Wall clock time and date at job start Tue Mar 31 2020 17:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38006 * 120.82226 * 2 1 4 4 C 1.39121 * 119.26423 * 180.27273 * 3 2 1 5 5 O 1.35502 * 119.52713 * 179.72256 * 4 3 2 6 6 N 1.32434 * 120.95185 * 359.69837 * 4 3 2 7 7 C 1.31641 * 121.79950 * 0.02562 * 6 4 3 8 8 C 1.39570 * 120.62575 * 0.02562 * 7 6 4 9 9 C 1.47612 * 120.49797 * 179.97438 * 8 7 6 10 10 O 1.21581 * 119.99614 * 174.35322 * 9 8 7 11 11 N 1.34775 * 119.99813 * 354.35976 * 9 8 7 12 12 C 1.46503 * 119.99767 * 179.97438 * 11 9 8 13 13 C 1.51366 * 111.67847 * 291.93990 * 12 11 9 14 14 C 1.55695 * 104.22872 * 276.82684 * 13 12 11 15 15 C 1.56284 * 105.93238 * 352.16996 * 14 13 12 16 16 C 1.50514 * 101.75834 * 335.74191 * 15 14 13 17 17 H 1.09002 * 108.13397 * 293.75438 * 16 15 14 18 18 N 1.42698 * 128.16433 * 161.32556 * 16 15 14 19 19 C 1.36939 * 127.09950 * 28.94902 * 18 16 15 20 20 H 1.08003 * 120.00281 * 2.37637 * 19 18 16 21 21 C 1.38809 * 119.99759 * 182.37823 * 19 18 16 22 22 N 1.31618 * 120.00320 * 323.56101 * 21 19 18 23 23 Si 1.86804 * 119.99919 * 143.83697 * 21 19 18 24 24 H 1.48502 * 109.47083 * 179.72064 * 23 21 19 25 25 H 1.48490 * 109.47492 * 299.72381 * 23 21 19 26 26 H 1.48500 * 109.46911 * 59.72772 * 23 21 19 27 27 C 1.49293 * 105.79804 * 209.20592 * 18 16 15 28 28 C 1.52138 * 111.49205 * 71.47096 * 12 11 9 29 29 H 1.08993 * 109.47341 * 263.68674 * 1 2 3 30 30 H 1.09004 * 109.47279 * 23.69058 * 1 2 3 31 31 H 1.09003 * 109.46799 * 143.68946 * 1 2 3 32 32 H 1.07996 * 120.36280 * 359.96992 * 3 2 1 33 33 H 0.96700 * 113.99473 * 269.98410 * 5 4 3 34 34 H 1.08005 * 119.68294 * 179.97438 * 7 6 4 35 35 H 0.96997 * 120.00817 * 0.02562 * 11 9 8 36 36 H 1.08999 * 111.09050 * 157.91802 * 13 12 11 37 37 H 1.09005 * 110.19712 * 35.28584 * 13 12 11 38 38 H 1.08994 * 110.15432 * 233.04964 * 14 13 12 39 39 H 1.09004 * 110.21716 * 111.31725 * 14 13 12 40 40 H 1.09006 * 110.96258 * 217.62597 * 15 14 13 41 41 H 1.08994 * 111.00499 * 93.87379 * 15 14 13 42 42 H 0.97003 * 119.99821 * 353.99746 * 22 21 19 43 43 H 1.09002 * 110.04867 * 127.65724 * 27 18 16 44 44 H 1.08996 * 110.04962 * 249.13527 * 27 18 16 45 45 H 1.09005 * 111.14745 * 192.00173 * 28 12 11 46 46 H 1.08998 * 111.15460 * 316.18373 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6047 1.1473 -0.0058 5 8 4.3043 2.3078 -0.0115 6 7 4.2548 -0.0065 -0.0053 7 6 3.6205 -1.1600 0.0002 8 6 2.2255 -1.2043 0.0051 9 6 1.5171 -2.4994 0.0106 10 8 0.3065 -2.5295 0.1185 11 7 2.2124 -3.6482 -0.1038 12 6 1.5094 -4.9336 -0.0977 13 6 0.8999 -5.2312 1.2555 14 6 2.0732 -5.8401 2.0781 15 6 3.2475 -6.0408 1.0665 16 6 2.5112 -6.1401 -0.2425 17 1 1.9157 -7.0529 -0.2284 18 7 3.0292 -5.9670 -1.5608 19 6 4.3081 -6.2119 -1.9845 20 1 5.0375 -6.6133 -1.2965 21 6 4.6672 -5.9440 -3.2984 22 7 3.8066 -6.1541 -4.2718 23 14 6.3746 -5.2927 -3.6857 24 1 6.5087 -5.0964 -5.1516 25 1 6.5790 -3.9959 -2.9919 26 1 7.3935 -6.2683 -3.2218 27 6 1.8905 -5.4580 -2.3813 28 6 0.7285 -5.1478 -1.3857 29 1 -0.3633 -0.1130 1.0214 30 1 -0.3634 0.9411 -0.4129 31 1 -0.3633 -0.8281 -0.6086 32 1 1.6935 2.1314 -0.0005 33 1 4.5038 2.6423 -0.8966 34 1 4.1850 -2.0808 0.0000 35 1 3.1783 -3.6242 -0.1894 36 1 0.0839 -5.9485 1.1689 37 1 0.5477 -4.3103 1.7203 38 1 1.7759 -6.7985 2.5035 39 1 2.3732 -5.1546 2.8707 40 1 3.7920 -6.9611 1.2786 41 1 3.9191 -5.1824 1.0722 42 1 2.9542 -6.5768 -4.0827 43 1 2.1858 -4.5504 -2.9079 44 1 1.5748 -6.2188 -3.0951 45 1 0.0459 -5.9929 -1.2957 46 1 0.1944 -4.2434 -1.6769 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992178483.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:13 Heat of formation + Delta-G solvation = 5.141646 kcal Electronic energy + Delta-G solvation = -29918.071332 eV Core-core repulsion = 26002.296608 eV Total energy + Delta-G solvation = -3915.774724 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.10969 -40.29786 -38.41436 -37.02010 -34.80103 -34.08544 -33.16517 -32.01873 -30.70364 -29.69214 -28.00818 -26.90107 -26.01059 -24.39563 -23.95825 -22.51057 -21.24526 -20.64623 -19.71245 -18.96950 -18.58354 -17.75399 -17.21640 -17.05818 -15.99409 -15.75420 -15.17293 -14.92719 -14.60065 -14.53484 -14.24532 -13.94357 -13.66520 -13.37625 -13.07288 -12.86198 -12.83694 -12.68226 -12.64813 -12.38400 -12.08705 -11.89476 -11.83520 -11.50616 -10.95232 -10.84974 -10.73941 -10.52949 -10.38039 -10.17753 -10.05669 -9.95807 -9.71285 -9.70034 -9.55724 -9.23324 -9.11323 -8.64345 -8.38607 -7.07328 -6.23741 -3.11338 0.46432 1.02215 2.84449 3.32241 3.42617 3.47092 3.52747 3.68982 3.74404 4.35105 4.41536 4.54818 4.58573 4.68335 4.89928 5.04708 5.06453 5.11402 5.26824 5.34461 5.45459 5.48309 5.59578 5.61686 5.63904 5.65631 5.73245 5.85196 5.89818 5.92363 6.07205 6.14299 6.20322 6.23484 6.28720 6.34628 6.37489 6.46281 6.57852 6.74123 6.90042 6.97886 7.06461 7.22438 7.68169 7.72362 7.83566 8.37901 8.45369 8.90926 9.74435 10.34720 11.10582 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.009944 B = 0.005090 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2814.963172 B = 5499.542428 C = 7086.349179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.032 3.968 3 C -0.201 4.201 4 C 0.331 3.669 5 O -0.483 6.483 6 N -0.509 5.509 7 C 0.169 3.831 8 C -0.199 4.199 9 C 0.564 3.436 10 O -0.538 6.538 11 N -0.684 5.684 12 C 0.132 3.868 13 C -0.111 4.111 14 C -0.118 4.118 15 C -0.113 4.113 16 C 0.164 3.836 17 H 0.021 0.979 18 N -0.585 5.585 19 C -0.355 4.355 20 H 0.075 0.925 21 C -0.011 4.011 22 N -0.901 5.901 23 Si 1.041 2.959 24 H -0.287 1.287 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.145 3.855 28 C -0.127 4.127 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.145 0.855 33 H 0.404 0.596 34 H 0.166 0.834 35 H 0.404 0.596 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.271 0.729 43 H 0.042 0.958 44 H 0.036 0.964 45 H 0.072 0.928 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.559 11.015 9.871 15.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.024 3.976 3 C -0.222 4.222 4 C 0.153 3.847 5 O -0.291 6.291 6 N -0.228 5.228 7 C 0.010 3.990 8 C -0.204 4.204 9 C 0.350 3.650 10 O -0.417 6.417 11 N -0.334 5.334 12 C 0.044 3.956 13 C -0.150 4.150 14 C -0.156 4.156 15 C -0.152 4.152 16 C 0.054 3.946 17 H 0.038 0.962 18 N -0.309 5.309 19 C -0.481 4.481 20 H 0.093 0.907 21 C -0.214 4.214 22 N -0.541 5.541 23 Si 0.871 3.129 24 H -0.212 1.212 25 H -0.220 1.220 26 H -0.220 1.220 27 C 0.021 3.979 28 C -0.166 4.166 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.163 0.837 33 H 0.262 0.738 34 H 0.183 0.817 35 H 0.241 0.759 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.090 0.910 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.418 11.502 9.238 15.400 hybrid contribution -1.026 -0.476 0.622 1.290 sum -5.444 11.026 9.859 15.761 Atomic orbital electron populations 1.21091 0.88720 1.03627 1.04213 1.20352 0.97639 0.90581 0.89042 1.21952 0.93682 0.99472 1.07116 1.19374 0.87087 0.85244 0.92970 1.84696 1.76066 1.34191 1.34103 1.67185 1.42035 0.98206 1.15375 1.22837 0.90508 0.95293 0.90315 1.21002 0.95052 0.94900 1.09441 1.17797 0.86981 0.83186 0.77016 1.90687 1.13240 1.87116 1.50671 1.45651 1.10964 1.04626 1.72167 1.21526 0.95699 0.84508 0.93847 1.21894 0.97368 1.01023 0.94690 1.22833 0.94893 1.00251 0.97620 1.21828 0.97108 1.01713 0.94557 1.20744 0.92847 0.93642 0.87407 0.96167 1.43704 1.07961 1.76584 1.02682 1.19616 0.84579 1.46015 0.97876 0.90740 1.25549 1.05077 0.99913 0.90842 1.70820 1.10522 1.39886 1.32857 0.83875 0.76015 0.77051 0.76000 1.21243 1.22014 1.21985 1.22125 0.85667 0.97557 0.92558 1.22570 0.97502 1.01392 0.95138 0.89924 0.91973 0.87866 0.83742 0.73791 0.81704 0.75931 0.90914 0.91067 0.91869 0.92122 0.91680 0.91571 0.91770 0.93959 0.94577 0.90964 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 8.83 36.00 0.32 -1.04 16 2 C 0.03 0.41 5.95 -103.96 -0.62 -0.21 16 3 C -0.20 -2.27 9.70 -39.34 -0.38 -2.65 16 4 C 0.33 4.20 7.74 -16.96 -0.13 4.07 16 5 O -0.48 -5.08 13.55 -18.20 -0.25 -5.33 16 6 N -0.51 -7.52 10.37 -12.96 -0.13 -7.66 16 7 C 0.17 2.44 10.70 -17.14 -0.18 2.25 16 8 C -0.20 -2.86 5.89 -104.82 -0.62 -3.48 16 9 C 0.56 8.98 7.07 -12.44 -0.09 8.89 16 10 O -0.54 -9.19 11.65 5.29 0.06 -9.12 16 11 N -0.68 -11.19 4.35 -47.51 -0.21 -11.40 16 12 C 0.13 2.23 0.38 -130.64 -0.05 2.18 16 13 C -0.11 -1.63 6.06 -26.12 -0.16 -1.79 16 14 C -0.12 -1.58 6.93 -23.53 -0.16 -1.74 16 15 C -0.11 -1.82 6.45 -26.21 -0.17 -1.99 16 16 C 0.16 3.12 2.65 -68.73 -0.18 2.94 16 17 H 0.02 0.42 7.96 -51.93 -0.41 0.01 16 18 N -0.58 -13.55 3.13 -162.75 -0.51 -14.06 16 19 C -0.35 -9.28 10.00 -15.06 -0.15 -9.43 16 20 H 0.07 1.95 8.03 -52.48 -0.42 1.53 16 21 C -0.01 -0.29 5.18 -17.43 -0.09 -0.38 16 22 N -0.90 -26.19 12.95 55.49 0.72 -25.47 16 23 Si 1.04 24.33 30.04 -169.99 -5.11 19.22 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 26 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 27 C 0.15 3.24 5.28 -0.81 0.00 3.24 16 28 C -0.13 -2.32 6.20 -25.49 -0.16 -2.48 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.55 8.06 -51.93 -0.42 0.13 16 31 H 0.10 1.39 5.96 -51.93 -0.31 1.08 16 32 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 33 H 0.40 2.22 9.06 45.56 0.41 2.63 16 34 H 0.17 2.23 6.45 -52.48 -0.34 1.89 16 35 H 0.40 6.70 5.82 -40.82 -0.24 6.46 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.08 6.85 -51.93 -0.36 0.73 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.07 1.06 7.28 -51.93 -0.38 0.68 16 42 H 0.27 7.86 5.93 -40.82 -0.24 7.62 16 43 H 0.04 1.04 8.09 -51.93 -0.42 0.62 16 44 H 0.04 0.87 6.53 -51.93 -0.34 0.53 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.07 1.32 7.19 -51.93 -0.37 0.95 16 LS Contribution 362.48 15.07 5.46 5.46 Total: -1.00 -31.68 362.48 -8.38 -40.06 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -5.59 Total: 9.90 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -2.83 Total: -1.61 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.13 Total: -58.58 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.18 Total: -14.45 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -5.11 Total: 19.22 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.68 -8.38 -40.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992178483.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.197 kcal (2) G-P(sol) polarization free energy of solvation -31.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds