Wall clock time and date at job start Tue Mar 31 2020 17:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37997 * 120.81613 * 2 1 4 4 C 1.39133 * 119.26197 * 180.02562 * 3 2 1 5 5 O 1.35501 * 119.52347 * 179.97438 * 4 3 2 6 6 N 1.32433 * 120.95050 * 0.25626 * 4 3 2 7 7 C 1.31643 * 121.79642 * 359.47537 * 6 4 3 8 8 C 1.39556 * 120.62856 * 0.51772 * 7 6 4 9 9 C 1.47616 * 120.50146 * 179.76779 * 8 7 6 10 10 O 1.21581 * 120.00161 * 202.72322 * 9 8 7 11 11 N 1.34771 * 119.99706 * 22.72114 * 9 8 7 12 12 C 1.47204 * 136.00001 * 5.24268 * 11 9 8 13 13 C 1.53207 * 87.73309 * 153.42286 * 12 11 9 14 14 C 1.47159 * 135.99626 * 185.61034 * 11 9 8 15 15 C 1.52520 * 114.05317 * 139.66104 * 13 12 11 16 16 C 1.53188 * 109.36964 * 190.02361 * 15 13 12 17 17 C 1.53154 * 109.35941 * 301.11737 * 16 15 13 18 18 N 1.46907 * 109.07741 * 56.56668 * 17 16 15 19 19 C 1.36933 * 120.69587 * 124.52396 * 18 17 16 20 20 H 1.07991 * 120.00324 * 329.72764 * 19 18 17 21 21 C 1.38813 * 119.99791 * 149.73174 * 19 18 17 22 22 N 1.31621 * 120.00123 * 344.80697 * 21 19 18 23 23 Si 1.86799 * 119.99883 * 164.80854 * 21 19 18 24 24 H 1.48496 * 109.47221 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.46967 * 120.00139 * 23 21 19 26 26 H 1.48508 * 109.47029 * 239.99527 * 23 21 19 27 27 C 1.47138 * 118.60226 * 304.55014 * 18 17 16 28 28 H 1.08995 * 109.46667 * 95.56057 * 1 2 3 29 29 H 1.08998 * 109.46432 * 215.55835 * 1 2 3 30 30 H 1.08992 * 109.46989 * 335.55885 * 1 2 3 31 31 H 1.07999 * 120.36883 * 359.97438 * 3 2 1 32 32 H 0.96698 * 113.99898 * 90.00022 * 5 4 3 33 33 H 1.08004 * 119.68678 * 180.27055 * 7 6 4 34 34 H 1.08993 * 113.48992 * 268.11549 * 12 11 9 35 35 H 1.08997 * 113.48644 * 38.62876 * 12 11 9 36 36 H 1.09002 * 113.48864 * 321.37649 * 14 11 9 37 37 H 1.08997 * 113.48653 * 91.88068 * 14 11 9 38 38 H 1.08999 * 109.49125 * 309.99285 * 15 13 12 39 39 H 1.09005 * 109.48440 * 70.06010 * 15 13 12 40 40 H 1.08994 * 109.49449 * 181.14970 * 16 15 13 41 41 H 1.08999 * 109.48904 * 61.07950 * 16 15 13 42 42 H 1.08999 * 109.53112 * 296.69127 * 17 16 15 43 43 H 1.08994 * 109.53670 * 176.44907 * 17 16 15 44 44 H 0.96993 * 120.00171 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.63566 * 291.52098 * 27 18 17 46 46 H 1.08997 * 109.80340 * 171.01611 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1474 -0.0005 5 8 4.3043 2.3079 -0.0011 6 7 4.2548 -0.0064 -0.0061 7 6 3.6205 -1.1599 -0.0011 8 6 2.2257 -1.2043 -0.0005 9 6 1.5173 -2.4994 -0.0001 10 8 0.3733 -2.5667 -0.4063 11 7 2.1387 -3.6071 0.4506 12 6 3.4306 -3.9118 1.0871 13 6 2.7597 -5.1330 1.7240 14 6 1.8260 -5.0436 0.5163 15 6 3.6348 -6.3820 1.7464 16 6 2.7889 -7.5876 2.1677 17 6 2.1896 -7.3281 3.5530 18 7 1.4128 -6.0818 3.5143 19 6 0.0966 -6.0665 3.8919 20 1 -0.5150 -6.9457 3.7540 21 6 -0.4514 -4.9207 4.4520 22 7 0.3358 -3.9637 4.8956 23 14 -2.3062 -4.7370 4.5760 24 1 -2.9620 -5.9430 4.0098 25 1 -2.6943 -4.5850 6.0014 26 1 -2.7368 -3.5366 3.8151 27 6 2.0786 -4.8506 3.0608 28 1 -0.3632 -0.0996 -1.0228 29 1 -0.3632 -0.8361 0.5976 30 1 -0.3633 0.9355 0.4252 31 1 1.6934 2.1314 -0.0004 32 1 4.5076 2.6450 0.8822 33 1 4.1850 -2.0807 -0.0016 34 1 4.2154 -4.1689 0.3758 35 1 3.7461 -3.1605 1.8110 36 1 0.7832 -5.2507 0.7570 37 1 2.1793 -5.6051 -0.3485 38 1 4.0459 -6.5559 0.7520 39 1 4.4491 -6.2427 2.4576 40 1 3.4169 -8.4777 2.2041 41 1 1.9857 -7.7382 1.4464 42 1 2.9915 -7.2352 4.2854 43 1 1.5367 -8.1562 3.8287 44 1 -0.0471 -3.1629 5.2865 45 1 2.8246 -4.5459 3.7948 46 1 1.3420 -4.0569 2.9361 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982005380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:33 Heat of formation + Delta-G solvation = 24.363825 kcal Electronic energy + Delta-G solvation = -29461.653430 eV Core-core repulsion = 25546.712242 eV Total energy + Delta-G solvation = -3914.941188 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.08133 -40.20866 -38.31718 -37.03116 -35.88595 -33.88198 -32.98692 -31.31502 -30.21598 -29.56799 -28.03250 -26.09740 -25.84369 -25.36953 -24.02629 -22.35104 -22.23384 -20.87341 -19.56140 -18.57781 -18.01006 -17.49730 -16.90979 -16.64522 -16.08019 -15.62956 -15.31713 -14.90175 -14.64953 -14.19843 -14.01747 -13.72234 -13.62234 -13.35359 -13.10876 -13.02976 -12.71672 -12.65133 -12.59065 -12.27662 -12.17724 -12.04375 -11.82468 -11.61332 -11.28821 -10.95647 -10.77957 -10.48654 -10.27074 -10.14953 -10.01297 -9.94183 -9.69680 -9.61993 -9.48058 -9.30594 -9.11398 -8.51036 -8.36968 -6.68548 -5.83133 -3.27224 0.48804 1.01970 2.82653 2.99421 3.37062 3.37242 3.45821 3.46713 3.68784 4.34407 4.43962 4.47784 4.58093 4.67745 4.80915 5.06014 5.18259 5.30067 5.32132 5.40225 5.44542 5.51048 5.58373 5.62220 5.65342 5.70809 5.71950 5.77406 5.84793 5.91984 6.14234 6.18276 6.21823 6.24704 6.37982 6.38558 6.47573 6.54999 6.71541 6.80348 6.95205 7.21476 7.22763 7.55048 7.65050 7.78649 7.98021 8.33926 8.42101 9.17526 9.80519 10.37883 11.25971 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.004291 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.917544 B = 6524.415344 C = 7815.780234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.032 3.968 3 C -0.197 4.197 4 C 0.329 3.671 5 O -0.483 6.483 6 N -0.512 5.512 7 C 0.162 3.838 8 C -0.188 4.188 9 C 0.591 3.409 10 O -0.532 6.532 11 N -0.632 5.632 12 C 0.095 3.905 13 C -0.109 4.109 14 C 0.121 3.879 15 C -0.092 4.092 16 C -0.134 4.134 17 C 0.144 3.856 18 N -0.588 5.588 19 C -0.254 4.254 20 H 0.065 0.935 21 C 0.009 3.991 22 N -0.901 5.901 23 Si 0.898 3.102 24 H -0.276 1.276 25 H -0.290 1.290 26 H -0.288 1.288 27 C 0.202 3.798 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.146 0.854 32 H 0.403 0.597 33 H 0.167 0.833 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.018 0.982 43 H 0.053 0.947 44 H 0.253 0.747 45 H 0.025 0.975 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.525 5.672 -8.713 13.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.024 3.976 3 C -0.218 4.218 4 C 0.151 3.849 5 O -0.290 6.290 6 N -0.231 5.231 7 C 0.004 3.996 8 C -0.194 4.194 9 C 0.380 3.620 10 O -0.410 6.410 11 N -0.365 5.365 12 C -0.029 4.029 13 C -0.111 4.111 14 C -0.001 4.001 15 C -0.130 4.130 16 C -0.173 4.173 17 C 0.017 3.983 18 N -0.311 5.311 19 C -0.384 4.384 20 H 0.083 0.917 21 C -0.190 4.190 22 N -0.545 5.545 23 Si 0.728 3.272 24 H -0.201 1.201 25 H -0.217 1.217 26 H -0.215 1.215 27 C 0.076 3.924 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.164 0.836 32 H 0.262 0.738 33 H 0.184 0.816 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.036 0.964 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.043 0.957 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.586 6.016 -9.515 14.158 hybrid contribution -1.524 0.411 0.541 1.669 sum 7.062 6.427 -8.973 13.103 Atomic orbital electron populations 1.20990 0.88695 1.03617 1.04164 1.20358 0.97680 0.90625 0.88916 1.21950 0.93701 0.99446 1.06724 1.19335 0.87090 0.85214 0.93229 1.84699 1.75996 1.34169 1.34159 1.67175 1.41977 0.98199 1.15715 1.22918 0.90417 0.95243 0.91027 1.20902 0.95158 0.94418 1.08887 1.17275 0.85376 0.81941 0.77360 1.90776 1.16846 1.85313 1.48054 1.49373 1.20129 1.07282 1.59733 1.23347 0.86804 0.97549 0.95191 1.22762 0.95893 0.93728 0.98739 1.22984 1.02555 0.78132 0.96431 1.21221 0.97320 0.94220 1.00231 1.22022 0.98843 0.96159 1.00306 1.20908 0.94333 0.90199 0.92824 1.43975 1.08661 1.03378 1.75041 1.19159 0.85230 0.99595 1.34396 0.91710 1.25069 0.97801 0.98548 0.97581 1.70001 1.33309 1.08882 1.42318 0.86295 0.85767 0.77936 0.77251 1.20130 1.21674 1.21481 1.20386 0.95143 0.90313 0.86536 0.89527 0.88927 0.91458 0.83606 0.73819 0.81645 0.89915 0.90221 0.89397 0.90761 0.92978 0.91881 0.92941 0.92288 0.96389 0.92804 0.93734 0.95738 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 8.72 36.01 0.31 -1.30 16 2 C 0.03 0.46 5.94 -103.95 -0.62 -0.16 16 3 C -0.20 -2.35 9.70 -39.34 -0.38 -2.74 16 4 C 0.33 4.15 7.74 -16.96 -0.13 4.01 16 5 O -0.48 -4.95 13.55 -18.20 -0.25 -5.20 16 6 N -0.51 -7.16 10.37 -12.96 -0.13 -7.29 16 7 C 0.16 2.23 10.04 -17.14 -0.17 2.06 16 8 C -0.19 -2.90 5.86 -104.83 -0.61 -3.51 16 9 C 0.59 10.60 7.63 -12.44 -0.09 10.51 16 10 O -0.53 -11.04 14.94 5.29 0.08 -10.96 16 11 N -0.63 -10.54 3.44 -186.08 -0.64 -11.18 16 12 C 0.09 1.31 5.26 -8.01 -0.04 1.26 16 13 C -0.11 -1.79 0.96 -154.86 -0.15 -1.94 16 14 C 0.12 2.03 7.54 -8.18 -0.06 1.97 16 15 C -0.09 -1.29 5.11 -26.88 -0.14 -1.42 16 16 C -0.13 -2.06 6.03 -26.55 -0.16 -2.22 16 17 C 0.14 2.80 6.46 -3.74 -0.02 2.77 16 18 N -0.59 -13.89 2.99 -172.52 -0.52 -14.41 16 19 C -0.25 -6.78 9.57 -15.06 -0.14 -6.92 16 20 H 0.07 1.72 7.87 -52.49 -0.41 1.30 16 21 C 0.01 0.25 4.95 -17.43 -0.09 0.16 16 22 N -0.90 -25.70 11.31 55.49 0.63 -25.07 16 23 Si 0.90 21.88 29.58 -169.99 -5.03 16.85 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 C 0.20 4.46 4.39 -3.87 -0.02 4.45 16 28 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.09 1.55 6.44 -51.93 -0.33 1.22 16 30 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 31 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.40 2.09 9.06 45.56 0.41 2.50 16 33 H 0.17 1.96 5.53 -52.48 -0.29 1.67 16 34 H 0.08 0.87 7.87 -51.93 -0.41 0.47 16 35 H 0.08 1.10 7.69 -51.93 -0.40 0.70 16 36 H 0.09 1.79 8.11 -51.93 -0.42 1.37 16 37 H 0.07 1.06 8.06 -51.93 -0.42 0.64 16 38 H 0.05 0.61 8.09 -51.93 -0.42 0.19 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.94 8.03 -51.93 -0.42 0.53 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.05 1.05 7.93 -51.93 -0.41 0.63 16 44 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 2.26 6.14 -51.93 -0.32 1.94 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -33.01 369.35 -8.74 -41.75 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -5.93 Total: 2.95 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -2.52 Total: 6.99 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -0.66 Total: -57.95 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.17 Total: -16.16 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.01 -8.74 -41.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982005380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.115 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds