Wall clock time and date at job start Tue Mar 31 2020 16:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35645 * 116.99941 * 2 1 4 4 C 1.39346 * 120.54264 * 0.30022 * 3 2 1 5 5 C 1.38305 * 118.43816 * 180.22051 * 4 3 2 6 6 C 1.50694 * 120.27615 * 179.78114 * 5 4 3 7 7 C 1.38764 * 119.44601 * 359.50294 * 5 4 3 8 8 N 1.31377 * 121.06755 * 0.23088 * 7 5 4 9 9 C 1.32855 * 121.69694 * 0.02780 * 8 7 5 10 10 C 1.47831 * 119.78712 * 179.97438 * 9 8 7 11 11 O 1.21559 * 120.00253 * 179.97438 * 10 9 8 12 12 N 1.34776 * 119.99784 * 359.97438 * 10 9 8 13 13 C 1.46502 * 120.00008 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.46858 * 180.02562 * 13 12 10 15 15 C 1.29452 * 117.69623 * 95.00361 * 14 13 12 16 16 C 1.50318 * 123.65268 * 180.85558 * 15 14 13 17 17 N 1.47007 * 109.16761 * 349.01915 * 16 15 14 18 18 C 1.36936 * 121.37743 * 222.96867 * 17 16 15 19 19 H 1.07998 * 120.00212 * 155.97059 * 18 17 16 20 20 C 1.38815 * 119.99873 * 335.97180 * 18 17 16 21 21 N 1.31625 * 120.00212 * 344.51392 * 20 18 17 22 22 Si 1.86802 * 120.00090 * 164.51179 * 20 18 17 23 23 H 1.48505 * 109.46663 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46813 * 119.99910 * 22 20 18 25 25 H 1.48495 * 109.47003 * 240.00169 * 22 20 18 26 26 C 1.47334 * 117.24752 * 42.94864 * 17 16 15 27 27 C 1.49969 * 117.69615 * 274.73681 * 14 13 12 28 28 H 1.08996 * 109.47067 * 59.99822 * 1 2 3 29 29 H 1.08994 * 109.47370 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46867 * 300.00355 * 1 2 3 31 31 H 1.07996 * 120.78079 * 359.97438 * 4 3 2 32 32 H 1.08997 * 109.47157 * 269.71756 * 6 5 4 33 33 H 1.09002 * 109.47293 * 29.71983 * 6 5 4 34 34 H 1.09002 * 109.47128 * 149.71726 * 6 5 4 35 35 H 1.07998 * 119.47066 * 180.25481 * 7 5 4 36 36 H 0.97004 * 119.99904 * 359.97438 * 12 10 9 37 37 H 1.08999 * 109.46946 * 300.00112 * 13 12 10 38 38 H 1.09000 * 109.47045 * 60.00470 * 13 12 10 39 39 H 1.08005 * 118.17283 * 0.87281 * 15 14 13 40 40 H 1.08999 * 109.52124 * 108.92911 * 16 15 14 41 41 H 1.09003 * 109.52474 * 229.11406 * 16 15 14 42 42 H 0.96999 * 120.00070 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.78481 * 57.80888 * 26 17 16 44 44 H 1.09001 * 109.77845 * 178.61882 * 26 17 16 45 45 H 1.09003 * 109.31732 * 281.29516 * 27 14 13 46 46 H 1.09000 * 109.31389 * 40.71851 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2970 2.3844 0.0063 5 6 1.9697 3.5928 0.0013 6 6 1.2021 4.8896 0.0029 7 6 3.3573 3.6011 0.0008 8 7 4.0420 2.4799 0.0005 9 6 3.4411 1.2950 0.0000 10 6 4.2532 0.0597 -0.0010 11 8 3.7074 -1.0265 -0.0010 12 7 5.5987 0.1378 -0.0020 13 6 6.4035 -1.0863 -0.0035 14 6 7.8666 -0.7254 -0.0037 15 6 8.4752 -0.6796 1.1380 16 6 9.9255 -0.3169 1.2949 17 7 10.5634 -0.2943 -0.0294 18 6 11.8023 -0.8408 -0.2334 19 1 12.0923 -1.1677 -1.2211 20 6 12.6854 -0.9747 0.8292 21 7 12.4724 -0.3164 1.9489 22 14 14.1761 -2.0892 0.6700 23 1 14.1878 -2.7104 -0.6788 24 1 15.4137 -1.2901 0.8574 25 1 14.1118 -3.1524 1.7047 26 6 9.8145 0.3403 -1.1281 27 6 8.5167 -0.4507 -1.3270 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2175 2.3528 0.0108 32 1 1.0167 5.2033 -1.0244 33 1 0.2514 4.7485 0.5169 34 1 1.7831 5.6551 0.5172 35 1 3.8830 4.5445 0.0012 36 1 6.0342 1.0046 -0.0024 37 1 6.1744 -1.6729 0.8862 38 1 6.1731 -1.6714 -0.8938 39 1 7.9094 -0.9153 2.0272 40 1 10.0070 0.6677 1.7554 41 1 10.4199 -1.0566 1.9247 42 1 13.0894 -0.4102 2.6915 43 1 9.5848 1.3740 -0.8693 44 1 10.4064 0.3112 -2.0429 45 1 8.7385 -1.3957 -1.8228 46 1 7.8353 0.1287 -1.9500 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000774094.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:59 Heat of formation + Delta-G solvation = 3.202813 kcal Electronic energy + Delta-G solvation = -27652.937844 eV Core-core repulsion = 23737.079046 eV Total energy + Delta-G solvation = -3915.858798 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.21649 -39.14202 -38.54256 -37.61426 -34.81805 -34.14365 -32.72044 -31.30089 -30.81099 -29.67104 -28.59904 -27.79617 -26.54893 -24.34467 -23.64179 -22.78536 -22.54762 -21.10685 -20.62347 -18.51882 -17.78062 -17.61785 -17.46762 -16.31080 -15.82665 -15.55455 -15.33895 -15.09903 -14.84629 -14.44316 -14.33502 -14.10586 -13.91271 -13.67358 -13.56805 -13.28215 -13.16125 -13.05558 -12.70940 -12.60751 -12.17581 -11.95230 -11.80923 -11.80277 -11.50097 -11.28321 -10.88532 -10.71633 -10.36077 -10.27982 -10.24811 -9.90889 -9.78967 -9.76479 -9.52058 -8.89399 -8.64902 -8.61507 -7.99246 -6.70678 -5.76535 -3.15097 0.37918 0.89931 2.65940 2.71857 2.82758 3.40128 3.47727 3.49844 3.50320 3.66965 4.04232 4.15785 4.39875 4.52333 4.53187 4.60152 4.67851 4.75569 5.04447 5.06749 5.10222 5.16728 5.23789 5.41247 5.45992 5.46679 5.52747 5.65356 5.70681 5.91173 6.01196 6.04425 6.15035 6.24837 6.40867 6.55072 6.65351 6.79417 6.85942 6.93596 7.23263 7.31658 7.38146 7.44414 7.77091 7.81294 7.87759 8.38196 8.41420 9.22892 9.85776 10.44127 11.33927 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.023310 B = 0.002263 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.892462 B =12371.430306 C =13049.362639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.272 6.272 3 C 0.141 3.859 4 C -0.181 4.181 5 C -0.075 4.075 6 C -0.115 4.115 7 C 0.059 3.941 8 N -0.413 5.413 9 C 0.040 3.960 10 C 0.567 3.433 11 O -0.524 6.524 12 N -0.703 5.703 13 C 0.157 3.843 14 C -0.165 4.165 15 C -0.124 4.124 16 C 0.194 3.806 17 N -0.596 5.596 18 C -0.243 4.243 19 H 0.069 0.931 20 C -0.003 4.003 21 N -0.910 5.910 22 Si 0.904 3.096 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.289 1.289 26 C 0.144 3.856 27 C -0.090 4.090 28 H 0.056 0.944 29 H 0.106 0.894 30 H 0.056 0.944 31 H 0.145 0.855 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.165 0.835 36 H 0.410 0.590 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.041 0.959 41 H 0.093 0.907 42 H 0.253 0.747 43 H 0.024 0.976 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.680 9.053 -3.554 28.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.181 6.181 3 C 0.090 3.910 4 C -0.207 4.207 5 C -0.078 4.078 6 C -0.172 4.172 7 C -0.102 4.102 8 N -0.124 5.124 9 C -0.099 4.099 10 C 0.352 3.648 11 O -0.400 6.400 12 N -0.354 5.354 13 C 0.035 3.965 14 C -0.165 4.165 15 C -0.145 4.145 16 C 0.069 3.931 17 N -0.319 5.319 18 C -0.373 4.373 19 H 0.087 0.913 20 C -0.200 4.200 21 N -0.555 5.555 22 Si 0.734 3.266 23 H -0.203 1.203 24 H -0.218 1.218 25 H -0.216 1.216 26 C 0.017 3.983 27 C -0.129 4.129 28 H 0.075 0.925 29 H 0.124 0.876 30 H 0.075 0.925 31 H 0.163 0.837 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.183 0.817 36 H 0.246 0.754 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.059 0.941 41 H 0.111 0.889 42 H 0.063 0.937 43 H 0.042 0.958 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -25.934 7.979 -3.424 27.349 hybrid contribution -0.303 0.030 0.103 0.321 sum -26.237 8.009 -3.321 27.632 Atomic orbital electron populations 1.23220 0.78612 1.04707 1.01129 1.86440 1.20839 1.24493 1.86329 1.20048 0.92276 0.85642 0.93050 1.21608 1.00862 0.91256 1.06968 1.21005 0.95275 0.95767 0.95707 1.20819 0.99886 0.93371 1.03130 1.22640 0.90543 0.96497 1.00560 1.67640 1.39693 0.97353 1.07717 1.20741 0.88560 0.92964 1.07656 1.17623 0.82404 0.87152 0.77663 1.90820 1.71830 1.27564 1.49781 1.46014 1.05114 1.11019 1.73275 1.20492 0.88295 0.85852 1.01863 1.20481 0.93003 1.06801 0.96247 1.23269 0.99745 0.95391 0.96114 1.19754 0.85116 1.00018 0.88168 1.44142 1.16670 1.66329 1.04748 1.19230 0.89976 1.32554 0.95508 0.91323 1.24992 0.97793 0.99836 0.97422 1.70023 1.38219 1.42337 1.04949 0.86184 0.82519 0.80354 0.77515 1.20320 1.21798 1.21614 1.20992 0.91144 0.93711 0.92405 1.20783 0.97839 1.00642 0.93623 0.92543 0.87594 0.92543 0.83733 0.90194 0.91054 0.90409 0.81748 0.75361 0.91577 0.91509 0.88790 0.94096 0.88922 0.93694 0.95766 0.92511 0.91748 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.83 101.05 0.99 1.12 16 2 O -0.27 -3.38 8.56 -40.58 -0.35 -3.73 16 3 C 0.14 1.70 6.71 -38.55 -0.26 1.44 16 4 C -0.18 -1.53 8.80 -39.14 -0.34 -1.87 16 5 C -0.08 -0.57 5.90 -104.41 -0.62 -1.19 16 6 C -0.11 -0.46 10.03 36.00 0.36 -0.10 16 7 C 0.06 0.55 10.85 -17.55 -0.19 0.36 16 8 N -0.41 -5.19 9.54 -9.71 -0.09 -5.29 16 9 C 0.04 0.56 6.76 -82.88 -0.56 0.00 16 10 C 0.57 9.30 7.80 -12.34 -0.10 9.20 16 11 O -0.52 -9.93 15.14 -16.64 -0.25 -10.18 16 12 N -0.70 -10.96 5.54 -62.43 -0.35 -11.31 16 13 C 0.16 2.58 5.66 -5.19 -0.03 2.55 16 14 C -0.16 -2.99 5.22 -100.99 -0.53 -3.51 16 15 C -0.12 -2.47 9.47 -35.78 -0.34 -2.81 16 16 C 0.19 4.69 5.23 -5.10 -0.03 4.66 16 17 N -0.60 -15.10 3.01 -173.57 -0.52 -15.63 16 18 C -0.24 -6.73 9.71 -15.06 -0.15 -6.88 16 19 H 0.07 1.87 7.88 -52.49 -0.41 1.45 16 20 C 0.00 -0.08 5.01 -17.43 -0.09 -0.16 16 21 N -0.91 -26.43 11.08 55.49 0.61 -25.82 16 22 Si 0.90 21.93 29.58 -169.99 -5.03 16.91 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 C 0.14 3.04 6.59 -3.44 -0.02 3.02 16 27 C -0.09 -1.63 5.95 -28.09 -0.17 -1.80 16 28 H 0.06 0.29 7.71 -51.93 -0.40 -0.11 16 29 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.29 7.68 -51.92 -0.40 -0.11 16 31 H 0.15 0.78 6.46 -52.49 -0.34 0.45 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.22 8.09 -51.93 -0.42 -0.20 16 34 H 0.08 0.24 8.09 -51.93 -0.42 -0.18 16 35 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.41 6.14 7.79 -40.82 -0.32 5.82 16 37 H 0.07 1.10 7.78 -51.93 -0.40 0.70 16 38 H 0.07 1.10 8.11 -51.93 -0.42 0.68 16 39 H 0.09 1.69 7.73 -52.48 -0.41 1.29 16 40 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.09 2.48 6.41 -51.93 -0.33 2.15 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -33.74 380.19 -9.08 -42.83 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.78 Total: 2.47 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -2.06 Total: 4.03 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.35 Total: -58.04 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.60 Total: -13.91 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.74 -9.08 -42.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000774094.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.029 kcal (2) G-P(sol) polarization free energy of solvation -33.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds