Wall clock time and date at job start Tue Mar 31 2020 17:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37996 * 120.82408 * 2 1 4 4 C 1.39127 * 119.26500 * 180.02562 * 3 2 1 5 5 O 1.35496 * 119.52490 * 179.97438 * 4 3 2 6 6 N 1.32438 * 120.94925 * 0.02562 * 4 3 2 7 7 C 1.31638 * 121.79883 * 359.69763 * 6 4 3 8 8 C 1.39568 * 120.62545 * 0.58766 * 7 6 4 9 9 C 1.47620 * 120.49532 * 179.69682 * 8 7 6 10 10 O 1.21578 * 119.99255 * 173.86231 * 9 8 7 11 11 N 1.34768 * 120.00229 * 353.86968 * 9 8 7 12 12 C 1.46504 * 119.99861 * 179.97438 * 11 9 8 13 13 C 1.53578 * 112.24242 * 59.64681 * 12 11 9 14 14 C 1.54218 * 106.67734 * 121.16418 * 13 12 11 15 15 C 1.54761 * 104.15590 * 24.94481 * 14 13 12 16 16 C 1.54773 * 103.21384 * 322.19385 * 15 14 13 17 17 H 1.09003 * 111.86186 * 275.06885 * 16 15 14 18 18 N 1.46974 * 108.69184 * 151.12289 * 16 15 14 19 19 C 1.36939 * 125.57893 * 64.87599 * 18 16 15 20 20 H 1.08000 * 119.99976 * 0.02562 * 19 18 16 21 21 C 1.38818 * 120.00027 * 180.02562 * 19 18 16 22 22 N 1.31618 * 119.99789 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99945 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47303 * 60.00498 * 23 21 19 25 25 H 1.48501 * 109.46889 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47331 * 300.00132 * 23 21 19 27 27 C 1.49315 * 107.79378 * 246.05428 * 18 16 15 28 28 C 1.54866 * 105.19351 * 24.14021 * 27 18 16 29 29 H 1.09004 * 109.47304 * 263.68419 * 1 2 3 30 30 H 1.09006 * 109.46952 * 23.67597 * 1 2 3 31 31 H 1.08996 * 109.47857 * 143.68100 * 1 2 3 32 32 H 1.07994 * 120.36588 * 0.02562 * 3 2 1 33 33 H 0.96694 * 114.00155 * 90.00293 * 5 4 3 34 34 H 1.08006 * 119.68628 * 180.29308 * 7 6 4 35 35 H 0.97003 * 120.00239 * 359.97438 * 11 9 8 36 36 H 1.08998 * 110.01563 * 1.85667 * 13 12 11 37 37 H 1.08999 * 110.05782 * 240.48827 * 13 12 11 38 38 H 1.09005 * 110.49249 * 266.27947 * 14 13 12 39 39 H 1.08995 * 110.61007 * 143.67421 * 14 13 12 40 40 H 1.09005 * 110.66800 * 203.76058 * 15 14 13 41 41 H 1.08999 * 110.66776 * 80.62246 * 15 14 13 42 42 H 0.96996 * 119.99554 * 180.02562 * 22 21 19 43 43 H 1.09002 * 109.99223 * 265.28505 * 27 18 16 44 44 H 1.08993 * 110.47745 * 143.24502 * 27 18 16 45 45 H 1.08998 * 110.97013 * 205.04023 * 28 27 18 46 46 H 1.08997 * 110.99971 * 81.28547 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1472 -0.0005 5 8 4.3044 2.3076 -0.0011 6 7 4.2548 -0.0067 -0.0016 7 6 3.6204 -1.1602 0.0038 8 6 2.2254 -1.2044 -0.0015 9 6 1.5170 -2.4995 -0.0022 10 8 0.3064 -2.5301 0.1058 11 7 2.2121 -3.6478 -0.1224 12 6 1.5090 -4.9331 -0.1225 13 6 0.4925 -5.0396 -1.2687 14 6 0.9044 -6.2623 -2.1134 15 6 1.6886 -7.1584 -1.1249 16 6 2.4766 -6.1367 -0.2701 17 1 3.4149 -5.8487 -0.7443 18 7 2.6932 -6.7085 1.0664 19 6 3.4477 -7.8165 1.3463 20 1 3.9448 -8.3471 0.5477 21 6 3.5737 -8.2576 2.6565 22 7 2.9675 -7.6112 3.6296 23 14 4.6036 -9.7685 3.0383 24 1 6.0039 -9.5364 2.6019 25 1 4.5770 -10.0291 4.5000 26 1 4.0481 -10.9415 2.3167 27 6 1.9237 -5.8846 2.0454 28 6 0.7920 -5.2246 1.2195 29 1 -0.3634 -0.1131 1.0214 30 1 -0.3633 0.9412 -0.4127 31 1 -0.3635 -0.8280 -0.6086 32 1 1.6937 2.1313 0.0004 33 1 4.5079 2.6446 0.8821 34 1 4.1848 -2.0810 0.0076 35 1 3.1780 -3.6234 -0.2088 36 1 0.5227 -4.1370 -1.8792 37 1 -0.5103 -5.1845 -0.8669 38 1 1.5443 -5.9563 -2.9411 39 1 0.0238 -6.7852 -2.4864 40 1 2.3704 -7.8182 -1.6616 41 1 1.0044 -7.7346 -0.5021 42 1 3.0558 -7.9193 4.5451 43 1 2.5701 -5.1222 2.4802 44 1 1.5034 -6.5160 2.8281 45 1 0.4536 -4.3013 1.6895 46 1 -0.0396 -5.9143 1.0755 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992178498.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:25 Heat of formation + Delta-G solvation = -7.685873 kcal Electronic energy + Delta-G solvation = -29259.280970 eV Core-core repulsion = 25342.950003 eV Total energy + Delta-G solvation = -3916.330967 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.08663 -39.95265 -38.30045 -37.09959 -34.44448 -33.99682 -33.40199 -31.60518 -30.78580 -29.57808 -28.10809 -26.72337 -26.01465 -24.40378 -23.84593 -22.54211 -21.46151 -20.04747 -19.84588 -18.91163 -18.64671 -17.63862 -17.22856 -16.89421 -16.11946 -15.61628 -15.11663 -15.07726 -14.85140 -14.36296 -14.14349 -13.62245 -13.43047 -13.40853 -13.11400 -12.94121 -12.81837 -12.71205 -12.46966 -12.19203 -11.95572 -11.85141 -11.61945 -11.20576 -10.98473 -10.84422 -10.67779 -10.55187 -10.21387 -10.13873 -10.01564 -9.91645 -9.80427 -9.74950 -9.58118 -9.28767 -9.21724 -8.68980 -8.60186 -6.87306 -5.68354 -3.08696 0.36160 0.92299 2.74639 3.22999 3.29750 3.39165 3.43879 3.44863 3.63343 4.27551 4.45027 4.46200 4.57312 4.75447 4.92077 4.98469 5.12885 5.23307 5.29370 5.40070 5.50319 5.54038 5.58694 5.60981 5.76712 5.81958 5.84689 5.96236 6.05411 6.08559 6.13257 6.18221 6.31903 6.33184 6.38540 6.49917 6.56076 6.72828 6.75372 6.94258 7.07913 7.13244 7.48010 7.57008 7.60057 7.69198 7.82352 8.28445 8.35123 9.16060 9.79069 10.45503 11.37472 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014562 B = 0.003422 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.346908 B = 8180.373333 C = 9149.245834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.033 3.967 3 C -0.200 4.200 4 C 0.331 3.669 5 O -0.482 6.482 6 N -0.511 5.511 7 C 0.167 3.833 8 C -0.199 4.199 9 C 0.564 3.436 10 O -0.527 6.527 11 N -0.698 5.698 12 C 0.162 3.838 13 C -0.109 4.109 14 C -0.125 4.125 15 C -0.130 4.130 16 C 0.161 3.839 17 H 0.046 0.954 18 N -0.596 5.596 19 C -0.220 4.220 20 H 0.077 0.923 21 C -0.009 4.009 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.153 3.847 28 C -0.140 4.140 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.146 0.854 33 H 0.404 0.596 34 H 0.166 0.834 35 H 0.398 0.602 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.252 0.748 43 H 0.013 0.987 44 H 0.102 0.898 45 H 0.067 0.933 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.555 15.671 -8.094 17.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.025 3.975 3 C -0.221 4.221 4 C 0.154 3.846 5 O -0.290 6.290 6 N -0.230 5.230 7 C 0.008 3.992 8 C -0.204 4.204 9 C 0.350 3.650 10 O -0.405 6.405 11 N -0.347 5.347 12 C 0.076 3.924 13 C -0.148 4.148 14 C -0.164 4.164 15 C -0.170 4.170 16 C 0.052 3.948 17 H 0.063 0.937 18 N -0.321 5.321 19 C -0.348 4.348 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.743 3.257 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.212 1.212 27 C 0.029 3.971 28 C -0.179 4.179 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.163 0.837 33 H 0.262 0.738 34 H 0.183 0.817 35 H 0.234 0.766 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.031 0.969 44 H 0.120 0.880 45 H 0.086 0.914 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.452 15.535 -8.384 17.987 hybrid contribution 0.478 -0.566 0.717 1.031 sum -2.974 14.968 -7.666 17.078 Atomic orbital electron populations 1.21122 0.88626 1.03644 1.04461 1.20376 0.97720 0.90561 0.88827 1.21975 0.93686 0.99543 1.06883 1.19370 0.87113 0.85228 0.92926 1.84702 1.76004 1.34145 1.34168 1.67175 1.42056 0.98233 1.15495 1.22799 0.90457 0.95265 0.90701 1.21006 0.95051 0.94884 1.09472 1.17776 0.87097 0.83087 0.76999 1.90720 1.13245 1.86964 1.49564 1.45847 1.10493 1.05256 1.73136 1.21655 0.92835 0.81416 0.96493 1.22257 0.98689 0.97854 0.96017 1.22368 0.99683 0.96433 0.97867 1.22966 0.99010 0.97929 0.97123 1.21779 0.94158 0.90104 0.88751 0.93677 1.44918 1.56433 1.30651 1.00095 1.18958 1.21926 1.01446 0.92491 0.90493 1.24762 1.00731 0.99353 0.95587 1.69800 1.46905 1.40830 0.99338 0.86197 0.79904 0.82576 0.77065 1.21256 1.21654 1.21202 1.22192 0.89422 0.92991 0.92501 1.23292 0.99092 1.00371 0.95156 0.89702 0.91924 0.87819 0.83671 0.73769 0.81741 0.76639 0.92272 0.91064 0.92371 0.92234 0.92322 0.90743 0.93709 0.96857 0.88012 0.91426 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 8.84 36.01 0.32 -0.95 16 2 C 0.03 0.38 5.95 -103.96 -0.62 -0.24 16 3 C -0.20 -1.99 9.70 -39.34 -0.38 -2.37 16 4 C 0.33 3.71 7.74 -16.96 -0.13 3.58 16 5 O -0.48 -4.45 13.55 -18.18 -0.25 -4.70 16 6 N -0.51 -6.58 10.37 -12.96 -0.13 -6.71 16 7 C 0.17 2.04 10.69 -17.14 -0.18 1.85 16 8 C -0.20 -2.54 5.89 -104.82 -0.62 -3.15 16 9 C 0.56 8.29 6.88 -12.44 -0.09 8.21 16 10 O -0.53 -8.65 11.37 5.30 0.06 -8.59 16 11 N -0.70 -10.41 5.20 -46.35 -0.24 -10.65 16 12 C 0.16 2.75 0.74 -129.37 -0.10 2.66 16 13 C -0.11 -1.68 5.22 -25.79 -0.13 -1.81 16 14 C -0.13 -1.80 6.84 -25.17 -0.17 -1.97 16 15 C -0.13 -2.28 6.19 -24.87 -0.15 -2.43 16 16 C 0.16 3.07 3.60 -65.61 -0.24 2.84 16 17 H 0.05 0.85 7.99 -51.93 -0.41 0.44 16 18 N -0.60 -14.23 3.11 -159.55 -0.50 -14.73 16 19 C -0.22 -5.82 10.00 -15.06 -0.15 -5.97 16 20 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 21 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 22 N -0.92 -26.23 10.21 55.49 0.57 -25.66 16 23 Si 0.91 21.59 29.55 -169.99 -5.02 16.56 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.15 3.60 5.98 -1.49 -0.01 3.59 16 28 C -0.14 -2.71 5.77 -24.73 -0.14 -2.86 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 31 H 0.10 1.26 5.94 -51.93 -0.31 0.96 16 32 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.40 1.66 9.06 45.56 0.41 2.07 16 34 H 0.17 1.73 6.46 -52.48 -0.34 1.39 16 35 H 0.40 5.31 6.59 -40.82 -0.27 5.04 16 36 H 0.06 0.89 7.40 -51.93 -0.38 0.50 16 37 H 0.07 1.13 7.37 -51.93 -0.38 0.74 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 1.45 8.10 -51.93 -0.42 1.03 16 42 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.10 2.73 5.99 -51.93 -0.31 2.42 16 45 H 0.07 1.32 6.84 -51.93 -0.36 0.96 16 46 H 0.07 1.35 7.62 -51.93 -0.40 0.96 16 LS Contribution 362.52 15.07 5.46 5.46 Total: -1.00 -31.74 362.52 -8.61 -40.35 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -5.67 Total: 8.02 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -2.89 Total: 0.65 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: -0.31 Total: -57.75 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.19 Total: -13.29 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.74 -8.61 -40.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992178498.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.662 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds