Wall clock time and date at job start Tue Mar 31 2020 16:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38349 * 119.41259 * 2 1 4 4 C 1.38338 * 119.46383 * 180.02562 * 3 2 1 5 5 C 1.39993 * 118.34691 * 359.97438 * 4 3 2 6 6 C 1.47524 * 120.59682 * 180.02562 * 5 4 3 7 7 O 1.21587 * 119.99441 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99756 * 359.97438 * 6 5 4 9 9 C 1.46499 * 119.99308 * 179.97438 * 8 6 5 10 10 C 1.51219 * 111.46676 * 291.88958 * 9 8 6 11 11 C 1.55760 * 104.60970 * 275.99094 * 10 9 8 12 12 C 1.56279 * 105.90607 * 352.70257 * 11 10 9 13 13 C 1.50520 * 101.79082 * 335.78310 * 12 11 10 14 14 H 1.09008 * 108.14665 * 293.72130 * 13 12 11 15 15 N 1.42702 * 128.15158 * 161.29062 * 13 12 11 16 16 C 1.36943 * 127.10588 * 28.30377 * 15 13 12 17 17 H 1.08008 * 119.99295 * 352.77185 * 16 15 13 18 18 C 1.38806 * 120.00107 * 172.76296 * 16 15 13 19 19 N 1.31613 * 120.00552 * 5.72031 * 18 16 15 20 20 Si 1.86804 * 119.99725 * 185.71409 * 18 16 15 21 21 H 1.48500 * 109.46989 * 94.96283 * 20 18 16 22 22 H 1.48496 * 109.47362 * 214.96083 * 20 18 16 23 23 H 1.48498 * 109.47198 * 334.96547 * 20 18 16 24 24 C 1.49292 * 105.79845 * 208.29142 * 15 13 12 25 25 C 1.52138 * 111.08846 * 71.70123 * 9 8 6 26 26 C 1.40277 * 118.80214 * 0.27853 * 5 4 3 27 27 O 1.35430 * 119.79686 * 179.72746 * 26 5 4 28 28 N 1.31884 * 119.40309 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.46883 * 89.99862 * 1 2 3 30 30 H 1.08998 * 109.47274 * 210.00500 * 1 2 3 31 31 H 1.09004 * 109.46692 * 330.00368 * 1 2 3 32 32 H 1.08007 * 120.26889 * 359.97438 * 3 2 1 33 33 H 1.07996 * 120.82663 * 180.02562 * 4 3 2 34 34 H 0.96999 * 120.00236 * 0.02562 * 8 6 5 35 35 H 1.09004 * 110.40652 * 34.73739 * 10 9 8 36 36 H 1.08998 * 110.41463 * 157.06087 * 10 9 8 37 37 H 1.08994 * 110.15281 * 233.60136 * 11 10 9 38 38 H 1.08998 * 110.19080 * 111.81915 * 11 10 9 39 39 H 1.08994 * 110.97230 * 217.64941 * 12 11 10 40 40 H 1.08996 * 110.97603 * 93.91430 * 12 11 10 41 41 H 0.97000 * 120.00582 * 180.02562 * 19 18 16 42 42 H 1.09004 * 110.05491 * 127.91995 * 24 15 13 43 43 H 1.09000 * 110.05272 * 249.34640 * 24 15 13 44 44 H 1.08999 * 111.14802 * 316.06735 * 25 9 8 45 45 H 1.08999 * 111.18544 * 191.85652 * 25 9 8 46 46 H 0.96693 * 114.00300 * 89.99768 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5698 1.2064 -0.0005 5 6 4.2356 -0.0251 -0.0005 6 6 5.7097 -0.0817 -0.0005 7 8 6.2767 -1.1572 -0.0010 8 7 6.4279 1.0589 -0.0010 9 6 7.8918 1.0026 -0.0005 10 6 8.4241 0.4579 1.3059 11 6 8.4686 1.6909 2.2566 12 6 8.1278 2.9300 1.3673 13 6 8.5246 2.4448 -0.0012 14 1 9.6059 2.3072 -0.0123 15 7 8.1293 2.9649 -1.2699 16 6 7.7757 4.2558 -1.5597 17 1 7.6651 4.9771 -0.7634 18 6 7.5596 4.6372 -2.8767 19 7 7.5836 3.7358 -3.8354 20 14 7.2345 6.4301 -3.2885 21 1 8.5078 7.0871 -3.6785 22 1 6.2699 6.5123 -4.4146 23 1 6.6674 7.1160 -2.0998 24 6 8.1810 1.8114 -2.2161 25 6 8.4221 0.5352 -1.3477 26 6 3.4757 -1.2042 -0.0059 27 8 4.0990 -2.4065 -0.0116 28 7 2.1545 -1.1490 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 1.6412 2.1375 -0.0004 33 1 4.1224 2.1343 -0.0001 34 1 5.9755 1.9169 -0.0011 35 1 7.7520 -0.3031 1.7025 36 1 9.4237 0.0461 1.1670 37 1 9.4648 1.7988 2.6854 38 1 7.7278 1.5821 3.0488 39 1 8.7207 3.7960 1.6612 40 1 7.0626 3.1575 1.4067 41 1 7.4330 4.0024 -4.7558 42 1 7.2359 1.7252 -2.7525 43 1 9.0004 1.9439 -2.9225 44 1 7.8477 -0.3111 -1.7243 45 1 9.4833 0.2930 -1.2907 46 1 4.2802 -2.7598 0.8701 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992270798.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:16 Heat of formation + Delta-G solvation = 2.345024 kcal Electronic energy + Delta-G solvation = -29805.573621 eV Core-core repulsion = 25889.677626 eV Total energy + Delta-G solvation = -3915.895995 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.96372 -40.13488 -37.92863 -37.08571 -34.46208 -33.61722 -32.62474 -31.67999 -31.61173 -29.90076 -27.95570 -26.98315 -25.79124 -24.11943 -23.45229 -23.08791 -21.06435 -20.50329 -19.68773 -18.75546 -18.59524 -17.59034 -16.77934 -16.51748 -15.79238 -15.66021 -14.91828 -14.74067 -14.59833 -14.35123 -14.21293 -13.95679 -13.91458 -13.41792 -13.29609 -12.75006 -12.56973 -12.38379 -12.37058 -12.17082 -11.92825 -11.59016 -11.45734 -11.39464 -11.06304 -10.97232 -10.84527 -10.53375 -10.32936 -10.07460 -10.02603 -9.95772 -9.88771 -9.73917 -9.48435 -9.10514 -8.88233 -8.70674 -8.46625 -6.90796 -5.82147 -3.16461 0.57775 1.05192 3.02343 3.32965 3.38415 3.40857 3.41065 3.55695 3.85330 4.39420 4.42997 4.56251 4.61849 4.79113 4.91237 5.16650 5.19457 5.24196 5.31853 5.36529 5.41910 5.43640 5.56352 5.68069 5.75736 5.79312 5.85621 5.90357 5.92223 5.98234 6.11866 6.22051 6.27312 6.33920 6.34971 6.39845 6.46085 6.63327 6.79341 6.86422 7.15197 7.51535 7.52107 7.52355 7.72027 7.78481 7.99673 8.13634 8.63308 9.06656 9.73475 10.43417 11.30868 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010674 B = 0.004620 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.604711 B = 6058.876004 C = 7519.107653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.168 3.832 3 C -0.190 4.190 4 C -0.022 4.022 5 C -0.203 4.203 6 C 0.561 3.439 7 O -0.528 6.528 8 N -0.684 5.684 9 C 0.132 3.868 10 C -0.111 4.111 11 C -0.117 4.117 12 C -0.114 4.114 13 C 0.158 3.842 14 H 0.024 0.976 15 N -0.584 5.584 16 C -0.236 4.236 17 H 0.079 0.921 18 C -0.001 4.001 19 N -0.915 5.915 20 Si 0.907 3.093 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.281 1.281 24 C 0.180 3.820 25 C -0.140 4.140 26 C 0.370 3.630 27 O -0.458 6.458 28 N -0.512 5.512 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.400 0.600 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.254 0.746 42 H 0.057 0.943 43 H 0.040 0.960 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.850 -5.470 12.022 15.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.030 3.970 3 C -0.210 4.210 4 C -0.048 4.048 5 C -0.210 4.210 6 C 0.346 3.654 7 O -0.406 6.406 8 N -0.335 5.335 9 C 0.044 3.956 10 C -0.150 4.150 11 C -0.155 4.155 12 C -0.153 4.153 13 C 0.048 3.952 14 H 0.041 0.959 15 N -0.307 5.307 16 C -0.364 4.364 17 H 0.097 0.903 18 C -0.198 4.198 19 N -0.561 5.561 20 Si 0.738 3.262 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.206 1.206 24 C 0.056 3.944 25 C -0.179 4.179 26 C 0.190 3.810 27 O -0.265 6.265 28 N -0.233 5.233 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.237 0.763 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -8.897 -6.829 11.197 15.849 hybrid contribution 0.186 2.121 -0.047 2.129 sum -8.711 -4.709 11.150 14.912 Atomic orbital electron populations 1.20803 0.88328 1.03721 1.03555 1.21216 0.96939 0.87292 0.91593 1.21902 0.94564 0.99537 1.05033 1.21850 0.94583 0.97480 0.90890 1.21266 0.95638 0.94189 1.09864 1.17717 0.85513 0.84733 0.77429 1.90760 1.71589 1.28442 1.49844 1.45606 1.06655 1.08028 1.73246 1.21548 0.79113 1.00887 0.94022 1.21870 1.01212 0.97255 0.94640 1.22829 1.00898 0.94200 0.97550 1.21827 1.01099 0.97120 0.95205 1.20841 0.96313 0.90139 0.87931 0.95920 1.43670 1.78666 1.05910 1.02496 1.18998 1.40805 0.84496 0.92096 0.90303 1.24818 1.01720 0.97606 0.95675 1.69933 1.54962 1.31411 0.99769 0.86183 0.77614 0.84643 0.77780 1.21568 1.21800 1.20618 1.21977 1.00967 0.81320 0.90127 1.22799 0.99936 0.99826 0.95296 1.19113 0.86000 0.85142 0.90733 1.84738 1.76425 1.31830 1.33500 1.67106 1.09452 1.30407 1.16317 0.89880 0.90240 0.90223 0.83837 0.83644 0.76322 0.91267 0.91039 0.91888 0.92307 0.91678 0.91860 0.93593 0.92466 0.94210 0.91300 0.91550 0.73923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.16 36.01 0.37 -0.47 16 2 C 0.17 1.96 6.78 -82.53 -0.56 1.40 16 3 C -0.19 -2.11 9.71 -39.50 -0.38 -2.49 16 4 C -0.02 -0.29 9.64 -38.89 -0.37 -0.66 16 5 C -0.20 -3.13 5.90 -104.69 -0.62 -3.75 16 6 C 0.56 9.78 7.09 -12.47 -0.09 9.70 16 7 O -0.53 -10.29 13.35 -16.48 -0.22 -10.51 16 8 N -0.68 -11.79 4.35 -47.60 -0.21 -12.00 16 9 C 0.13 2.36 0.40 -130.70 -0.05 2.31 16 10 C -0.11 -1.70 6.04 -26.16 -0.16 -1.86 16 11 C -0.12 -1.58 6.94 -23.50 -0.16 -1.74 16 12 C -0.11 -1.81 6.46 -26.21 -0.17 -1.98 16 13 C 0.16 3.06 2.64 -68.72 -0.18 2.88 16 14 H 0.02 0.48 7.94 -51.92 -0.41 0.06 16 15 N -0.58 -13.75 3.12 -162.67 -0.51 -14.26 16 16 C -0.24 -6.07 10.28 -15.06 -0.15 -6.22 16 17 H 0.08 1.95 7.84 -52.48 -0.41 1.54 16 18 C 0.00 -0.02 5.49 -17.44 -0.10 -0.12 16 19 N -0.91 -25.91 10.61 55.49 0.59 -25.32 16 20 Si 0.91 21.08 29.56 -169.99 -5.02 16.06 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 C 0.18 4.27 5.29 -0.75 0.00 4.27 16 25 C -0.14 -2.78 6.19 -25.43 -0.16 -2.94 16 26 C 0.37 5.71 7.77 -16.61 -0.13 5.58 16 27 O -0.46 -6.96 11.66 -39.75 -0.46 -7.43 16 28 N -0.51 -7.35 10.28 -9.21 -0.09 -7.44 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 32 H 0.14 1.16 8.06 -52.48 -0.42 0.73 16 33 H 0.15 1.76 6.51 -52.49 -0.34 1.42 16 34 H 0.40 6.80 5.90 -40.82 -0.24 6.56 16 35 H 0.07 1.10 6.86 -51.93 -0.36 0.74 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 0.99 7.38 -51.93 -0.38 0.61 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.06 1.52 7.32 -51.93 -0.38 1.14 16 43 H 0.04 1.04 7.82 -51.93 -0.41 0.63 16 44 H 0.07 1.44 7.17 -51.93 -0.37 1.07 16 45 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.40 4.28 9.06 45.56 0.41 4.70 16 LS Contribution 366.25 15.07 5.52 5.52 Total: -1.00 -32.14 366.25 -9.16 -41.30 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -5.83 Total: 10.18 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -2.92 Total: 3.91 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -0.22 Total: -59.03 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.68 Total: -17.94 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.14 -9.16 -41.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992270798.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.646 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds