Wall clock time and date at job start Tue Mar 31 2020 16:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38355 * 119.40733 * 2 1 4 4 C 1.38335 * 119.45558 * 179.76098 * 3 2 1 5 5 C 1.39985 * 118.35107 * 0.47370 * 4 3 2 6 6 C 1.47524 * 120.59557 * 179.75349 * 5 4 3 7 7 O 1.21594 * 119.99897 * 179.72239 * 6 5 4 8 8 N 1.34775 * 120.00377 * 359.73076 * 6 5 4 9 9 C 1.46492 * 120.00366 * 179.97438 * 8 6 5 10 10 C 1.51225 * 111.06986 * 68.33628 * 9 8 6 11 11 C 1.55692 * 104.60923 * 83.87448 * 10 9 8 12 12 C 1.55028 * 105.77240 * 7.12857 * 11 10 9 13 13 C 1.50525 * 102.34312 * 24.51586 * 12 11 10 14 14 H 1.08994 * 108.14212 * 66.53614 * 13 12 11 15 15 N 1.42709 * 128.14823 * 198.97512 * 13 12 11 16 16 C 1.36936 * 127.10265 * 331.03319 * 15 13 12 17 17 H 1.08003 * 119.99565 * 7.41263 * 16 15 13 18 18 C 1.38810 * 120.00003 * 187.40478 * 16 15 13 19 19 N 1.31614 * 119.99909 * 7.13841 * 18 16 15 20 20 Si 1.86803 * 119.99730 * 187.40707 * 18 16 15 21 21 H 1.48494 * 109.47261 * 264.74343 * 20 18 16 22 22 H 1.48501 * 109.47273 * 24.74724 * 20 18 16 23 23 H 1.48505 * 109.46508 * 144.74392 * 20 18 16 24 24 C 1.49296 * 105.79299 * 151.30387 * 15 13 12 25 25 C 1.52129 * 111.08478 * 288.29997 * 9 8 6 26 26 C 1.40278 * 118.80413 * 359.48917 * 5 4 3 27 27 O 1.35426 * 119.79871 * 180.27234 * 26 5 4 28 28 N 1.31880 * 119.40785 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47382 * 270.02347 * 1 2 3 30 30 H 1.09001 * 109.46902 * 30.03058 * 1 2 3 31 31 H 1.09007 * 109.47048 * 150.02156 * 1 2 3 32 32 H 1.08005 * 120.27247 * 359.97438 * 3 2 1 33 33 H 1.08009 * 120.82133 * 180.23403 * 4 3 2 34 34 H 0.97008 * 119.99577 * 359.97438 * 8 6 5 35 35 H 1.08998 * 110.41459 * 202.66288 * 10 9 8 36 36 H 1.09005 * 110.40965 * 324.97171 * 10 9 8 37 37 H 1.08998 * 110.15802 * 126.37048 * 11 10 9 38 38 H 1.09001 * 110.15692 * 248.06785 * 11 10 9 39 39 H 1.09004 * 110.45332 * 266.31167 * 12 11 10 40 40 H 1.09001 * 110.93291 * 142.93659 * 12 11 10 41 41 H 0.97000 * 119.99934 * 180.26941 * 19 18 16 42 42 H 1.09003 * 110.04977 * 110.33465 * 24 15 13 43 43 H 1.09000 * 110.04741 * 231.81021 * 24 15 13 44 44 H 1.09001 * 111.15171 * 43.92896 * 25 9 8 45 45 H 1.09008 * 111.15142 * 168.10861 * 25 9 8 46 46 H 0.96705 * 113.99981 * 89.99824 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 0.0050 5 6 4.2355 -0.0249 -0.0002 6 6 5.7097 -0.0814 -0.0007 7 8 6.2769 -1.1570 -0.0002 8 7 6.4278 1.0591 -0.0015 9 6 7.8917 1.0030 -0.0014 10 6 8.4151 0.4606 -1.3125 11 6 8.4536 1.6949 -2.2607 12 6 8.1174 2.9197 -1.3718 13 6 8.5245 2.4451 -0.0026 14 1 9.6071 2.3188 0.0048 15 7 8.1286 2.9672 1.2652 16 6 7.7746 4.2584 1.5528 17 1 7.6614 4.9776 0.7552 18 6 7.5613 4.6427 2.8695 19 7 7.8342 3.8090 3.8507 20 14 6.8800 6.3403 3.2483 21 1 8.0009 7.2706 3.5363 22 1 6.1119 6.8377 2.0787 23 1 5.9853 6.2618 4.4310 24 6 8.1863 1.8164 2.2145 25 6 8.4214 0.5377 1.3466 26 6 3.4757 -1.2041 0.0007 27 8 4.0991 -2.4064 0.0012 28 7 2.1546 -1.1489 0.0005 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6411 2.1376 -0.0004 33 1 4.1223 2.1345 0.0089 34 1 5.9753 1.9171 -0.0022 35 1 9.4164 0.0504 -1.1816 36 1 7.7414 -0.3014 -1.7046 37 1 9.4471 1.8036 -2.6956 38 1 7.7087 1.5863 -3.0490 39 1 7.0495 3.1353 -1.4084 40 1 8.7002 3.7905 -1.6721 41 1 7.6815 4.0761 4.7706 42 1 9.0097 1.9515 2.9159 43 1 7.2440 1.7307 2.7556 44 1 7.8470 -0.3082 1.7243 45 1 9.4827 0.2950 1.2897 46 1 4.2804 -2.7550 0.8848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992270805.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:24 Heat of formation + Delta-G solvation = 1.753340 kcal Electronic energy + Delta-G solvation = -29815.149088 eV Core-core repulsion = 25899.227436 eV Total energy + Delta-G solvation = -3915.921652 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.98453 -40.16432 -37.94610 -37.08796 -34.50478 -33.63465 -32.65487 -31.69252 -31.63048 -29.90211 -27.96950 -26.97463 -25.83494 -24.13125 -23.46344 -23.10192 -21.08238 -20.51393 -19.67569 -18.76650 -18.59656 -17.60353 -16.79208 -16.52237 -15.83579 -15.65193 -14.87270 -14.81661 -14.61623 -14.44007 -14.13901 -13.98140 -13.90193 -13.45290 -13.31069 -12.80254 -12.56447 -12.39937 -12.38846 -12.17797 -11.95148 -11.59814 -11.47274 -11.42967 -11.06771 -10.94167 -10.83970 -10.54397 -10.33188 -10.09461 -10.05253 -9.97456 -9.90576 -9.75375 -9.48602 -9.11762 -8.89506 -8.71473 -8.48753 -6.92041 -5.83922 -3.17755 0.56204 1.03668 3.01097 3.31399 3.36501 3.37323 3.39356 3.58875 3.82481 4.38389 4.41730 4.55027 4.60735 4.77522 4.89783 5.16035 5.21053 5.24299 5.31425 5.34097 5.41003 5.42492 5.56405 5.69945 5.74999 5.78266 5.84139 5.88837 5.92323 5.97523 6.12846 6.20553 6.28023 6.33413 6.34283 6.41746 6.46894 6.60649 6.77415 6.86352 7.13224 7.42838 7.50954 7.53928 7.68313 7.77389 7.98001 8.11399 8.61703 9.04839 9.72149 10.42055 11.29732 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010464 B = 0.004709 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.309157 B = 5944.741163 C = 7437.879862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.168 3.832 3 C -0.191 4.191 4 C -0.023 4.023 5 C -0.203 4.203 6 C 0.560 3.440 7 O -0.528 6.528 8 N -0.685 5.685 9 C 0.133 3.867 10 C -0.112 4.112 11 C -0.117 4.117 12 C -0.114 4.114 13 C 0.158 3.842 14 H 0.024 0.976 15 N -0.583 5.583 16 C -0.235 4.235 17 H 0.079 0.921 18 C -0.002 4.002 19 N -0.915 5.915 20 Si 0.907 3.093 21 H -0.289 1.289 22 H -0.281 1.281 23 H -0.291 1.291 24 C 0.181 3.819 25 C -0.137 4.137 26 C 0.371 3.629 27 O -0.460 6.460 28 N -0.512 5.512 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.400 0.600 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.253 0.747 42 H 0.049 0.951 43 H 0.045 0.955 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.355 -5.672 -8.637 13.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.030 3.970 3 C -0.211 4.211 4 C -0.049 4.049 5 C -0.210 4.210 6 C 0.346 3.654 7 O -0.406 6.406 8 N -0.336 5.336 9 C 0.045 3.955 10 C -0.151 4.151 11 C -0.155 4.155 12 C -0.153 4.153 13 C 0.048 3.952 14 H 0.042 0.958 15 N -0.307 5.307 16 C -0.363 4.363 17 H 0.097 0.903 18 C -0.199 4.199 19 N -0.561 5.561 20 Si 0.737 3.263 21 H -0.216 1.216 22 H -0.206 1.206 23 H -0.217 1.217 24 C 0.057 3.943 25 C -0.176 4.176 26 C 0.191 3.809 27 O -0.267 6.267 28 N -0.233 5.233 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.237 0.763 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -9.396 -7.037 -9.005 14.795 hybrid contribution 0.003 2.090 0.899 2.275 sum -9.393 -4.947 -8.106 13.357 Atomic orbital electron populations 1.20806 0.88322 1.03798 1.03502 1.21220 0.96946 0.87280 0.91564 1.21905 0.94561 0.99545 1.05062 1.21852 0.94587 0.97476 0.90940 1.21261 0.95633 0.94192 1.09906 1.17716 0.85515 0.84731 0.77448 1.90764 1.71566 1.28451 1.49816 1.45631 1.06696 1.08027 1.73278 1.21529 0.79079 1.00826 0.94036 1.21874 1.01287 0.97365 0.94559 1.22604 1.00979 0.94278 0.97624 1.21617 1.01115 0.97298 0.95244 1.20826 0.96276 0.90157 0.87986 0.95847 1.43647 1.78871 1.05817 1.02356 1.18994 1.40298 0.84969 0.92064 0.90335 1.24799 1.01587 0.97950 0.95557 1.69934 1.52482 1.35094 0.98590 0.86196 0.78624 0.83823 0.77650 1.21585 1.20607 1.21690 1.21946 1.00691 0.81435 0.90235 1.22785 1.00049 0.99627 0.95187 1.19104 0.85992 0.85150 0.90692 1.84694 1.76415 1.31900 1.33735 1.67099 1.09457 1.30415 1.16305 0.89886 0.90210 0.90221 0.83837 0.83641 0.76338 0.91079 0.91115 0.91875 0.92270 0.91928 0.91707 0.93633 0.93293 0.93646 0.91408 0.91443 0.73634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.16 36.01 0.37 -0.46 16 2 C 0.17 1.95 6.78 -82.53 -0.56 1.39 16 3 C -0.19 -2.09 9.71 -39.50 -0.38 -2.47 16 4 C -0.02 -0.29 9.64 -38.89 -0.37 -0.67 16 5 C -0.20 -3.10 5.90 -104.69 -0.62 -3.72 16 6 C 0.56 9.69 7.08 -12.48 -0.09 9.60 16 7 O -0.53 -10.21 13.34 -16.49 -0.22 -10.43 16 8 N -0.69 -11.70 4.32 -47.61 -0.21 -11.91 16 9 C 0.13 2.37 0.41 -130.71 -0.05 2.31 16 10 C -0.11 -1.77 6.05 -26.19 -0.16 -1.92 16 11 C -0.12 -1.63 6.90 -24.22 -0.17 -1.80 16 12 C -0.11 -1.84 6.37 -26.90 -0.17 -2.01 16 13 C 0.16 3.05 2.65 -68.71 -0.18 2.87 16 14 H 0.02 0.49 7.99 -51.93 -0.41 0.08 16 15 N -0.58 -13.61 3.12 -162.62 -0.51 -14.12 16 16 C -0.24 -6.01 10.27 -15.06 -0.15 -6.17 16 17 H 0.08 1.94 7.84 -52.48 -0.41 1.52 16 18 C 0.00 -0.04 5.46 -17.43 -0.10 -0.14 16 19 N -0.91 -25.68 10.75 55.49 0.60 -25.08 16 20 Si 0.91 20.87 29.56 -169.99 -5.02 15.84 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.18 4.20 5.29 -0.71 0.00 4.20 16 25 C -0.14 -2.67 6.22 -25.39 -0.16 -2.83 16 26 C 0.37 5.67 7.77 -16.61 -0.13 5.54 16 27 O -0.46 -6.93 11.66 -39.74 -0.46 -7.39 16 28 N -0.51 -7.29 10.28 -9.21 -0.09 -7.38 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 31 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 33 H 0.15 1.73 6.52 -52.48 -0.34 1.39 16 34 H 0.40 6.71 5.86 -40.82 -0.24 6.47 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.19 6.84 -51.93 -0.35 0.83 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.99 7.31 -51.93 -0.38 0.61 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.05 1.27 7.57 -51.93 -0.39 0.87 16 43 H 0.05 1.16 7.68 -51.93 -0.40 0.76 16 44 H 0.07 1.34 7.17 -51.93 -0.37 0.97 16 45 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 46 H 0.40 4.53 9.06 45.56 0.41 4.94 16 LS Contribution 366.28 15.07 5.52 5.52 Total: -1.00 -31.71 366.28 -9.16 -40.87 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -5.83 Total: 10.35 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -2.93 Total: 3.73 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.21 Total: -58.49 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.68 Total: -17.83 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.71 -9.16 -40.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992270805.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.627 kcal (2) G-P(sol) polarization free energy of solvation -31.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds