Wall clock time and date at job start Tue Mar 31 2020 17:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37993 * 120.82437 * 2 1 4 4 C 1.39130 * 119.26681 * 179.97438 * 3 2 1 5 5 O 1.35497 * 119.52330 * 179.97438 * 4 3 2 6 6 N 1.32431 * 120.95081 * 0.02562 * 4 3 2 7 7 C 1.31641 * 121.79569 * 359.97438 * 6 4 3 8 8 C 1.39558 * 120.62887 * 359.73738 * 7 6 4 9 9 C 1.47624 * 120.50130 * 180.26552 * 8 7 6 10 10 O 1.21577 * 120.00053 * 186.12278 * 9 8 7 11 11 N 1.34770 * 119.99715 * 6.11758 * 9 8 7 12 12 C 1.46504 * 120.00107 * 179.97438 * 11 9 8 13 13 C 1.51231 * 111.07014 * 61.01521 * 12 11 9 14 14 C 1.55699 * 104.60591 * 83.89382 * 13 12 11 15 15 C 1.56282 * 105.93810 * 7.24796 * 14 13 12 16 16 C 1.50521 * 101.75485 * 24.25567 * 15 14 13 17 17 H 1.08994 * 108.54927 * 67.04619 * 16 15 14 18 18 N 1.42695 * 127.76754 * 198.90612 * 16 15 14 19 19 C 1.36940 * 127.10198 * 331.50611 * 18 16 15 20 20 H 1.07997 * 120.00098 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99754 * 179.97438 * 19 18 16 22 22 N 1.31615 * 120.00143 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99855 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47080 * 89.99995 * 23 21 19 25 25 H 1.48495 * 109.47315 * 210.00395 * 23 21 19 26 26 H 1.48505 * 109.47094 * 330.00440 * 23 21 19 27 27 C 1.49290 * 105.79738 * 151.48461 * 18 16 15 28 28 C 1.52132 * 111.09634 * 281.64510 * 12 11 9 29 29 H 1.08996 * 109.47495 * 96.36114 * 1 2 3 30 30 H 1.08999 * 109.47262 * 216.36281 * 1 2 3 31 31 H 1.09000 * 109.46752 * 336.35942 * 1 2 3 32 32 H 1.07996 * 120.36625 * 359.95564 * 3 2 1 33 33 H 0.96705 * 114.00101 * 90.00007 * 5 4 3 34 34 H 1.08004 * 119.68106 * 180.02562 * 7 6 4 35 35 H 0.97005 * 120.00432 * 0.02562 * 11 9 8 36 36 H 1.09001 * 110.41266 * 202.67347 * 13 12 11 37 37 H 1.08999 * 110.41204 * 324.99628 * 13 12 11 38 38 H 1.08999 * 110.15476 * 126.36406 * 14 13 12 39 39 H 1.08996 * 110.15638 * 248.12610 * 14 13 12 40 40 H 1.08997 * 110.97012 * 142.37354 * 15 14 13 41 41 H 1.09006 * 110.96877 * 266.10642 * 15 14 13 42 42 H 0.97004 * 119.99921 * 180.02562 * 22 21 19 43 43 H 1.09004 * 110.04921 * 110.59956 * 27 18 16 44 44 H 1.08998 * 110.05120 * 232.08034 * 27 18 16 45 45 H 1.09000 * 111.14715 * 43.90025 * 28 12 11 46 46 H 1.09001 * 111.15092 * 168.13142 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1472 0.0005 5 8 4.3043 2.3076 0.0000 6 7 4.2548 -0.0066 0.0005 7 6 3.6204 -1.1601 0.0005 8 6 2.2255 -1.2044 0.0060 9 6 1.5170 -2.4995 0.0119 10 8 0.3064 -2.5306 -0.0956 11 7 2.2122 -3.6473 0.1364 12 6 1.5091 -4.9326 0.1428 13 6 0.7616 -5.1498 -1.1537 14 6 1.8279 -5.7285 -2.1296 15 6 3.1046 -5.9868 -1.2660 16 6 2.5171 -6.1422 0.1111 17 1 1.9212 -7.0546 0.1329 18 7 3.1882 -6.0301 1.3653 19 6 4.5077 -6.2912 1.6224 20 1 5.1581 -6.6208 0.8258 21 6 5.0093 -6.1313 2.9068 22 7 4.2168 -5.7292 3.8776 23 14 6.8094 -6.4868 3.2574 24 1 7.6060 -5.2492 3.0597 25 1 6.9581 -6.9524 4.6596 26 1 7.2952 -7.5413 2.3315 27 6 2.1551 -5.5690 2.3393 28 6 0.8722 -5.2015 1.4979 29 1 -0.3634 -0.1139 -1.0213 30 1 -0.3634 -0.8275 0.6093 31 1 -0.3633 0.9414 0.4121 32 1 1.6936 2.1313 -0.0007 33 1 4.5071 2.6451 0.8833 34 1 4.1848 -2.0809 0.0010 35 1 3.1781 -3.6225 0.2225 36 1 -0.0493 -5.8639 -1.0100 37 1 0.3719 -4.2043 -1.5309 38 1 1.4723 -6.6631 -2.5632 39 1 2.0467 -5.0075 -2.9173 40 1 3.6097 -6.9002 -1.5800 41 1 3.7827 -5.1343 -1.3075 42 1 4.5674 -5.6171 4.7751 43 1 1.9236 -6.3672 3.0446 44 1 2.5121 -4.6889 2.8742 45 1 0.3762 -4.3106 1.8831 46 1 0.1815 -6.0433 1.4478 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992178494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:20 Heat of formation + Delta-G solvation = -17.697243 kcal Electronic energy + Delta-G solvation = -29841.138987 eV Core-core repulsion = 25924.373895 eV Total energy + Delta-G solvation = -3916.765093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.23971 -41.40428 -39.55227 -37.95974 -36.14129 -35.09624 -34.35569 -33.59174 -32.06116 -30.94125 -28.92421 -28.51472 -27.23175 -25.96156 -25.39919 -23.48186 -22.43827 -22.01088 -21.23869 -20.17801 -19.46009 -18.90388 -18.32433 -18.06585 -17.27007 -16.90274 -16.42073 -16.24675 -15.99243 -15.73622 -15.70727 -15.31766 -15.11966 -14.38047 -14.20738 -14.05898 -13.96005 -13.75488 -13.56766 -13.46472 -13.30344 -13.03129 -12.95012 -12.84157 -12.70737 -12.61693 -12.17584 -12.07634 -12.00673 -11.78391 -11.54163 -11.35286 -11.06246 -10.79410 -10.68833 -10.67035 -10.35196 -10.11303 -9.84038 -8.85914 -7.83429 -5.18549 -0.52006 0.06743 1.48405 1.48964 1.56854 1.77439 2.18859 2.47871 2.50870 2.72353 3.11946 3.37025 3.44774 3.60060 3.65867 3.75794 3.90824 3.94638 4.12500 4.19630 4.27970 4.41189 4.43780 4.44429 4.60502 4.63530 4.65870 4.68704 4.80653 4.83180 4.95398 4.98205 5.05677 5.09622 5.14670 5.24909 5.28963 5.31884 5.48498 5.50900 5.57741 5.62297 5.69764 5.81244 6.19302 6.50553 6.61658 6.75268 7.06210 7.24759 7.78378 8.49934 9.28075 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010323 B = 0.004779 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.824518 B = 5857.724404 C = 7426.600374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.028 3.972 3 C -0.188 4.188 4 C 0.329 3.671 5 O -0.486 6.486 6 N -0.537 5.537 7 C 0.163 3.837 8 C -0.213 4.213 9 C 0.565 3.435 10 O -0.551 6.551 11 N -0.687 5.687 12 C 0.141 3.859 13 C -0.109 4.109 14 C -0.104 4.104 15 C -0.111 4.111 16 C 0.146 3.854 17 H 0.020 0.980 18 N -0.598 5.598 19 C -0.230 4.230 20 H 0.088 0.912 21 C -0.059 4.059 22 N -0.949 5.949 23 Si 0.968 3.032 24 H -0.287 1.287 25 H -0.301 1.301 26 H -0.269 1.269 27 C 0.189 3.811 28 C -0.127 4.127 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.179 0.821 33 H 0.425 0.575 34 H 0.162 0.838 35 H 0.400 0.600 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.245 0.755 43 H 0.001 0.999 44 H 0.031 0.969 45 H 0.062 0.938 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.839 11.542 -10.279 16.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.020 3.980 3 C -0.209 4.209 4 C 0.151 3.849 5 O -0.297 6.297 6 N -0.257 5.257 7 C 0.005 3.995 8 C -0.219 4.219 9 C 0.352 3.648 10 O -0.432 6.432 11 N -0.336 5.336 12 C 0.054 3.946 13 C -0.148 4.148 14 C -0.142 4.142 15 C -0.150 4.150 16 C 0.038 3.962 17 H 0.038 0.962 18 N -0.322 5.322 19 C -0.359 4.359 20 H 0.105 0.895 21 C -0.252 4.252 22 N -0.598 5.598 23 Si 0.797 3.203 24 H -0.215 1.215 25 H -0.228 1.228 26 H -0.194 1.194 27 C 0.064 3.936 28 C -0.166 4.166 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.196 0.804 33 H 0.287 0.713 34 H 0.179 0.821 35 H 0.236 0.764 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.054 0.946 43 H 0.020 0.980 44 H 0.049 0.951 45 H 0.081 0.919 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.638 11.502 -10.759 17.092 hybrid contribution 0.988 -0.354 1.562 1.882 sum -5.651 11.149 -9.198 15.518 Atomic orbital electron populations 1.21058 0.87620 1.04285 1.04152 1.20611 0.98460 0.90415 0.88516 1.22207 0.93033 1.00270 1.05391 1.19621 0.87896 0.85193 0.92170 1.84654 1.75858 1.33103 1.36115 1.67170 1.42965 0.98944 1.16602 1.22778 0.90666 0.95357 0.90744 1.20947 0.95065 0.94876 1.10970 1.17973 0.86833 0.83475 0.76474 1.90664 1.13701 1.87297 1.51529 1.45708 1.10824 1.04930 1.72179 1.21524 0.94795 0.83980 0.94326 1.21897 0.97835 1.01881 0.93140 1.22756 0.92941 1.01500 0.97007 1.21850 0.98023 1.01664 0.93426 1.21070 0.92742 0.94427 0.88011 0.96225 1.43795 1.06009 1.78150 1.04206 1.19366 0.84744 1.37434 0.94322 0.89466 1.25498 1.01419 1.02337 0.95965 1.70116 1.35080 1.53898 1.00712 0.85229 0.80622 0.77828 0.76574 1.21451 1.22804 1.19416 1.21970 0.85337 0.96255 0.89998 1.22906 0.97025 1.00973 0.95720 0.89563 0.90079 0.89057 0.80360 0.71293 0.82080 0.76363 0.89998 0.90882 0.89811 0.90851 0.91152 0.91971 0.94596 0.98032 0.95097 0.91900 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.85 71.23 0.63 -1.77 16 2 C 0.03 0.68 5.95 -19.43 -0.12 0.56 16 3 C -0.19 -3.81 9.70 22.43 0.22 -3.59 16 4 C 0.33 7.89 7.74 84.82 0.66 8.55 16 5 O -0.49 -9.28 13.55 -87.98 -1.19 -10.48 16 6 N -0.54 -15.83 10.37 -307.81 -3.19 -19.02 16 7 C 0.16 4.81 10.69 85.04 0.91 5.72 16 8 C -0.21 -6.17 5.89 -19.99 -0.12 -6.28 16 9 C 0.56 18.20 7.12 86.72 0.62 18.82 16 10 O -0.55 -18.76 11.60 -3.96 -0.05 -18.81 16 11 N -0.69 -23.06 4.26 -422.70 -1.80 -24.86 16 12 C 0.14 4.81 0.42 4.32 0.00 4.81 16 13 C -0.11 -3.07 5.98 30.95 0.18 -2.88 16 14 C -0.10 -2.55 6.94 32.67 0.23 -2.33 16 15 C -0.11 -3.38 6.45 30.93 0.20 -3.18 16 16 C 0.15 5.51 2.62 46.47 0.12 5.63 16 17 H 0.02 0.79 7.99 -2.39 -0.02 0.77 16 18 N -0.60 -28.28 3.04 -665.50 -2.02 -30.30 16 19 C -0.23 -11.93 10.28 84.03 0.86 -11.07 16 20 H 0.09 4.31 7.83 -2.91 -0.02 4.29 16 21 C -0.06 -3.20 5.49 84.86 0.47 -2.73 16 22 N -0.95 -55.29 10.55 21.65 0.23 -55.06 16 23 Si 0.97 44.41 29.55 68.60 2.03 46.43 16 24 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 25 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 C 0.19 9.04 5.37 87.52 0.47 9.51 16 28 C -0.13 -4.82 6.41 31.99 0.21 -4.62 16 29 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.08 2.13 5.93 -2.39 -0.01 2.11 16 31 H 0.09 1.33 8.06 -2.39 -0.02 1.31 16 32 H 0.18 2.32 8.06 -2.91 -0.02 2.29 16 33 H 0.42 3.77 9.06 -74.05 -0.67 3.10 16 34 H 0.16 4.69 6.46 -2.91 -0.02 4.67 16 35 H 0.40 14.05 6.04 -92.70 -0.56 13.49 16 36 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.07 2.17 6.20 -2.39 -0.01 2.15 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.06 1.93 7.52 -2.38 -0.02 1.91 16 42 H 0.24 14.09 8.31 -92.71 -0.77 13.32 16 43 H 0.00 0.08 7.98 -2.38 -0.02 0.06 16 44 H 0.03 1.67 7.05 -2.39 -0.02 1.66 16 45 H 0.06 2.42 7.78 -2.39 -0.02 2.40 16 46 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -67.56 363.26 -0.66 -68.22 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: -0.20 Total: 28.72 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 5.54 Total: 15.15 kcal Atomic # 7 Polarization: -122.46 SS G_CDS: -6.79 Total: -129.25 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -1.24 Total: -29.28 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -67.56 -0.66 -68.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992178494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.526 kcal (2) G-P(sol) polarization free energy of solvation -67.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds