Wall clock time and date at job start Tue Mar 31 2020 17:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37997 * 120.81613 * 2 1 4 4 C 1.39133 * 119.26197 * 180.02562 * 3 2 1 5 5 O 1.35501 * 119.52347 * 179.97438 * 4 3 2 6 6 N 1.32433 * 120.95050 * 0.25626 * 4 3 2 7 7 C 1.31643 * 121.79642 * 359.47537 * 6 4 3 8 8 C 1.39556 * 120.62856 * 0.51772 * 7 6 4 9 9 C 1.47616 * 120.50146 * 179.76779 * 8 7 6 10 10 O 1.21581 * 120.00161 * 202.72322 * 9 8 7 11 11 N 1.34771 * 119.99706 * 22.72114 * 9 8 7 12 12 C 1.47204 * 136.00001 * 5.24268 * 11 9 8 13 13 C 1.53207 * 87.73309 * 153.42286 * 12 11 9 14 14 C 1.47159 * 135.99626 * 185.61034 * 11 9 8 15 15 C 1.52520 * 114.05317 * 139.66104 * 13 12 11 16 16 C 1.53188 * 109.36964 * 190.02361 * 15 13 12 17 17 C 1.53154 * 109.35941 * 301.11737 * 16 15 13 18 18 N 1.46907 * 109.07741 * 56.56668 * 17 16 15 19 19 C 1.36933 * 120.69587 * 124.52396 * 18 17 16 20 20 H 1.07991 * 120.00324 * 329.72764 * 19 18 17 21 21 C 1.38813 * 119.99791 * 149.73174 * 19 18 17 22 22 N 1.31621 * 120.00123 * 344.80697 * 21 19 18 23 23 Si 1.86799 * 119.99883 * 164.80854 * 21 19 18 24 24 H 1.48496 * 109.47221 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.46967 * 120.00139 * 23 21 19 26 26 H 1.48508 * 109.47029 * 239.99527 * 23 21 19 27 27 C 1.47138 * 118.60226 * 304.55014 * 18 17 16 28 28 H 1.08995 * 109.46667 * 95.56057 * 1 2 3 29 29 H 1.08998 * 109.46432 * 215.55835 * 1 2 3 30 30 H 1.08992 * 109.46989 * 335.55885 * 1 2 3 31 31 H 1.07999 * 120.36883 * 359.97438 * 3 2 1 32 32 H 0.96698 * 113.99898 * 90.00022 * 5 4 3 33 33 H 1.08004 * 119.68678 * 180.27055 * 7 6 4 34 34 H 1.08993 * 113.48992 * 268.11549 * 12 11 9 35 35 H 1.08997 * 113.48644 * 38.62876 * 12 11 9 36 36 H 1.09002 * 113.48864 * 321.37649 * 14 11 9 37 37 H 1.08997 * 113.48653 * 91.88068 * 14 11 9 38 38 H 1.08999 * 109.49125 * 309.99285 * 15 13 12 39 39 H 1.09005 * 109.48440 * 70.06010 * 15 13 12 40 40 H 1.08994 * 109.49449 * 181.14970 * 16 15 13 41 41 H 1.08999 * 109.48904 * 61.07950 * 16 15 13 42 42 H 1.08999 * 109.53112 * 296.69127 * 17 16 15 43 43 H 1.08994 * 109.53670 * 176.44907 * 17 16 15 44 44 H 0.96993 * 120.00171 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.63566 * 291.52098 * 27 18 17 46 46 H 1.08997 * 109.80340 * 171.01611 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1474 -0.0005 5 8 4.3043 2.3079 -0.0011 6 7 4.2548 -0.0064 -0.0061 7 6 3.6205 -1.1599 -0.0011 8 6 2.2257 -1.2043 -0.0005 9 6 1.5173 -2.4994 -0.0001 10 8 0.3733 -2.5667 -0.4063 11 7 2.1387 -3.6071 0.4506 12 6 3.4306 -3.9118 1.0871 13 6 2.7597 -5.1330 1.7240 14 6 1.8260 -5.0436 0.5163 15 6 3.6348 -6.3820 1.7464 16 6 2.7889 -7.5876 2.1677 17 6 2.1896 -7.3281 3.5530 18 7 1.4128 -6.0818 3.5143 19 6 0.0966 -6.0665 3.8919 20 1 -0.5150 -6.9457 3.7540 21 6 -0.4514 -4.9207 4.4520 22 7 0.3358 -3.9637 4.8956 23 14 -2.3062 -4.7370 4.5760 24 1 -2.9620 -5.9430 4.0098 25 1 -2.6943 -4.5850 6.0014 26 1 -2.7368 -3.5366 3.8151 27 6 2.0786 -4.8506 3.0608 28 1 -0.3632 -0.0996 -1.0228 29 1 -0.3632 -0.8361 0.5976 30 1 -0.3633 0.9355 0.4252 31 1 1.6934 2.1314 -0.0004 32 1 4.5076 2.6450 0.8822 33 1 4.1850 -2.0807 -0.0016 34 1 4.2154 -4.1689 0.3758 35 1 3.7461 -3.1605 1.8110 36 1 0.7832 -5.2507 0.7570 37 1 2.1793 -5.6051 -0.3485 38 1 4.0459 -6.5559 0.7520 39 1 4.4491 -6.2427 2.4576 40 1 3.4169 -8.4777 2.2041 41 1 1.9857 -7.7382 1.4464 42 1 2.9915 -7.2352 4.2854 43 1 1.5367 -8.1562 3.8287 44 1 -0.0471 -3.1629 5.2865 45 1 2.8246 -4.5459 3.7948 46 1 1.3420 -4.0569 2.9361 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982005380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:32 Heat of formation + Delta-G solvation = -0.867440 kcal Electronic energy + Delta-G solvation = -29462.747540 eV Core-core repulsion = 25546.712242 eV Total energy + Delta-G solvation = -3916.035297 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.26121 -41.37012 -39.59406 -38.01636 -37.46306 -34.96915 -34.69407 -32.61862 -31.85769 -30.89761 -29.13826 -27.63111 -27.09267 -27.04557 -25.10746 -23.96478 -23.30343 -22.34791 -20.82059 -19.54464 -19.45446 -18.70767 -18.50811 -17.93030 -17.17201 -16.85361 -16.75556 -16.58274 -15.82720 -15.63309 -15.42328 -15.25178 -14.88189 -14.61141 -14.59549 -14.18978 -14.04463 -13.89227 -13.66620 -13.56567 -13.48112 -13.30907 -13.11682 -12.94218 -12.78026 -12.73248 -12.57090 -12.25985 -12.00950 -11.72347 -11.51422 -11.36393 -10.98895 -10.86474 -10.73932 -10.57693 -10.50576 -10.14631 -9.66268 -8.63797 -7.91187 -5.35966 -0.55500 0.00369 1.36719 1.41404 1.48605 1.63258 1.75968 2.40772 2.45583 2.63910 3.19993 3.25829 3.34301 3.49288 3.53442 3.76671 3.87182 4.01731 4.08830 4.14447 4.30215 4.33271 4.38471 4.43584 4.51101 4.53986 4.61139 4.62949 4.64476 4.76614 4.83938 4.92156 5.01441 5.05896 5.10270 5.20126 5.22252 5.31845 5.33395 5.38752 5.50589 5.58522 5.69444 5.75039 6.38273 6.47934 6.68515 6.72076 7.00929 7.14543 7.87332 8.37486 9.14421 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.004291 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.917544 B = 6524.415344 C = 7815.780234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.019 3.981 3 C -0.188 4.188 4 C 0.335 3.665 5 O -0.483 6.483 6 N -0.526 5.526 7 C 0.170 3.830 8 C -0.212 4.212 9 C 0.582 3.418 10 O -0.576 6.576 11 N -0.639 5.639 12 C 0.107 3.893 13 C -0.106 4.106 14 C 0.122 3.878 15 C -0.085 4.085 16 C -0.124 4.124 17 C 0.136 3.864 18 N -0.608 5.608 19 C -0.255 4.255 20 H 0.062 0.938 21 C -0.042 4.042 22 N -0.929 5.929 23 Si 0.949 3.051 24 H -0.266 1.266 25 H -0.287 1.287 26 H -0.301 1.301 27 C 0.213 3.787 28 H 0.087 0.913 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.177 0.823 32 H 0.426 0.574 33 H 0.185 0.815 34 H 0.136 0.864 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.051 0.949 42 H 0.017 0.983 43 H 0.046 0.954 44 H 0.246 0.754 45 H 0.000 1.000 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.164 5.687 -10.280 16.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.010 3.990 3 C -0.209 4.209 4 C 0.157 3.843 5 O -0.295 6.295 6 N -0.246 5.246 7 C 0.011 3.989 8 C -0.217 4.217 9 C 0.373 3.627 10 O -0.458 6.458 11 N -0.372 5.372 12 C -0.015 4.015 13 C -0.109 4.109 14 C 0.000 4.000 15 C -0.123 4.123 16 C -0.163 4.163 17 C 0.011 3.989 18 N -0.331 5.331 19 C -0.386 4.386 20 H 0.079 0.921 21 C -0.238 4.238 22 N -0.576 5.576 23 Si 0.778 3.222 24 H -0.190 1.190 25 H -0.213 1.213 26 H -0.228 1.228 27 C 0.087 3.913 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.194 0.806 32 H 0.289 0.711 33 H 0.202 0.798 34 H 0.154 0.846 35 H 0.096 0.904 36 H 0.058 0.942 37 H 0.131 0.869 38 H 0.115 0.885 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.070 0.930 42 H 0.035 0.965 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.018 0.982 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 11.275 6.001 -11.060 16.895 hybrid contribution -2.312 0.415 1.086 2.588 sum 8.963 6.416 -9.974 14.865 Atomic orbital electron populations 1.20896 0.88972 1.03342 1.03653 1.20535 0.97806 0.91257 0.89357 1.22157 0.93583 0.99711 1.05438 1.19526 0.87480 0.85539 0.91757 1.84655 1.75577 1.33018 1.36203 1.67257 1.42198 0.98619 1.16480 1.23095 0.89613 0.96042 0.90100 1.20845 0.96052 0.93504 1.11333 1.17761 0.85085 0.83038 0.76815 1.90736 1.18733 1.86061 1.50264 1.49529 1.21351 1.06998 1.59297 1.23533 0.86509 0.95731 0.95736 1.22439 0.96473 0.96784 0.95166 1.23039 1.00000 0.78984 0.98003 1.21252 0.96492 0.91474 1.03043 1.21906 0.99241 0.98405 0.96774 1.21116 0.93829 0.88013 0.95900 1.44242 1.08254 1.05187 1.75388 1.19427 0.87054 0.99212 1.32864 0.92061 1.25665 1.00940 0.98784 0.98428 1.70132 1.34355 1.09139 1.43932 0.85475 0.82227 0.77493 0.77001 1.19029 1.21328 1.22812 1.20039 0.93387 0.88655 0.89174 0.89489 0.92902 0.88609 0.80611 0.71080 0.79824 0.84630 0.90361 0.94226 0.86858 0.88546 0.90826 0.89410 0.92973 0.96463 0.93539 0.94495 0.98196 0.94165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.15 8.72 71.24 0.62 -2.53 16 2 C 0.02 0.52 5.94 -19.43 -0.12 0.40 16 3 C -0.19 -4.12 9.70 22.43 0.22 -3.90 16 4 C 0.33 7.62 7.74 84.82 0.66 8.28 16 5 O -0.48 -8.42 13.55 -88.03 -1.19 -9.61 16 6 N -0.53 -13.57 10.37 -307.80 -3.19 -16.76 16 7 C 0.17 4.40 10.04 85.04 0.85 5.25 16 8 C -0.21 -6.53 5.86 -20.00 -0.12 -6.65 16 9 C 0.58 21.56 7.63 86.72 0.66 22.23 16 10 O -0.58 -25.46 14.94 -3.97 -0.06 -25.52 16 11 N -0.64 -21.22 3.44 -860.91 -2.96 -24.18 16 12 C 0.11 2.69 5.26 83.43 0.44 3.12 16 13 C -0.11 -3.35 0.96 -52.41 -0.05 -3.40 16 14 C 0.12 4.03 7.54 83.34 0.63 4.65 16 15 C -0.08 -2.03 5.11 30.50 0.16 -1.87 16 16 C -0.12 -3.45 6.03 30.71 0.19 -3.26 16 17 C 0.14 5.24 6.46 86.35 0.56 5.80 16 18 N -0.61 -29.47 2.99 -699.72 -2.09 -31.56 16 19 C -0.25 -14.11 9.57 84.03 0.80 -13.31 16 20 H 0.06 3.36 7.87 -2.92 -0.02 3.33 16 21 C -0.04 -2.42 4.95 84.86 0.42 -2.00 16 22 N -0.93 -55.80 11.31 21.65 0.24 -55.55 16 23 Si 0.95 46.93 29.58 68.60 2.03 48.96 16 24 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 25 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 26 H -0.30 -15.34 7.11 99.48 0.71 -14.64 16 27 C 0.21 9.72 4.39 86.14 0.38 10.10 16 28 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.05 1.92 6.44 -2.39 -0.02 1.90 16 30 H 0.10 2.03 8.07 -2.39 -0.02 2.01 16 31 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 32 H 0.43 3.03 9.06 -74.06 -0.67 2.36 16 33 H 0.19 3.83 5.53 -2.91 -0.02 3.82 16 34 H 0.14 2.09 7.87 -2.39 -0.02 2.07 16 35 H 0.08 2.03 7.69 -2.39 -0.02 2.01 16 36 H 0.04 1.68 8.11 -2.39 -0.02 1.67 16 37 H 0.11 2.87 8.06 -2.39 -0.02 2.85 16 38 H 0.10 1.59 8.09 -2.39 -0.02 1.57 16 39 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.05 1.54 8.03 -2.39 -0.02 1.52 16 42 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.05 1.80 7.93 -2.39 -0.02 1.78 16 44 H 0.25 14.48 8.31 -92.71 -0.77 13.70 16 45 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 46 H 0.04 2.20 6.14 -2.39 -0.01 2.19 16 Total: -1.00 -78.44 369.35 -0.59 -79.03 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.34 Total: 12.28 kcal Atomic # 6 Polarization: 16.62 SS G_CDS: 6.30 Total: 22.92 kcal Atomic # 7 Polarization: -120.06 SS G_CDS: -8.00 Total: -128.06 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -1.25 Total: -35.13 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -78.44 -0.59 -79.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982005380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.166 kcal (2) G-P(sol) polarization free energy of solvation -78.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds