Wall clock time and date at job start Tue Mar 31 2020 16:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38349 * 119.41259 * 2 1 4 4 C 1.38338 * 119.46383 * 180.02562 * 3 2 1 5 5 C 1.39993 * 118.34691 * 359.97438 * 4 3 2 6 6 C 1.47524 * 120.59682 * 180.02562 * 5 4 3 7 7 O 1.21587 * 119.99441 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99756 * 359.97438 * 6 5 4 9 9 C 1.46499 * 119.99308 * 179.97438 * 8 6 5 10 10 C 1.51219 * 111.46676 * 291.88958 * 9 8 6 11 11 C 1.55760 * 104.60970 * 275.99094 * 10 9 8 12 12 C 1.56279 * 105.90607 * 352.70257 * 11 10 9 13 13 C 1.50520 * 101.79082 * 335.78310 * 12 11 10 14 14 H 1.09008 * 108.14665 * 293.72130 * 13 12 11 15 15 N 1.42702 * 128.15158 * 161.29062 * 13 12 11 16 16 C 1.36943 * 127.10588 * 28.30377 * 15 13 12 17 17 H 1.08008 * 119.99295 * 352.77185 * 16 15 13 18 18 C 1.38806 * 120.00107 * 172.76296 * 16 15 13 19 19 N 1.31613 * 120.00552 * 5.72031 * 18 16 15 20 20 Si 1.86804 * 119.99725 * 185.71409 * 18 16 15 21 21 H 1.48500 * 109.46989 * 94.96283 * 20 18 16 22 22 H 1.48496 * 109.47362 * 214.96083 * 20 18 16 23 23 H 1.48498 * 109.47198 * 334.96547 * 20 18 16 24 24 C 1.49292 * 105.79845 * 208.29142 * 15 13 12 25 25 C 1.52138 * 111.08846 * 71.70123 * 9 8 6 26 26 C 1.40277 * 118.80214 * 0.27853 * 5 4 3 27 27 O 1.35430 * 119.79686 * 179.72746 * 26 5 4 28 28 N 1.31884 * 119.40309 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.46883 * 89.99862 * 1 2 3 30 30 H 1.08998 * 109.47274 * 210.00500 * 1 2 3 31 31 H 1.09004 * 109.46692 * 330.00368 * 1 2 3 32 32 H 1.08007 * 120.26889 * 359.97438 * 3 2 1 33 33 H 1.07996 * 120.82663 * 180.02562 * 4 3 2 34 34 H 0.96999 * 120.00236 * 0.02562 * 8 6 5 35 35 H 1.09004 * 110.40652 * 34.73739 * 10 9 8 36 36 H 1.08998 * 110.41463 * 157.06087 * 10 9 8 37 37 H 1.08994 * 110.15281 * 233.60136 * 11 10 9 38 38 H 1.08998 * 110.19080 * 111.81915 * 11 10 9 39 39 H 1.08994 * 110.97230 * 217.64941 * 12 11 10 40 40 H 1.08996 * 110.97603 * 93.91430 * 12 11 10 41 41 H 0.97000 * 120.00582 * 180.02562 * 19 18 16 42 42 H 1.09004 * 110.05491 * 127.91995 * 24 15 13 43 43 H 1.09000 * 110.05272 * 249.34640 * 24 15 13 44 44 H 1.08999 * 111.14802 * 316.06735 * 25 9 8 45 45 H 1.08999 * 111.18544 * 191.85652 * 25 9 8 46 46 H 0.96693 * 114.00300 * 89.99768 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5698 1.2064 -0.0005 5 6 4.2356 -0.0251 -0.0005 6 6 5.7097 -0.0817 -0.0005 7 8 6.2767 -1.1572 -0.0010 8 7 6.4279 1.0589 -0.0010 9 6 7.8918 1.0026 -0.0005 10 6 8.4241 0.4579 1.3059 11 6 8.4686 1.6909 2.2566 12 6 8.1278 2.9300 1.3673 13 6 8.5246 2.4448 -0.0012 14 1 9.6059 2.3072 -0.0123 15 7 8.1293 2.9649 -1.2699 16 6 7.7757 4.2558 -1.5597 17 1 7.6651 4.9771 -0.7634 18 6 7.5596 4.6372 -2.8767 19 7 7.5836 3.7358 -3.8354 20 14 7.2345 6.4301 -3.2885 21 1 8.5078 7.0871 -3.6785 22 1 6.2699 6.5123 -4.4146 23 1 6.6674 7.1160 -2.0998 24 6 8.1810 1.8114 -2.2161 25 6 8.4221 0.5352 -1.3477 26 6 3.4757 -1.2042 -0.0059 27 8 4.0990 -2.4065 -0.0116 28 7 2.1545 -1.1490 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 1.6412 2.1375 -0.0004 33 1 4.1224 2.1343 -0.0001 34 1 5.9755 1.9169 -0.0011 35 1 7.7520 -0.3031 1.7025 36 1 9.4237 0.0461 1.1670 37 1 9.4648 1.7988 2.6854 38 1 7.7278 1.5821 3.0488 39 1 8.7207 3.7960 1.6612 40 1 7.0626 3.1575 1.4067 41 1 7.4330 4.0024 -4.7558 42 1 7.2359 1.7252 -2.7525 43 1 9.0004 1.9439 -2.9225 44 1 7.8477 -0.3111 -1.7243 45 1 9.4833 0.2930 -1.2907 46 1 4.2802 -2.7598 0.8701 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992270798.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:16 Heat of formation + Delta-G solvation = -20.396977 kcal Electronic energy + Delta-G solvation = -29806.559788 eV Core-core repulsion = 25889.677626 eV Total energy + Delta-G solvation = -3916.882162 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.22192 -41.40188 -39.28844 -38.19994 -36.15254 -34.83700 -33.98824 -33.29981 -32.60770 -31.52999 -28.92638 -28.53532 -27.26157 -25.95424 -24.57647 -24.07395 -22.44000 -21.98725 -21.25796 -20.14577 -19.71885 -18.84807 -18.33084 -17.88790 -17.25874 -16.85449 -16.36881 -16.17010 -15.89863 -15.71312 -15.61642 -15.41043 -14.89993 -14.83493 -14.35029 -14.11738 -14.02889 -13.60960 -13.48861 -13.11820 -13.07252 -13.04149 -12.94643 -12.85140 -12.64817 -12.61224 -12.17026 -12.10798 -12.02177 -11.81710 -11.56701 -11.37105 -11.17062 -11.00693 -10.88362 -10.70979 -10.39795 -10.02261 -9.76701 -8.86374 -7.85322 -5.20656 -0.47395 0.05026 1.47872 1.50153 1.58155 1.84114 2.15907 2.48073 2.50586 2.73300 3.07892 3.36652 3.49252 3.65524 3.68964 3.78781 3.89307 3.93697 4.10138 4.24152 4.31188 4.39483 4.41859 4.43183 4.56476 4.62061 4.67266 4.79723 4.80467 4.91549 4.94358 4.97555 5.04655 5.06520 5.11895 5.12328 5.23234 5.28850 5.47862 5.49595 5.57173 5.58251 5.66206 5.77536 6.17411 6.51936 6.62705 6.81008 7.03543 7.27257 7.76542 8.49975 9.27824 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010674 B = 0.004620 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.604711 B = 6058.876004 C = 7519.107653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.166 3.834 3 C -0.181 4.181 4 C -0.026 4.026 5 C -0.227 4.227 6 C 0.560 3.440 7 O -0.555 6.555 8 N -0.683 5.683 9 C 0.139 3.861 10 C -0.107 4.107 11 C -0.102 4.102 12 C -0.109 4.109 13 C 0.148 3.852 14 H 0.018 0.982 15 N -0.596 5.596 16 C -0.232 4.232 17 H 0.093 0.907 18 C -0.060 4.060 19 N -0.951 5.951 20 Si 0.972 3.028 21 H -0.294 1.294 22 H -0.301 1.301 23 H -0.260 1.260 24 C 0.194 3.806 25 C -0.130 4.130 26 C 0.357 3.643 27 O -0.476 6.476 28 N -0.531 5.531 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.181 0.819 33 H 0.152 0.848 34 H 0.401 0.599 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.245 0.755 42 H 0.020 0.980 43 H 0.004 0.996 44 H 0.054 0.946 45 H 0.080 0.920 46 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.315 -4.080 14.602 18.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.028 3.972 3 C -0.200 4.200 4 C -0.051 4.051 5 C -0.234 4.234 6 C 0.347 3.653 7 O -0.435 6.435 8 N -0.334 5.334 9 C 0.051 3.949 10 C -0.146 4.146 11 C -0.140 4.140 12 C -0.147 4.147 13 C 0.038 3.962 14 H 0.035 0.965 15 N -0.319 5.319 16 C -0.361 4.361 17 H 0.110 0.890 18 C -0.254 4.254 19 N -0.600 5.600 20 Si 0.801 3.199 21 H -0.222 1.222 22 H -0.228 1.228 23 H -0.184 1.184 24 C 0.069 3.931 25 C -0.169 4.169 26 C 0.177 3.823 27 O -0.286 6.286 28 N -0.252 5.252 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.128 0.872 32 H 0.199 0.801 33 H 0.170 0.830 34 H 0.238 0.762 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.038 0.962 43 H 0.022 0.978 44 H 0.073 0.927 45 H 0.099 0.901 46 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -10.361 -5.436 13.841 18.124 hybrid contribution 0.588 1.659 -0.858 1.958 sum -9.773 -3.777 12.983 16.683 Atomic orbital electron populations 1.20955 0.85301 1.05345 1.04578 1.21992 0.98854 0.86788 0.89531 1.22305 0.93711 1.00911 1.03095 1.22022 0.95729 0.96747 0.90637 1.21138 0.94338 0.95389 1.12509 1.18023 0.86494 0.84194 0.76546 1.90730 1.72388 1.29230 1.51149 1.45575 1.06359 1.08153 1.73314 1.21517 0.79621 0.99699 0.94032 1.21872 1.01340 0.98118 0.93234 1.22765 1.02843 0.91505 0.96897 1.21848 1.01432 0.98550 0.92895 1.21061 0.95949 0.91136 0.88010 0.96491 1.43777 1.78535 1.05347 1.04230 1.19422 1.38829 0.85521 0.92309 0.88975 1.25596 1.02738 1.01210 0.95824 1.70155 1.57098 1.33165 0.99589 0.85158 0.76790 0.80300 0.77686 1.22193 1.22811 1.18403 1.21612 0.97552 0.83583 0.90344 1.22652 1.00781 0.97250 0.96211 1.19250 0.86605 0.85054 0.91347 1.84680 1.76705 1.32153 1.35034 1.67197 1.08848 1.31905 1.17228 0.88905 0.90121 0.87156 0.80117 0.83016 0.76198 0.91647 0.90170 0.89737 0.90328 0.90802 0.91572 0.94608 0.96194 0.97779 0.92691 0.90144 0.72314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.30 10.16 71.24 0.72 -0.58 16 2 C 0.17 3.52 6.78 42.58 0.29 3.81 16 3 C -0.18 -3.52 9.71 22.32 0.22 -3.31 16 4 C -0.03 -0.64 9.64 22.72 0.22 -0.42 16 5 C -0.23 -7.02 5.90 -19.91 -0.12 -7.14 16 6 C 0.56 19.82 7.09 86.69 0.62 20.43 16 7 O -0.55 -22.09 13.35 16.83 0.22 -21.86 16 8 N -0.68 -23.52 4.35 -422.79 -1.84 -25.35 16 9 C 0.14 4.92 0.40 4.33 0.00 4.92 16 10 C -0.11 -3.08 6.04 30.97 0.19 -2.89 16 11 C -0.10 -2.41 6.94 32.69 0.23 -2.18 16 12 C -0.11 -3.16 6.46 30.93 0.20 -2.96 16 13 C 0.15 5.57 2.64 46.48 0.12 5.69 16 14 H 0.02 0.70 7.94 -2.38 -0.02 0.68 16 15 N -0.60 -28.38 3.12 -668.56 -2.09 -30.47 16 16 C -0.23 -11.91 10.28 84.03 0.86 -11.05 16 17 H 0.09 4.40 7.84 -2.91 -0.02 4.38 16 18 C -0.06 -3.26 5.49 84.86 0.47 -2.80 16 19 N -0.95 -56.10 10.61 21.65 0.23 -55.87 16 20 Si 0.97 43.59 29.56 68.60 2.03 45.62 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 22 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 23 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 24 C 0.19 9.66 5.29 86.96 0.46 10.12 16 25 C -0.13 -5.33 6.19 31.44 0.19 -5.14 16 26 C 0.36 11.10 7.77 85.13 0.66 11.76 16 27 O -0.48 -14.90 11.66 -66.43 -0.77 -15.68 16 28 N -0.53 -14.82 10.28 -296.06 -3.04 -17.86 16 29 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.11 0.72 8.07 -2.38 -0.02 0.70 16 32 H 0.18 2.12 8.06 -2.91 -0.02 2.09 16 33 H 0.15 3.50 6.51 -2.91 -0.02 3.48 16 34 H 0.40 13.51 5.90 -92.71 -0.55 12.96 16 35 H 0.06 1.97 6.86 -2.39 -0.02 1.96 16 36 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.07 1.89 7.38 -2.39 -0.02 1.87 16 41 H 0.24 14.24 8.31 -92.71 -0.77 13.47 16 42 H 0.02 1.12 7.32 -2.38 -0.02 1.10 16 43 H 0.00 0.22 7.82 -2.39 -0.02 0.20 16 44 H 0.05 2.40 7.17 -2.39 -0.02 2.38 16 45 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 46 H 0.42 9.25 9.06 -74.06 -0.67 8.58 16 Total: -1.00 -72.53 366.25 -0.12 -72.65 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -0.20 Total: 30.53 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 5.33 Total: 18.29 kcal Atomic # 7 Polarization: -122.81 SS G_CDS: -6.74 Total: -129.55 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -0.55 Total: -37.54 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -72.53 -0.12 -72.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992270798.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.255 kcal (2) G-P(sol) polarization free energy of solvation -72.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds