Wall clock time and date at job start Tue Mar 31 2020 17:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37993 * 120.82437 * 2 1 4 4 C 1.39130 * 119.26681 * 179.97438 * 3 2 1 5 5 O 1.35497 * 119.52330 * 179.97438 * 4 3 2 6 6 N 1.32431 * 120.95081 * 0.02562 * 4 3 2 7 7 C 1.31641 * 121.79569 * 359.97438 * 6 4 3 8 8 C 1.39558 * 120.62887 * 359.73738 * 7 6 4 9 9 C 1.47624 * 120.50130 * 180.26552 * 8 7 6 10 10 O 1.21577 * 120.00053 * 186.12278 * 9 8 7 11 11 N 1.34770 * 119.99715 * 6.11758 * 9 8 7 12 12 C 1.46504 * 120.00107 * 179.97438 * 11 9 8 13 13 C 1.51231 * 111.07014 * 61.01521 * 12 11 9 14 14 C 1.55699 * 104.60591 * 83.89382 * 13 12 11 15 15 C 1.56282 * 105.93810 * 7.24796 * 14 13 12 16 16 C 1.50521 * 101.75485 * 24.25567 * 15 14 13 17 17 H 1.08994 * 108.54927 * 67.04619 * 16 15 14 18 18 N 1.42695 * 127.76754 * 198.90612 * 16 15 14 19 19 C 1.36940 * 127.10198 * 331.50611 * 18 16 15 20 20 H 1.07997 * 120.00098 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99754 * 179.97438 * 19 18 16 22 22 N 1.31615 * 120.00143 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99855 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47080 * 89.99995 * 23 21 19 25 25 H 1.48495 * 109.47315 * 210.00395 * 23 21 19 26 26 H 1.48505 * 109.47094 * 330.00440 * 23 21 19 27 27 C 1.49290 * 105.79738 * 151.48461 * 18 16 15 28 28 C 1.52132 * 111.09634 * 281.64510 * 12 11 9 29 29 H 1.08996 * 109.47495 * 96.36114 * 1 2 3 30 30 H 1.08999 * 109.47262 * 216.36281 * 1 2 3 31 31 H 1.09000 * 109.46752 * 336.35942 * 1 2 3 32 32 H 1.07996 * 120.36625 * 359.95564 * 3 2 1 33 33 H 0.96705 * 114.00101 * 90.00007 * 5 4 3 34 34 H 1.08004 * 119.68106 * 180.02562 * 7 6 4 35 35 H 0.97005 * 120.00432 * 0.02562 * 11 9 8 36 36 H 1.09001 * 110.41266 * 202.67347 * 13 12 11 37 37 H 1.08999 * 110.41204 * 324.99628 * 13 12 11 38 38 H 1.08999 * 110.15476 * 126.36406 * 14 13 12 39 39 H 1.08996 * 110.15638 * 248.12610 * 14 13 12 40 40 H 1.08997 * 110.97012 * 142.37354 * 15 14 13 41 41 H 1.09006 * 110.96877 * 266.10642 * 15 14 13 42 42 H 0.97004 * 119.99921 * 180.02562 * 22 21 19 43 43 H 1.09004 * 110.04921 * 110.59956 * 27 18 16 44 44 H 1.08998 * 110.05120 * 232.08034 * 27 18 16 45 45 H 1.09000 * 111.14715 * 43.90025 * 28 12 11 46 46 H 1.09001 * 111.15092 * 168.13142 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1472 0.0005 5 8 4.3043 2.3076 0.0000 6 7 4.2548 -0.0066 0.0005 7 6 3.6204 -1.1601 0.0005 8 6 2.2255 -1.2044 0.0060 9 6 1.5170 -2.4995 0.0119 10 8 0.3064 -2.5306 -0.0956 11 7 2.2122 -3.6473 0.1364 12 6 1.5091 -4.9326 0.1428 13 6 0.7616 -5.1498 -1.1537 14 6 1.8279 -5.7285 -2.1296 15 6 3.1046 -5.9868 -1.2660 16 6 2.5171 -6.1422 0.1111 17 1 1.9212 -7.0546 0.1329 18 7 3.1882 -6.0301 1.3653 19 6 4.5077 -6.2912 1.6224 20 1 5.1581 -6.6208 0.8258 21 6 5.0093 -6.1313 2.9068 22 7 4.2168 -5.7292 3.8776 23 14 6.8094 -6.4868 3.2574 24 1 7.6060 -5.2492 3.0597 25 1 6.9581 -6.9524 4.6596 26 1 7.2952 -7.5413 2.3315 27 6 2.1551 -5.5690 2.3393 28 6 0.8722 -5.2015 1.4979 29 1 -0.3634 -0.1139 -1.0213 30 1 -0.3634 -0.8275 0.6093 31 1 -0.3633 0.9414 0.4121 32 1 1.6936 2.1313 -0.0007 33 1 4.5071 2.6451 0.8833 34 1 4.1848 -2.0809 0.0010 35 1 3.1781 -3.6225 0.2225 36 1 -0.0493 -5.8639 -1.0100 37 1 0.3719 -4.2043 -1.5309 38 1 1.4723 -6.6631 -2.5632 39 1 2.0467 -5.0075 -2.9173 40 1 3.6097 -6.9002 -1.5800 41 1 3.7827 -5.1343 -1.3075 42 1 4.5674 -5.6171 4.7751 43 1 1.9236 -6.3672 3.0446 44 1 2.5121 -4.6889 2.8742 45 1 0.3762 -4.3106 1.8831 46 1 0.1815 -6.0433 1.4478 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992178494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:21 Heat of formation + Delta-G solvation = 4.370637 kcal Electronic energy + Delta-G solvation = -29840.182052 eV Core-core repulsion = 25924.373895 eV Total energy + Delta-G solvation = -3915.808157 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.02698 -40.17612 -38.30500 -36.96619 -34.48354 -34.01172 -33.09900 -31.84648 -30.67234 -29.57878 -27.94679 -26.95904 -25.77990 -24.35713 -24.07958 -22.44501 -21.14329 -20.52296 -19.68262 -18.84101 -18.54268 -17.66025 -16.99347 -16.51699 -15.94545 -15.70951 -15.08418 -14.86850 -14.60407 -14.49986 -14.09881 -13.96017 -13.74046 -13.26046 -13.01749 -12.80369 -12.63063 -12.59175 -12.38688 -12.32247 -11.90229 -11.78967 -11.45341 -11.41775 -11.05151 -10.93958 -10.81912 -10.54029 -10.33939 -10.07414 -9.99274 -9.84425 -9.73499 -9.66195 -9.41668 -9.14544 -9.02599 -8.72960 -8.50538 -6.93122 -5.80729 -3.15855 0.51962 1.07092 2.90965 3.35082 3.39365 3.41328 3.42616 3.50758 3.80549 4.40542 4.43452 4.59720 4.61227 4.74101 4.97490 5.10940 5.21069 5.22942 5.39815 5.43529 5.51498 5.56421 5.68956 5.70132 5.70784 5.76697 5.88456 5.93972 5.97002 6.12687 6.19026 6.25075 6.29837 6.34688 6.40790 6.42879 6.47141 6.59603 6.75942 6.86607 7.12288 7.26066 7.45543 7.53948 7.71517 7.73121 7.94483 8.13203 8.54833 9.07300 9.73771 10.42024 11.31267 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010323 B = 0.004779 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.824518 B = 5857.724404 C = 7426.600374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.031 3.969 3 C -0.202 4.202 4 C 0.330 3.670 5 O -0.483 6.483 6 N -0.510 5.510 7 C 0.169 3.831 8 C -0.197 4.197 9 C 0.563 3.437 10 O -0.539 6.539 11 N -0.682 5.682 12 C 0.132 3.868 13 C -0.115 4.115 14 C -0.117 4.117 15 C -0.115 4.115 16 C 0.159 3.841 17 H 0.025 0.975 18 N -0.586 5.586 19 C -0.233 4.233 20 H 0.080 0.920 21 C -0.002 4.002 22 N -0.918 5.918 23 Si 0.908 3.092 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.178 3.822 28 C -0.140 4.140 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.144 0.856 33 H 0.403 0.597 34 H 0.167 0.833 35 H 0.404 0.596 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.253 0.747 43 H 0.036 0.964 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.343 10.290 -8.187 14.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.023 3.977 3 C -0.223 4.223 4 C 0.152 3.848 5 O -0.291 6.291 6 N -0.228 5.228 7 C 0.011 3.989 8 C -0.202 4.202 9 C 0.350 3.650 10 O -0.419 6.419 11 N -0.332 5.332 12 C 0.045 3.955 13 C -0.153 4.153 14 C -0.155 4.155 15 C -0.153 4.153 16 C 0.048 3.952 17 H 0.042 0.958 18 N -0.309 5.309 19 C -0.361 4.361 20 H 0.098 0.902 21 C -0.199 4.199 22 N -0.564 5.564 23 Si 0.739 3.261 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.054 3.946 28 C -0.179 4.179 29 H 0.100 0.900 30 H 0.122 0.878 31 H 0.080 0.920 32 H 0.162 0.838 33 H 0.261 0.739 34 H 0.184 0.816 35 H 0.241 0.759 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.136 10.241 -8.635 14.734 hybrid contribution 0.841 -0.041 0.903 1.235 sum -5.296 10.200 -7.732 13.851 Atomic orbital electron populations 1.21099 0.88752 1.03631 1.04212 1.20348 0.97626 0.90593 0.89116 1.21947 0.93683 0.99464 1.07191 1.19373 0.87095 0.85246 0.93116 1.84698 1.76060 1.34201 1.34121 1.67184 1.42057 0.98214 1.15378 1.22847 0.90547 0.95270 0.90268 1.21025 0.95040 0.94975 1.09184 1.17772 0.86957 0.83174 0.77143 1.90671 1.13275 1.87039 1.50944 1.45684 1.11035 1.04776 1.71750 1.21578 0.95478 0.84327 0.94140 1.21908 0.97321 1.01602 0.94494 1.22820 0.94981 1.00112 0.97621 1.21837 0.96836 1.01458 0.95193 1.20866 0.92329 0.93922 0.88059 0.95819 1.43691 1.06520 1.78346 1.02366 1.19015 0.83541 1.39222 0.94343 0.90210 1.24789 0.97998 1.01340 0.95809 1.69908 1.33731 1.51967 1.00837 0.86180 0.84610 0.77952 0.77379 1.21507 1.21708 1.20660 1.22285 0.83499 0.99003 0.89793 1.23054 0.98851 1.00630 0.95376 0.89972 0.87756 0.92047 0.83814 0.73868 0.81640 0.75926 0.91186 0.90495 0.91973 0.92320 0.91744 0.91652 0.93631 0.94588 0.91686 0.91582 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 8.85 36.00 0.32 -1.07 16 2 C 0.03 0.41 5.95 -103.96 -0.62 -0.21 16 3 C -0.20 -2.32 9.70 -39.34 -0.38 -2.70 16 4 C 0.33 4.26 7.74 -16.96 -0.13 4.13 16 5 O -0.48 -5.20 13.55 -18.18 -0.25 -5.44 16 6 N -0.51 -7.65 10.37 -12.97 -0.13 -7.78 16 7 C 0.17 2.48 10.69 -17.14 -0.18 2.30 16 8 C -0.20 -2.88 5.89 -104.82 -0.62 -3.50 16 9 C 0.56 9.12 7.12 -12.43 -0.09 9.03 16 10 O -0.54 -9.35 11.60 5.30 0.06 -9.28 16 11 N -0.68 -11.41 4.26 -47.58 -0.20 -11.61 16 12 C 0.13 2.29 0.42 -130.70 -0.06 2.23 16 13 C -0.11 -1.74 5.98 -26.18 -0.16 -1.90 16 14 C -0.12 -1.61 6.94 -23.53 -0.16 -1.77 16 15 C -0.11 -1.84 6.45 -26.21 -0.17 -2.01 16 16 C 0.16 3.02 2.62 -68.72 -0.18 2.84 16 17 H 0.02 0.49 7.99 -51.93 -0.42 0.07 16 18 N -0.59 -13.56 3.04 -161.70 -0.49 -14.05 16 19 C -0.23 -5.97 10.28 -15.06 -0.15 -6.12 16 20 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 21 C 0.00 -0.06 5.49 -17.43 -0.10 -0.16 16 22 N -0.92 -25.61 10.55 55.49 0.59 -25.03 16 23 Si 0.91 21.19 29.55 -169.99 -5.02 16.16 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 C 0.18 4.08 5.37 0.11 0.00 4.08 16 28 C -0.14 -2.63 6.41 -24.57 -0.16 -2.78 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.10 1.42 5.93 -51.93 -0.31 1.11 16 31 H 0.06 0.55 8.06 -51.93 -0.42 0.13 16 32 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.40 2.30 9.06 45.56 0.41 2.71 16 34 H 0.17 2.31 6.46 -52.48 -0.34 1.97 16 35 H 0.40 6.93 6.04 -40.82 -0.25 6.68 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.22 6.20 -51.93 -0.32 0.90 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 1.05 7.52 -51.93 -0.39 0.66 16 42 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.04 0.91 7.98 -51.93 -0.41 0.49 16 44 H 0.06 1.66 7.05 -51.93 -0.37 1.30 16 45 H 0.07 1.25 7.78 -51.93 -0.40 0.85 16 46 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -30.55 363.26 -8.53 -39.08 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -5.72 Total: 10.09 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -2.83 Total: 2.39 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -0.24 Total: -58.48 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.18 Total: -14.73 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.55 -8.53 -39.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992178494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.449 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds