Wall clock time and date at job start Tue Mar 31 2020 16:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38355 * 119.40733 * 2 1 4 4 C 1.38335 * 119.45558 * 179.76098 * 3 2 1 5 5 C 1.39985 * 118.35107 * 0.47370 * 4 3 2 6 6 C 1.47524 * 120.59557 * 179.75349 * 5 4 3 7 7 O 1.21594 * 119.99897 * 179.72239 * 6 5 4 8 8 N 1.34775 * 120.00377 * 359.73076 * 6 5 4 9 9 C 1.46492 * 120.00366 * 179.97438 * 8 6 5 10 10 C 1.51225 * 111.06986 * 68.33628 * 9 8 6 11 11 C 1.55692 * 104.60923 * 83.87448 * 10 9 8 12 12 C 1.55028 * 105.77240 * 7.12857 * 11 10 9 13 13 C 1.50525 * 102.34312 * 24.51586 * 12 11 10 14 14 H 1.08994 * 108.14212 * 66.53614 * 13 12 11 15 15 N 1.42709 * 128.14823 * 198.97512 * 13 12 11 16 16 C 1.36936 * 127.10265 * 331.03319 * 15 13 12 17 17 H 1.08003 * 119.99565 * 7.41263 * 16 15 13 18 18 C 1.38810 * 120.00003 * 187.40478 * 16 15 13 19 19 N 1.31614 * 119.99909 * 7.13841 * 18 16 15 20 20 Si 1.86803 * 119.99730 * 187.40707 * 18 16 15 21 21 H 1.48494 * 109.47261 * 264.74343 * 20 18 16 22 22 H 1.48501 * 109.47273 * 24.74724 * 20 18 16 23 23 H 1.48505 * 109.46508 * 144.74392 * 20 18 16 24 24 C 1.49296 * 105.79299 * 151.30387 * 15 13 12 25 25 C 1.52129 * 111.08478 * 288.29997 * 9 8 6 26 26 C 1.40278 * 118.80413 * 359.48917 * 5 4 3 27 27 O 1.35426 * 119.79871 * 180.27234 * 26 5 4 28 28 N 1.31880 * 119.40785 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47382 * 270.02347 * 1 2 3 30 30 H 1.09001 * 109.46902 * 30.03058 * 1 2 3 31 31 H 1.09007 * 109.47048 * 150.02156 * 1 2 3 32 32 H 1.08005 * 120.27247 * 359.97438 * 3 2 1 33 33 H 1.08009 * 120.82133 * 180.23403 * 4 3 2 34 34 H 0.97008 * 119.99577 * 359.97438 * 8 6 5 35 35 H 1.08998 * 110.41459 * 202.66288 * 10 9 8 36 36 H 1.09005 * 110.40965 * 324.97171 * 10 9 8 37 37 H 1.08998 * 110.15802 * 126.37048 * 11 10 9 38 38 H 1.09001 * 110.15692 * 248.06785 * 11 10 9 39 39 H 1.09004 * 110.45332 * 266.31167 * 12 11 10 40 40 H 1.09001 * 110.93291 * 142.93659 * 12 11 10 41 41 H 0.97000 * 119.99934 * 180.26941 * 19 18 16 42 42 H 1.09003 * 110.04977 * 110.33465 * 24 15 13 43 43 H 1.09000 * 110.04741 * 231.81021 * 24 15 13 44 44 H 1.09001 * 111.15171 * 43.92896 * 25 9 8 45 45 H 1.09008 * 111.15142 * 168.10861 * 25 9 8 46 46 H 0.96705 * 113.99981 * 89.99824 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 0.0050 5 6 4.2355 -0.0249 -0.0002 6 6 5.7097 -0.0814 -0.0007 7 8 6.2769 -1.1570 -0.0002 8 7 6.4278 1.0591 -0.0015 9 6 7.8917 1.0030 -0.0014 10 6 8.4151 0.4606 -1.3125 11 6 8.4536 1.6949 -2.2607 12 6 8.1174 2.9197 -1.3718 13 6 8.5245 2.4451 -0.0026 14 1 9.6071 2.3188 0.0048 15 7 8.1286 2.9672 1.2652 16 6 7.7746 4.2584 1.5528 17 1 7.6614 4.9776 0.7552 18 6 7.5613 4.6427 2.8695 19 7 7.8342 3.8090 3.8507 20 14 6.8800 6.3403 3.2483 21 1 8.0009 7.2706 3.5363 22 1 6.1119 6.8377 2.0787 23 1 5.9853 6.2618 4.4310 24 6 8.1863 1.8164 2.2145 25 6 8.4214 0.5377 1.3466 26 6 3.4757 -1.2041 0.0007 27 8 4.0991 -2.4064 0.0012 28 7 2.1546 -1.1489 0.0005 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6411 2.1376 -0.0004 33 1 4.1223 2.1345 0.0089 34 1 5.9753 1.9171 -0.0022 35 1 9.4164 0.0504 -1.1816 36 1 7.7414 -0.3014 -1.7046 37 1 9.4471 1.8036 -2.6956 38 1 7.7087 1.5863 -3.0490 39 1 7.0495 3.1353 -1.4084 40 1 8.7002 3.7905 -1.6721 41 1 7.6815 4.0761 4.7706 42 1 9.0097 1.9515 2.9159 43 1 7.2440 1.7307 2.7556 44 1 7.8470 -0.3082 1.7243 45 1 9.4827 0.2950 1.2897 46 1 4.2804 -2.7550 0.8848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992270805.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:23 Heat of formation + Delta-G solvation = -20.423091 kcal Electronic energy + Delta-G solvation = -29816.110731 eV Core-core repulsion = 25899.227436 eV Total energy + Delta-G solvation = -3916.883294 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.24009 -41.41660 -39.29502 -38.19132 -36.18599 -34.85014 -34.01556 -33.30014 -32.60856 -31.51889 -28.93038 -28.53340 -27.30437 -25.94926 -24.57669 -24.07526 -22.44598 -22.00024 -21.23882 -20.15407 -19.70836 -18.84897 -18.32779 -17.88624 -17.27421 -16.86662 -16.35776 -16.14267 -15.93645 -15.72648 -15.70710 -15.31270 -14.97198 -14.78906 -14.36972 -14.12704 -14.02928 -13.61860 -13.53350 -13.13496 -13.06773 -13.05292 -12.96189 -12.78424 -12.65501 -12.61856 -12.17657 -12.12273 -12.03812 -11.82207 -11.56520 -11.37808 -11.17264 -11.01231 -10.89596 -10.68612 -10.39455 -10.02611 -9.77082 -8.86072 -7.85264 -5.20176 -0.47831 0.04657 1.49012 1.49879 1.58810 1.84888 2.13766 2.47205 2.51291 2.74491 3.07071 3.35800 3.48891 3.65175 3.68936 3.78641 3.89567 3.93468 4.08983 4.23263 4.31204 4.38446 4.41811 4.42195 4.55529 4.61369 4.66934 4.79822 4.80397 4.91283 4.94395 4.96317 5.04171 5.06508 5.11023 5.12255 5.22091 5.28739 5.43621 5.48849 5.54987 5.60606 5.67319 5.76290 6.17530 6.49477 6.61760 6.80223 7.03957 7.26935 7.77041 8.50172 9.28388 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010464 B = 0.004709 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.309157 B = 5944.741163 C = 7437.879862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.166 3.834 3 C -0.181 4.181 4 C -0.026 4.026 5 C -0.227 4.227 6 C 0.560 3.440 7 O -0.555 6.555 8 N -0.684 5.684 9 C 0.140 3.860 10 C -0.108 4.108 11 C -0.104 4.104 12 C -0.109 4.109 13 C 0.148 3.852 14 H 0.017 0.983 15 N -0.595 5.595 16 C -0.233 4.233 17 H 0.091 0.909 18 C -0.060 4.060 19 N -0.951 5.951 20 Si 0.971 3.029 21 H -0.293 1.293 22 H -0.260 1.260 23 H -0.300 1.300 24 C 0.195 3.805 25 C -0.127 4.127 26 C 0.357 3.643 27 O -0.476 6.476 28 N -0.531 5.531 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.182 0.818 33 H 0.153 0.847 34 H 0.402 0.598 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.245 0.755 42 H 0.013 0.987 43 H 0.012 0.988 44 H 0.060 0.940 45 H 0.079 0.921 46 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.065 -4.323 -10.858 16.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.028 3.972 3 C -0.200 4.200 4 C -0.052 4.052 5 C -0.233 4.233 6 C 0.347 3.653 7 O -0.435 6.435 8 N -0.335 5.335 9 C 0.053 3.947 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.147 4.147 13 C 0.039 3.961 14 H 0.034 0.966 15 N -0.318 5.318 16 C -0.362 4.362 17 H 0.108 0.892 18 C -0.253 4.253 19 N -0.599 5.599 20 Si 0.800 3.200 21 H -0.221 1.221 22 H -0.185 1.185 23 H -0.227 1.227 24 C 0.070 3.930 25 C -0.166 4.166 26 C 0.177 3.823 27 O -0.285 6.285 28 N -0.252 5.252 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.096 0.904 32 H 0.199 0.801 33 H 0.171 0.829 34 H 0.238 0.762 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.054 0.946 42 H 0.031 0.969 43 H 0.030 0.970 44 H 0.078 0.922 45 H 0.098 0.902 46 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -11.108 -5.684 -11.272 16.816 hybrid contribution 0.490 1.650 1.606 2.354 sum -10.619 -4.034 -9.667 14.915 Atomic orbital electron populations 1.20957 0.85319 1.05190 1.04727 1.21993 0.98849 0.86786 0.89526 1.22310 0.93720 1.00904 1.03081 1.22030 0.95718 0.96754 0.90648 1.21130 0.94316 0.95389 1.12511 1.18021 0.86495 0.84182 0.76555 1.90735 1.72366 1.29256 1.51124 1.45593 1.06350 1.08182 1.73354 1.21477 0.79637 0.99554 0.94061 1.21865 1.01367 0.98050 0.93403 1.22545 1.02821 0.91799 0.96993 1.21625 1.01443 0.98578 0.93066 1.21017 0.95843 0.91209 0.88075 0.96609 1.43762 1.78752 1.05291 1.04016 1.19402 1.38520 0.85977 0.92252 0.89172 1.25575 1.02763 1.01368 0.95625 1.70143 1.54411 1.36940 0.98456 0.85180 0.77633 0.79711 0.77517 1.22089 1.18470 1.22690 1.21600 0.97462 0.83544 0.90379 1.22642 1.00872 0.97296 0.95808 1.19242 0.86596 0.85061 0.91376 1.84639 1.76700 1.32244 1.34936 1.67186 1.08866 1.31937 1.17203 0.88516 0.87305 0.90373 0.80097 0.82923 0.76153 0.90155 0.92008 0.89747 0.90591 0.91602 0.90885 0.94573 0.96904 0.96957 0.92158 0.90214 0.72425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.16 71.24 0.72 -0.55 16 2 C 0.17 3.47 6.78 42.58 0.29 3.76 16 3 C -0.18 -3.44 9.71 22.32 0.22 -3.22 16 4 C -0.03 -0.63 9.64 22.72 0.22 -0.41 16 5 C -0.23 -6.91 5.90 -19.91 -0.12 -7.03 16 6 C 0.56 19.58 7.08 86.69 0.61 20.20 16 7 O -0.55 -21.90 13.34 16.80 0.22 -21.67 16 8 N -0.68 -23.25 4.32 -422.81 -1.83 -25.08 16 9 C 0.14 4.94 0.41 4.33 0.00 4.94 16 10 C -0.11 -3.22 6.05 30.94 0.19 -3.04 16 11 C -0.10 -2.57 6.90 32.22 0.22 -2.34 16 12 C -0.11 -3.23 6.37 30.49 0.19 -3.03 16 13 C 0.15 5.59 2.65 46.47 0.12 5.71 16 14 H 0.02 0.66 7.99 -2.39 -0.02 0.64 16 15 N -0.60 -28.05 3.12 -668.40 -2.08 -30.13 16 16 C -0.23 -11.86 10.27 84.03 0.86 -11.00 16 17 H 0.09 4.31 7.84 -2.91 -0.02 4.28 16 18 C -0.06 -3.20 5.46 84.86 0.46 -2.74 16 19 N -0.95 -55.34 10.75 21.65 0.23 -55.10 16 20 Si 0.97 43.00 29.56 68.60 2.03 45.03 16 21 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 22 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 23 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 24 C 0.19 9.46 5.29 86.99 0.46 9.92 16 25 C -0.13 -5.06 6.22 31.46 0.20 -4.86 16 26 C 0.36 10.96 7.77 85.13 0.66 11.62 16 27 O -0.48 -14.76 11.66 -66.40 -0.77 -15.53 16 28 N -0.53 -14.66 10.28 -296.07 -3.04 -17.70 16 29 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.11 0.72 8.07 -2.39 -0.02 0.70 16 31 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 33 H 0.15 3.42 6.52 -2.91 -0.02 3.40 16 34 H 0.40 13.28 5.86 -92.70 -0.54 12.74 16 35 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.06 1.99 6.84 -2.38 -0.02 1.97 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.07 1.92 7.31 -2.39 -0.02 1.90 16 40 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 41 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 42 H 0.01 0.70 7.57 -2.39 -0.02 0.68 16 43 H 0.01 0.66 7.68 -2.39 -0.02 0.64 16 44 H 0.06 2.48 7.17 -2.39 -0.02 2.46 16 45 H 0.08 2.94 8.14 -2.38 -0.02 2.92 16 46 H 0.41 9.86 9.06 -74.05 -0.67 9.19 16 Total: -1.00 -70.90 366.28 -0.12 -71.02 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: -0.19 Total: 31.25 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: 5.32 Total: 17.92 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -6.72 Total: -128.01 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -0.55 Total: -37.20 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -70.90 -0.12 -71.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992270805.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.592 kcal (2) G-P(sol) polarization free energy of solvation -70.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds