.96 16 31 H 0.17 1.14 8.06 -2.91 -0.02 1.11 16 32 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 33 H 0.19 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.11 3.06 6.11 -2.39 -0.01 3.05 16 35 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.06 2.56 7.86 -2.39 -0.02 2.54 16 37 H 0.10 3.22 6.00 -2.39 -0.01 3.21 16 38 H 0.07 2.82 8.06 -2.39 -0.02 2.80 16 39 H 0.07 2.92 7.79 -2.39 -0.02 2.90 16 40 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H 0.07 3.89 5.95 -2.38 -0.01 3.88 16 42 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 43 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.08 2.87 7.96 -2.39 -0.02 2.85 16 45 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 46 H 0.06 1.91 6.14 -2.39 -0.01 1.90 16 Total: -1.00 -72.51 360.82 2.39 -70.12 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.99 Total: 18.25 kcal Atomic # 6 Polarization: 22.07 SS G_CDS: 6.73 Total: 28.80 kcal Atomic # 7 Polarization: -119.04 SS G_CDS: -5.78 Total: -124.82 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -1.57 Total: -38.70 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -72.51 2.39 -70.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972327772.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.361 kcal (2) G-P(sol) polarization free energy of solvation -72.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds