Wall clock time and date at job start Tue Mar 31 2020 17:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38006 * 120.82226 * 2 1 4 4 C 1.39121 * 119.26423 * 180.27273 * 3 2 1 5 5 O 1.35502 * 119.52713 * 179.72256 * 4 3 2 6 6 N 1.32434 * 120.95185 * 359.69837 * 4 3 2 7 7 C 1.31641 * 121.79950 * 0.02562 * 6 4 3 8 8 C 1.39570 * 120.62575 * 0.02562 * 7 6 4 9 9 C 1.47612 * 120.49797 * 179.97438 * 8 7 6 10 10 O 1.21581 * 119.99614 * 174.35322 * 9 8 7 11 11 N 1.34775 * 119.99813 * 354.35976 * 9 8 7 12 12 C 1.46503 * 119.99767 * 179.97438 * 11 9 8 13 13 C 1.51366 * 111.67847 * 291.93990 * 12 11 9 14 14 C 1.55695 * 104.22872 * 276.82684 * 13 12 11 15 15 C 1.56284 * 105.93238 * 352.16996 * 14 13 12 16 16 C 1.50514 * 101.75834 * 335.74191 * 15 14 13 17 17 H 1.09002 * 108.13397 * 293.75438 * 16 15 14 18 18 N 1.42698 * 128.16433 * 161.32556 * 16 15 14 19 19 C 1.36939 * 127.09950 * 28.94902 * 18 16 15 20 20 H 1.08003 * 120.00281 * 2.37637 * 19 18 16 21 21 C 1.38809 * 119.99759 * 182.37823 * 19 18 16 22 22 N 1.31618 * 120.00320 * 323.56101 * 21 19 18 23 23 Si 1.86804 * 119.99919 * 143.83697 * 21 19 18 24 24 H 1.48502 * 109.47083 * 179.72064 * 23 21 19 25 25 H 1.48490 * 109.47492 * 299.72381 * 23 21 19 26 26 H 1.48500 * 109.46911 * 59.72772 * 23 21 19 27 27 C 1.49293 * 105.79804 * 209.20592 * 18 16 15 28 28 C 1.52138 * 111.49205 * 71.47096 * 12 11 9 29 29 H 1.08993 * 109.47341 * 263.68674 * 1 2 3 30 30 H 1.09004 * 109.47279 * 23.69058 * 1 2 3 31 31 H 1.09003 * 109.46799 * 143.68946 * 1 2 3 32 32 H 1.07996 * 120.36280 * 359.96992 * 3 2 1 33 33 H 0.96700 * 113.99473 * 269.98410 * 5 4 3 34 34 H 1.08005 * 119.68294 * 179.97438 * 7 6 4 35 35 H 0.96997 * 120.00817 * 0.02562 * 11 9 8 36 36 H 1.08999 * 111.09050 * 157.91802 * 13 12 11 37 37 H 1.09005 * 110.19712 * 35.28584 * 13 12 11 38 38 H 1.08994 * 110.15432 * 233.04964 * 14 13 12 39 39 H 1.09004 * 110.21716 * 111.31725 * 14 13 12 40 40 H 1.09006 * 110.96258 * 217.62597 * 15 14 13 41 41 H 1.08994 * 111.00499 * 93.87379 * 15 14 13 42 42 H 0.97003 * 119.99821 * 353.99746 * 22 21 19 43 43 H 1.09002 * 110.04867 * 127.65724 * 27 18 16 44 44 H 1.08996 * 110.04962 * 249.13527 * 27 18 16 45 45 H 1.09005 * 111.14745 * 192.00173 * 28 12 11 46 46 H 1.08998 * 111.15460 * 316.18373 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6047 1.1473 -0.0058 5 8 4.3043 2.3078 -0.0115 6 7 4.2548 -0.0065 -0.0053 7 6 3.6205 -1.1600 0.0002 8 6 2.2255 -1.2043 0.0051 9 6 1.5171 -2.4994 0.0106 10 8 0.3065 -2.5295 0.1185 11 7 2.2124 -3.6482 -0.1038 12 6 1.5094 -4.9336 -0.0977 13 6 0.8999 -5.2312 1.2555 14 6 2.0732 -5.8401 2.0781 15 6 3.2475 -6.0408 1.0665 16 6 2.5112 -6.1401 -0.2425 17 1 1.9157 -7.0529 -0.2284 18 7 3.0292 -5.9670 -1.5608 19 6 4.3081 -6.2119 -1.9845 20 1 5.0375 -6.6133 -1.2965 21 6 4.6672 -5.9440 -3.2984 22 7 3.8066 -6.1541 -4.2718 23 14 6.3746 -5.2927 -3.6857 24 1 6.5087 -5.0964 -5.1516 25 1 6.5790 -3.9959 -2.9919 26 1 7.3935 -6.2683 -3.2218 27 6 1.8905 -5.4580 -2.3813 28 6 0.7285 -5.1478 -1.3857 29 1 -0.3633 -0.1130 1.0214 30 1 -0.3634 0.9411 -0.4129 31 1 -0.3633 -0.8281 -0.6086 32 1 1.6935 2.1314 -0.0005 33 1 4.5038 2.6423 -0.8966 34 1 4.1850 -2.0808 0.0000 35 1 3.1783 -3.6242 -0.1894 36 1 0.0839 -5.9485 1.1689 37 1 0.5477 -4.3103 1.7203 38 1 1.7759 -6.7985 2.5035 39 1 2.3732 -5.1546 2.8707 40 1 3.7920 -6.9611 1.2786 41 1 3.9191 -5.1824 1.0722 42 1 2.9542 -6.5768 -4.0827 43 1 2.1858 -4.5504 -2.9079 44 1 1.5748 -6.2188 -3.0951 45 1 0.0459 -5.9929 -1.2957 46 1 0.1944 -4.2434 -1.6769 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992178483.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:12 Heat of formation + Delta-G solvation = -18.075302 kcal Electronic energy + Delta-G solvation = -29919.078095 eV Core-core repulsion = 26002.296608 eV Total energy + Delta-G solvation = -3916.781486 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.32685 -41.48928 -39.63917 -37.98272 -36.47756 -35.13964 -34.39854 -33.75465 -32.08860 -31.02615 -28.96425 -28.43283 -27.44205 -25.85261 -25.44549 -23.52732 -22.51753 -22.04295 -21.36538 -20.28460 -19.47801 -19.13013 -18.87830 -18.11530 -17.21303 -16.92763 -16.40084 -16.28394 -16.04362 -15.80488 -15.54178 -15.48994 -15.18479 -14.73399 -14.39615 -14.15953 -13.98184 -13.78963 -13.59092 -13.58553 -13.47310 -13.33170 -12.93924 -12.72933 -12.53582 -12.40611 -12.23840 -12.15508 -11.99006 -11.87685 -11.60218 -11.41760 -11.20261 -10.87711 -10.69553 -10.43978 -10.36155 -10.15736 -9.92029 -9.02462 -8.37568 -5.19022 -0.54982 0.04453 1.58017 1.64253 1.73111 1.82201 2.11361 2.45221 2.62847 2.69657 2.97111 3.11403 3.41862 3.56667 3.61495 3.67805 3.79490 3.90192 4.00489 4.13910 4.17904 4.27031 4.31896 4.40002 4.44569 4.54057 4.61160 4.65882 4.71202 4.78237 4.84614 4.89019 4.91659 5.02974 5.04022 5.06619 5.16480 5.18125 5.28598 5.34867 5.44583 5.46945 5.68614 5.77110 6.28549 6.48847 6.54517 6.73456 6.86203 7.18513 7.72479 8.39477 8.98396 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.009944 B = 0.005090 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2814.963172 B = 5499.542428 C = 7086.349179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.028 3.972 3 C -0.188 4.188 4 C 0.331 3.669 5 O -0.486 6.486 6 N -0.536 5.536 7 C 0.163 3.837 8 C -0.215 4.215 9 C 0.565 3.435 10 O -0.550 6.550 11 N -0.688 5.688 12 C 0.143 3.857 13 C -0.105 4.105 14 C -0.104 4.104 15 C -0.111 4.111 16 C 0.149 3.851 17 H 0.015 0.985 18 N -0.599 5.599 19 C -0.346 4.346 20 H 0.074 0.926 21 C -0.065 4.065 22 N -0.937 5.937 23 Si 1.092 2.908 24 H -0.300 1.300 25 H -0.280 1.280 26 H -0.275 1.275 27 C 0.155 3.845 28 C -0.116 4.116 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.179 0.821 33 H 0.425 0.575 34 H 0.164 0.836 35 H 0.401 0.599 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.257 0.743 43 H 0.009 0.991 44 H 0.010 0.990 45 H 0.088 0.912 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.737 12.738 12.010 18.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.020 3.980 3 C -0.209 4.209 4 C 0.153 3.847 5 O -0.297 6.297 6 N -0.256 5.256 7 C 0.004 3.996 8 C -0.220 4.220 9 C 0.353 3.647 10 O -0.431 6.431 11 N -0.338 5.338 12 C 0.056 3.944 13 C -0.144 4.144 14 C -0.142 4.142 15 C -0.149 4.149 16 C 0.040 3.960 17 H 0.032 0.968 18 N -0.323 5.323 19 C -0.474 4.474 20 H 0.091 0.909 21 C -0.263 4.263 22 N -0.580 5.580 23 Si 0.918 3.082 24 H -0.226 1.226 25 H -0.206 1.206 26 H -0.201 1.201 27 C 0.030 3.970 28 C -0.154 4.154 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.196 0.804 33 H 0.288 0.712 34 H 0.181 0.819 35 H 0.238 0.762 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.106 0.894 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.597 13.238 11.413 18.074 hybrid contribution -0.980 -0.964 -0.042 1.375 sum -5.577 12.274 11.371 17.637 Atomic orbital electron populations 1.21050 0.87666 1.04238 1.04132 1.20611 0.98436 0.90451 0.88497 1.22207 0.93063 1.00249 1.05356 1.19618 0.87863 0.85210 0.92027 1.84653 1.75854 1.33107 1.36091 1.67177 1.42910 0.98921 1.16577 1.22803 0.90598 0.95445 0.90705 1.20929 0.95128 0.94760 1.11230 1.18001 0.86849 0.83496 0.76359 1.90680 1.13716 1.87377 1.51313 1.45678 1.10834 1.04726 1.72566 1.21469 0.94525 0.83988 0.94450 1.21892 0.98156 1.01434 0.92922 1.22767 0.92883 1.01669 0.96887 1.21854 0.98018 1.01751 0.93324 1.20976 0.93932 0.94274 0.86830 0.96796 1.43821 1.07446 1.76377 1.04682 1.19837 0.85810 1.44293 0.97434 0.90857 1.26691 1.07716 1.00591 0.91261 1.70927 1.10783 1.42670 1.33576 0.83174 0.72727 0.77303 0.75025 1.22639 1.20641 1.20111 1.21927 0.86920 0.95148 0.93032 1.22474 0.96240 1.01833 0.94892 0.89546 0.89038 0.90213 0.80352 0.71231 0.81906 0.76212 0.89658 0.91146 0.89852 0.90425 0.91571 0.91729 0.93266 0.97228 0.97219 0.89373 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 8.83 71.23 0.63 -1.72 16 2 C 0.03 0.66 5.95 -19.43 -0.12 0.55 16 3 C -0.19 -3.70 9.70 22.43 0.22 -3.48 16 4 C 0.33 7.70 7.74 84.81 0.66 8.35 16 5 O -0.49 -8.96 13.55 -88.03 -1.19 -10.16 16 6 N -0.54 -15.33 10.37 -307.79 -3.19 -18.52 16 7 C 0.16 4.65 10.70 85.04 0.91 5.56 16 8 C -0.22 -6.06 5.89 -19.99 -0.12 -6.18 16 9 C 0.57 17.80 7.07 86.72 0.61 18.41 16 10 O -0.55 -18.43 11.65 -3.97 -0.05 -18.48 16 11 N -0.69 -22.42 4.35 -422.51 -1.84 -24.26 16 12 C 0.14 4.76 0.38 4.37 0.00 4.76 16 13 C -0.11 -2.85 6.06 30.99 0.19 -2.66 16 14 C -0.10 -2.49 6.93 32.67 0.23 -2.26 16 15 C -0.11 -3.40 6.45 30.93 0.20 -3.20 16 16 C 0.15 5.62 2.65 46.47 0.12 5.75 16 17 H 0.01 0.58 7.96 -2.39 -0.02 0.56 16 18 N -0.60 -28.42 3.13 -668.82 -2.10 -30.51 16 19 C -0.35 -18.46 10.00 84.03 0.84 -17.62 16 20 H 0.07 3.86 8.03 -2.91 -0.02 3.84 16 21 C -0.07 -3.63 5.18 84.86 0.44 -3.19 16 22 N -0.94 -56.71 12.95 21.65 0.28 -56.43 16 23 Si 1.09 50.05 30.04 68.60 2.06 52.11 16 24 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 25 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 26 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 27 C 0.15 7.22 5.28 86.93 0.46 7.67 16 28 C -0.12 -4.26 6.20 31.40 0.19 -4.06 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.70 16 30 H 0.09 1.31 8.06 -2.39 -0.02 1.29 16 31 H 0.08 2.06 5.96 -2.39 -0.01 2.05 16 32 H 0.18 2.24 8.06 -2.91 -0.02 2.21 16 33 H 0.43 3.51 9.06 -74.06 -0.67 2.84 16 34 H 0.16 4.49 6.45 -2.91 -0.02 4.47 16 35 H 0.40 13.46 5.82 -92.71 -0.54 12.92 16 36 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.07 1.97 6.85 -2.38 -0.02 1.95 16 38 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 40 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 41 H 0.06 1.99 7.28 -2.39 -0.02 1.97 16 42 H 0.26 15.77 5.93 -92.71 -0.55 15.22 16 43 H 0.01 0.50 8.09 -2.39 -0.02 0.48 16 44 H 0.01 0.51 6.53 -2.39 -0.02 0.49 16 45 H 0.09 2.94 8.14 -2.38 -0.02 2.93 16 46 H 0.07 2.60 7.19 -2.39 -0.02 2.58 16 Total: -1.00 -70.19 362.48 -0.52 -70.71 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 0.04 Total: 28.86 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 5.46 Total: 6.67 kcal Atomic # 7 Polarization: -122.88 SS G_CDS: -6.85 Total: -129.72 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -1.24 Total: -28.63 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 2.06 Total: 52.11 kcal Total: -70.19 -0.52 -70.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992178483.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.639 kcal (2) G-P(sol) polarization free energy of solvation -70.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds