Wall clock time and date at job start Tue Mar 31 2020 17:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37996 * 120.82408 * 2 1 4 4 C 1.39127 * 119.26500 * 180.02562 * 3 2 1 5 5 O 1.35496 * 119.52490 * 179.97438 * 4 3 2 6 6 N 1.32438 * 120.94925 * 0.02562 * 4 3 2 7 7 C 1.31638 * 121.79883 * 359.69763 * 6 4 3 8 8 C 1.39568 * 120.62545 * 0.58766 * 7 6 4 9 9 C 1.47620 * 120.49532 * 179.69682 * 8 7 6 10 10 O 1.21578 * 119.99255 * 173.86231 * 9 8 7 11 11 N 1.34768 * 120.00229 * 353.86968 * 9 8 7 12 12 C 1.46504 * 119.99861 * 179.97438 * 11 9 8 13 13 C 1.53578 * 112.24242 * 59.64681 * 12 11 9 14 14 C 1.54218 * 106.67734 * 121.16418 * 13 12 11 15 15 C 1.54761 * 104.15590 * 24.94481 * 14 13 12 16 16 C 1.54773 * 103.21384 * 322.19385 * 15 14 13 17 17 H 1.09003 * 111.86186 * 275.06885 * 16 15 14 18 18 N 1.46974 * 108.69184 * 151.12289 * 16 15 14 19 19 C 1.36939 * 125.57893 * 64.87599 * 18 16 15 20 20 H 1.08000 * 119.99976 * 0.02562 * 19 18 16 21 21 C 1.38818 * 120.00027 * 180.02562 * 19 18 16 22 22 N 1.31618 * 119.99789 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99945 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47303 * 60.00498 * 23 21 19 25 25 H 1.48501 * 109.46889 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47331 * 300.00132 * 23 21 19 27 27 C 1.49315 * 107.79378 * 246.05428 * 18 16 15 28 28 C 1.54866 * 105.19351 * 24.14021 * 27 18 16 29 29 H 1.09004 * 109.47304 * 263.68419 * 1 2 3 30 30 H 1.09006 * 109.46952 * 23.67597 * 1 2 3 31 31 H 1.08996 * 109.47857 * 143.68100 * 1 2 3 32 32 H 1.07994 * 120.36588 * 0.02562 * 3 2 1 33 33 H 0.96694 * 114.00155 * 90.00293 * 5 4 3 34 34 H 1.08006 * 119.68628 * 180.29308 * 7 6 4 35 35 H 0.97003 * 120.00239 * 359.97438 * 11 9 8 36 36 H 1.08998 * 110.01563 * 1.85667 * 13 12 11 37 37 H 1.08999 * 110.05782 * 240.48827 * 13 12 11 38 38 H 1.09005 * 110.49249 * 266.27947 * 14 13 12 39 39 H 1.08995 * 110.61007 * 143.67421 * 14 13 12 40 40 H 1.09005 * 110.66800 * 203.76058 * 15 14 13 41 41 H 1.08999 * 110.66776 * 80.62246 * 15 14 13 42 42 H 0.96996 * 119.99554 * 180.02562 * 22 21 19 43 43 H 1.09002 * 109.99223 * 265.28505 * 27 18 16 44 44 H 1.08993 * 110.47745 * 143.24502 * 27 18 16 45 45 H 1.08998 * 110.97013 * 205.04023 * 28 27 18 46 46 H 1.08997 * 110.99971 * 81.28547 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1472 -0.0005 5 8 4.3044 2.3076 -0.0011 6 7 4.2548 -0.0067 -0.0016 7 6 3.6204 -1.1602 0.0038 8 6 2.2254 -1.2044 -0.0015 9 6 1.5170 -2.4995 -0.0022 10 8 0.3064 -2.5301 0.1058 11 7 2.2121 -3.6478 -0.1224 12 6 1.5090 -4.9331 -0.1225 13 6 0.4925 -5.0396 -1.2687 14 6 0.9044 -6.2623 -2.1134 15 6 1.6886 -7.1584 -1.1249 16 6 2.4766 -6.1367 -0.2701 17 1 3.4149 -5.8487 -0.7443 18 7 2.6932 -6.7085 1.0664 19 6 3.4477 -7.8165 1.3463 20 1 3.9448 -8.3471 0.5477 21 6 3.5737 -8.2576 2.6565 22 7 2.9675 -7.6112 3.6296 23 14 4.6036 -9.7685 3.0383 24 1 6.0039 -9.5364 2.6019 25 1 4.5770 -10.0291 4.5000 26 1 4.0481 -10.9415 2.3167 27 6 1.9237 -5.8846 2.0454 28 6 0.7920 -5.2246 1.2195 29 1 -0.3634 -0.1131 1.0214 30 1 -0.3633 0.9412 -0.4127 31 1 -0.3635 -0.8280 -0.6086 32 1 1.6937 2.1313 0.0004 33 1 4.5079 2.6446 0.8821 34 1 4.1848 -2.0810 0.0076 35 1 3.1780 -3.6234 -0.2088 36 1 0.5227 -4.1370 -1.8792 37 1 -0.5103 -5.1845 -0.8669 38 1 1.5443 -5.9563 -2.9411 39 1 0.0238 -6.7852 -2.4864 40 1 2.3704 -7.8182 -1.6616 41 1 1.0044 -7.7346 -0.5021 42 1 3.0558 -7.9193 4.5451 43 1 2.5701 -5.1222 2.4802 44 1 1.5034 -6.5160 2.8281 45 1 0.4536 -4.3013 1.6895 46 1 -0.0396 -5.9143 1.0755 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992178498.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:24 Heat of formation + Delta-G solvation = -31.286638 kcal Electronic energy + Delta-G solvation = -29260.304376 eV Core-core repulsion = 25342.950003 eV Total energy + Delta-G solvation = -3917.354373 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.09929 -41.16440 -39.52169 -37.96726 -35.98133 -35.21476 -34.50499 -33.34718 -32.07782 -30.97390 -28.98520 -28.38022 -27.41349 -25.70220 -25.35365 -23.45729 -22.74635 -21.65934 -21.18135 -20.22642 -19.44411 -18.89776 -18.76419 -18.07702 -17.09944 -16.85446 -16.78873 -16.21146 -16.08472 -15.71481 -15.44811 -15.08713 -14.72738 -14.49953 -14.39843 -14.06833 -13.88170 -13.79900 -13.59029 -13.49710 -13.32661 -13.08078 -12.91503 -12.77644 -12.65626 -12.62498 -12.22533 -12.06268 -11.88337 -11.68282 -11.57161 -11.44236 -11.22856 -10.91746 -10.70926 -10.67545 -10.38421 -10.14825 -9.88007 -8.83776 -7.74377 -5.15593 -0.53384 0.06901 1.49084 1.51182 1.57210 1.73679 2.06784 2.46395 2.52693 2.71048 3.33220 3.38226 3.48513 3.59386 3.64597 3.66532 3.92598 3.94410 3.98773 4.19142 4.38223 4.42485 4.44113 4.48823 4.61000 4.64062 4.66859 4.68423 4.79515 4.83246 4.90303 4.97013 5.06926 5.11307 5.18524 5.24608 5.30991 5.34860 5.46241 5.49779 5.53579 5.65855 5.69783 5.83429 6.28671 6.50150 6.53603 6.75750 7.10695 7.18931 7.80048 8.47681 9.30149 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014562 B = 0.003422 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.346908 B = 8180.373333 C = 9149.245834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.029 3.971 3 C -0.189 4.189 4 C 0.331 3.669 5 O -0.487 6.487 6 N -0.535 5.535 7 C 0.165 3.835 8 C -0.214 4.214 9 C 0.566 3.434 10 O -0.546 6.546 11 N -0.698 5.698 12 C 0.173 3.827 13 C -0.102 4.102 14 C -0.111 4.111 15 C -0.126 4.126 16 C 0.152 3.848 17 H 0.055 0.945 18 N -0.613 5.613 19 C -0.223 4.223 20 H 0.085 0.915 21 C -0.067 4.067 22 N -0.951 5.951 23 Si 0.974 3.026 24 H -0.279 1.279 25 H -0.299 1.299 26 H -0.278 1.278 27 C 0.162 3.838 28 C -0.126 4.126 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.177 0.823 33 H 0.426 0.574 34 H 0.173 0.827 35 H 0.405 0.595 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.244 0.756 43 H -0.012 1.012 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.524 17.132 -10.175 20.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.021 3.979 3 C -0.210 4.210 4 C 0.154 3.846 5 O -0.298 6.298 6 N -0.255 5.255 7 C 0.007 3.993 8 C -0.219 4.219 9 C 0.354 3.646 10 O -0.425 6.425 11 N -0.349 5.349 12 C 0.087 3.913 13 C -0.141 4.141 14 C -0.149 4.149 15 C -0.166 4.166 16 C 0.045 3.955 17 H 0.073 0.927 18 N -0.338 5.338 19 C -0.352 4.352 20 H 0.103 0.897 21 C -0.260 4.260 22 N -0.601 5.601 23 Si 0.803 3.197 24 H -0.205 1.205 25 H -0.226 1.226 26 H -0.204 1.204 27 C 0.038 3.962 28 C -0.166 4.166 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.194 0.806 33 H 0.288 0.712 34 H 0.190 0.810 35 H 0.242 0.758 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.006 0.994 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.408 17.025 -10.498 20.289 hybrid contribution 0.505 -0.900 1.369 1.715 sum -2.903 16.125 -9.129 18.755 Atomic orbital electron populations 1.21073 0.87899 1.04403 1.03990 1.20597 0.98325 0.90580 0.88423 1.22198 0.93162 1.00206 1.05423 1.19609 0.87802 0.85279 0.91932 1.84656 1.75796 1.33198 1.36179 1.67199 1.42794 0.98903 1.16622 1.22896 0.90355 0.95639 0.90456 1.20875 0.95281 0.94323 1.11447 1.18036 0.86914 0.83509 0.76160 1.90714 1.14085 1.87319 1.50400 1.45784 1.10902 1.04700 1.73468 1.21445 0.92481 0.81787 0.95622 1.22192 0.97716 0.98844 0.95378 1.22307 1.00295 0.95023 0.97273 1.22821 0.98731 0.97783 0.97259 1.22032 0.95267 0.91386 0.86834 0.92720 1.45096 1.56218 1.30314 1.02129 1.19332 1.21298 1.01869 0.92654 0.89746 1.25536 1.02483 1.02224 0.95716 1.70051 1.48612 1.42331 0.99129 0.85212 0.78698 0.79650 0.76141 1.20491 1.22580 1.20422 1.21874 0.90055 0.91812 0.92477 1.23091 0.97665 0.99690 0.96110 0.90114 0.89076 0.89706 0.80598 0.71190 0.80996 0.75779 0.91345 0.91480 0.90251 0.90341 0.91786 0.93199 0.94663 0.99404 0.91732 0.91592 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.21 8.84 71.24 0.63 -1.58 16 2 C 0.03 0.61 5.95 -19.43 -0.12 0.49 16 3 C -0.19 -3.25 9.70 22.43 0.22 -3.03 16 4 C 0.33 6.71 7.74 84.82 0.66 7.36 16 5 O -0.49 -7.73 13.55 -87.97 -1.19 -8.93 16 6 N -0.54 -13.11 10.37 -307.79 -3.19 -16.31 16 7 C 0.17 3.91 10.69 85.04 0.91 4.82 16 8 C -0.21 -5.26 5.89 -19.99 -0.12 -5.37 16 9 C 0.57 16.29 6.88 86.72 0.60 16.89 16 10 O -0.55 -17.62 11.37 -3.96 -0.05 -17.66 16 11 N -0.70 -20.42 5.20 -418.84 -2.18 -22.59 16 12 C 0.17 5.79 0.74 5.18 0.00 5.79 16 13 C -0.10 -2.95 5.22 31.20 0.16 -2.79 16 14 C -0.11 -2.87 6.84 31.61 0.22 -2.66 16 15 C -0.13 -4.24 6.19 31.80 0.20 -4.04 16 16 C 0.15 5.72 3.60 46.24 0.17 5.89 16 17 H 0.06 1.99 7.99 -2.39 -0.02 1.97 16 18 N -0.61 -29.82 3.11 -658.70 -2.05 -31.87 16 19 C -0.22 -11.91 10.00 84.03 0.84 -11.07 16 20 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 21 C -0.07 -3.74 5.49 84.86 0.47 -3.27 16 22 N -0.95 -56.42 10.21 21.65 0.22 -56.20 16 23 Si 0.97 45.10 29.55 68.60 2.03 47.13 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 25 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 27 C 0.16 7.99 5.98 86.47 0.52 8.51 16 28 C -0.13 -5.00 5.77 31.89 0.18 -4.82 16 29 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.09 1.16 8.06 -2.38 -0.02 1.14 16 31 H 0.08 1.97 5.94 -2.39 -0.01 1.96 16 32 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.43 2.38 9.06 -74.06 -0.67 1.70 16 34 H 0.17 3.56 6.46 -2.91 -0.02 3.54 16 35 H 0.41 10.59 6.59 -92.71 -0.61 9.98 16 36 H 0.07 1.88 7.40 -2.39 -0.02 1.86 16 37 H 0.07 2.01 7.37 -2.39 -0.02 1.99 16 38 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 41 H 0.05 1.92 8.10 -2.39 -0.02 1.91 16 42 H 0.24 14.24 8.31 -92.71 -0.77 13.47 16 43 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 44 H 0.06 3.68 5.99 -2.39 -0.01 3.66 16 45 H 0.07 2.63 6.84 -2.39 -0.02 2.61 16 46 H 0.07 2.71 7.62 -2.39 -0.02 2.70 16 Total: -1.00 -70.02 362.52 -1.13 -71.15 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: -0.25 Total: 24.18 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 5.53 Total: 11.11 kcal Atomic # 7 Polarization: -119.77 SS G_CDS: -7.20 Total: -126.97 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -1.24 Total: -26.59 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -70.02 -1.13 -71.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992178498.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.859 kcal (2) G-P(sol) polarization free energy of solvation -70.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds