Wall clock time and date at job start Tue Mar 31 2020 16:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35645 * 116.99941 * 2 1 4 4 C 1.39346 * 120.54264 * 0.30022 * 3 2 1 5 5 C 1.38305 * 118.43816 * 180.22051 * 4 3 2 6 6 C 1.50694 * 120.27615 * 179.78114 * 5 4 3 7 7 C 1.38764 * 119.44601 * 359.50294 * 5 4 3 8 8 N 1.31377 * 121.06755 * 0.23088 * 7 5 4 9 9 C 1.32855 * 121.69694 * 0.02780 * 8 7 5 10 10 C 1.47831 * 119.78712 * 179.97438 * 9 8 7 11 11 O 1.21559 * 120.00253 * 179.97438 * 10 9 8 12 12 N 1.34776 * 119.99784 * 359.97438 * 10 9 8 13 13 C 1.46502 * 120.00008 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.46858 * 180.02562 * 13 12 10 15 15 C 1.29452 * 117.69623 * 95.00361 * 14 13 12 16 16 C 1.50318 * 123.65268 * 180.85558 * 15 14 13 17 17 N 1.47007 * 109.16761 * 349.01915 * 16 15 14 18 18 C 1.36936 * 121.37743 * 222.96867 * 17 16 15 19 19 H 1.07998 * 120.00212 * 155.97059 * 18 17 16 20 20 C 1.38815 * 119.99873 * 335.97180 * 18 17 16 21 21 N 1.31625 * 120.00212 * 344.51392 * 20 18 17 22 22 Si 1.86802 * 120.00090 * 164.51179 * 20 18 17 23 23 H 1.48505 * 109.46663 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46813 * 119.99910 * 22 20 18 25 25 H 1.48495 * 109.47003 * 240.00169 * 22 20 18 26 26 C 1.47334 * 117.24752 * 42.94864 * 17 16 15 27 27 C 1.49969 * 117.69615 * 274.73681 * 14 13 12 28 28 H 1.08996 * 109.47067 * 59.99822 * 1 2 3 29 29 H 1.08994 * 109.47370 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46867 * 300.00355 * 1 2 3 31 31 H 1.07996 * 120.78079 * 359.97438 * 4 3 2 32 32 H 1.08997 * 109.47157 * 269.71756 * 6 5 4 33 33 H 1.09002 * 109.47293 * 29.71983 * 6 5 4 34 34 H 1.09002 * 109.47128 * 149.71726 * 6 5 4 35 35 H 1.07998 * 119.47066 * 180.25481 * 7 5 4 36 36 H 0.97004 * 119.99904 * 359.97438 * 12 10 9 37 37 H 1.08999 * 109.46946 * 300.00112 * 13 12 10 38 38 H 1.09000 * 109.47045 * 60.00470 * 13 12 10 39 39 H 1.08005 * 118.17283 * 0.87281 * 15 14 13 40 40 H 1.08999 * 109.52124 * 108.92911 * 16 15 14 41 41 H 1.09003 * 109.52474 * 229.11406 * 16 15 14 42 42 H 0.96999 * 120.00070 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.78481 * 57.80888 * 26 17 16 44 44 H 1.09001 * 109.77845 * 178.61882 * 26 17 16 45 45 H 1.09003 * 109.31732 * 281.29516 * 27 14 13 46 46 H 1.09000 * 109.31389 * 40.71851 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2970 2.3844 0.0063 5 6 1.9697 3.5928 0.0013 6 6 1.2021 4.8896 0.0029 7 6 3.3573 3.6011 0.0008 8 7 4.0420 2.4799 0.0005 9 6 3.4411 1.2950 0.0000 10 6 4.2532 0.0597 -0.0010 11 8 3.7074 -1.0265 -0.0010 12 7 5.5987 0.1378 -0.0020 13 6 6.4035 -1.0863 -0.0035 14 6 7.8666 -0.7254 -0.0037 15 6 8.4752 -0.6796 1.1380 16 6 9.9255 -0.3169 1.2949 17 7 10.5634 -0.2943 -0.0294 18 6 11.8023 -0.8408 -0.2334 19 1 12.0923 -1.1677 -1.2211 20 6 12.6854 -0.9747 0.8292 21 7 12.4724 -0.3164 1.9489 22 14 14.1761 -2.0892 0.6700 23 1 14.1878 -2.7104 -0.6788 24 1 15.4137 -1.2901 0.8574 25 1 14.1118 -3.1524 1.7047 26 6 9.8145 0.3403 -1.1281 27 6 8.5167 -0.4507 -1.3270 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2175 2.3528 0.0108 32 1 1.0167 5.2033 -1.0244 33 1 0.2514 4.7485 0.5169 34 1 1.7831 5.6551 0.5172 35 1 3.8830 4.5445 0.0012 36 1 6.0342 1.0046 -0.0024 37 1 6.1744 -1.6729 0.8862 38 1 6.1731 -1.6714 -0.8938 39 1 7.9094 -0.9153 2.0272 40 1 10.0070 0.6677 1.7554 41 1 10.4199 -1.0566 1.9247 42 1 13.0894 -0.4102 2.6915 43 1 9.5848 1.3740 -0.8693 44 1 10.4064 0.3112 -2.0429 45 1 8.7385 -1.3957 -1.8228 46 1 7.8353 0.1287 -1.9500 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000774094.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:58 Heat of formation + Delta-G solvation = -18.440162 kcal Electronic energy + Delta-G solvation = -27653.876354 eV Core-core repulsion = 23737.079046 eV Total energy + Delta-G solvation = -3916.797308 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.02885 -40.36503 -39.30085 -39.23218 -36.39368 -34.91486 -34.35052 -32.59264 -32.02635 -31.42776 -29.37075 -28.67341 -27.83340 -25.90707 -24.58790 -24.32745 -23.46966 -22.77468 -21.75879 -19.68571 -19.32505 -18.53665 -18.33857 -17.43591 -17.10134 -16.99317 -16.75206 -16.29564 -16.16134 -15.63347 -15.38299 -15.20870 -15.07119 -14.93600 -14.74228 -14.54307 -14.37187 -13.94955 -13.70995 -13.58889 -13.42912 -13.26654 -12.99888 -12.91872 -12.80743 -12.60975 -12.41306 -12.39612 -12.20073 -12.08865 -11.70840 -11.37737 -11.25182 -10.70842 -10.67285 -10.53755 -10.13365 -9.66534 -9.46484 -8.75299 -7.87869 -5.29384 -0.41420 0.19379 1.16377 1.46799 1.48596 1.59046 1.70750 2.15458 2.34042 2.51566 2.77027 3.21370 3.29072 3.53293 3.61497 3.69800 3.86375 3.89935 3.96175 4.05459 4.23237 4.28896 4.33919 4.42602 4.52742 4.58920 4.64035 4.72109 4.72643 4.82168 4.84935 4.87198 4.91040 5.09592 5.14855 5.18750 5.20723 5.35117 5.41320 5.46600 5.47128 5.61838 5.75639 6.15331 6.18580 6.34156 6.44292 6.78912 7.13465 7.18263 7.83127 8.37830 9.21064 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.023310 B = 0.002263 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.892462 B =12371.430306 C =13049.362639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.307 6.307 3 C 0.132 3.868 4 C -0.176 4.176 5 C -0.058 4.058 6 C -0.114 4.114 7 C 0.051 3.949 8 N -0.435 5.435 9 C -0.005 4.005 10 C 0.565 3.435 11 O -0.560 6.560 12 N -0.700 5.700 13 C 0.167 3.833 14 C -0.139 4.139 15 C -0.142 4.142 16 C 0.207 3.793 17 N -0.615 5.615 18 C -0.255 4.255 19 H 0.071 0.929 20 C -0.056 4.056 21 N -0.940 5.940 22 Si 0.969 3.031 23 H -0.267 1.267 24 H -0.291 1.291 25 H -0.292 1.292 26 C 0.140 3.860 27 C -0.083 4.083 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.178 0.822 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.191 0.809 36 H 0.414 0.586 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.014 0.986 41 H 0.059 0.941 42 H 0.250 0.750 43 H 0.027 0.973 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.271 10.539 -4.751 31.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.218 6.218 3 C 0.081 3.919 4 C -0.202 4.202 5 C -0.060 4.060 6 C -0.170 4.170 7 C -0.112 4.112 8 N -0.146 5.146 9 C -0.141 4.141 10 C 0.352 3.648 11 O -0.438 6.438 12 N -0.351 5.351 13 C 0.044 3.956 14 C -0.140 4.140 15 C -0.162 4.162 16 C 0.081 3.919 17 N -0.339 5.339 18 C -0.385 4.385 19 H 0.089 0.911 20 C -0.251 4.251 21 N -0.587 5.587 22 Si 0.797 3.203 23 H -0.191 1.191 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.014 3.986 27 C -0.122 4.122 28 H 0.094 0.906 29 H 0.131 0.869 30 H 0.093 0.907 31 H 0.196 0.804 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.208 0.792 36 H 0.250 0.750 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.128 0.872 40 H 0.032 0.968 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.045 0.955 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -28.545 9.466 -4.647 30.431 hybrid contribution 0.355 -0.279 0.412 0.611 sum -28.190 9.187 -4.235 29.950 Atomic orbital electron populations 1.23530 0.76112 1.05914 1.02970 1.86383 1.23619 1.25379 1.86397 1.20219 0.91946 0.86733 0.93015 1.21988 1.02345 0.90131 1.05765 1.21457 0.94846 0.97162 0.92522 1.20950 1.00232 0.91403 1.04447 1.23235 0.91805 0.96402 0.99743 1.67544 1.40744 0.97740 1.08582 1.20394 0.89323 0.92450 1.11913 1.18056 0.82374 0.87882 0.76527 1.90778 1.72389 1.29114 1.51531 1.45893 1.05143 1.10652 1.73404 1.20296 0.86952 0.86350 1.01983 1.20595 0.93790 1.03947 0.95641 1.22959 0.97478 0.98069 0.97700 1.19392 0.87376 0.97747 0.87343 1.44417 1.16633 1.66872 1.05955 1.19558 0.90928 1.32360 0.95651 0.91099 1.25766 1.00705 1.01310 0.97280 1.70181 1.39220 1.43748 1.05553 0.85171 0.79053 0.78315 0.77715 1.19110 1.21846 1.21845 1.21164 0.92081 0.94022 0.91286 1.20718 0.96817 1.00697 0.93976 0.90563 0.86930 0.90656 0.80432 0.88666 0.89431 0.89114 0.79188 0.74964 0.91870 0.91102 0.87159 0.96796 0.92324 0.94116 0.95506 0.92027 0.91535 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.83 113.37 1.11 1.22 16 2 O -0.31 -7.55 8.56 -68.60 -0.59 -8.14 16 3 C 0.13 3.07 6.71 22.94 0.15 3.23 16 4 C -0.18 -2.48 8.80 22.55 0.20 -2.28 16 5 C -0.06 -0.68 5.90 -19.72 -0.12 -0.80 16 6 C -0.11 -0.39 10.03 71.23 0.71 0.32 16 7 C 0.05 0.83 10.85 84.89 0.92 1.76 16 8 N -0.44 -10.62 9.54 -184.63 -1.76 -12.38 16 9 C 0.00 -0.13 6.76 41.93 0.28 0.16 16 10 C 0.57 18.85 7.80 86.78 0.68 19.53 16 11 O -0.56 -21.77 15.14 17.09 0.26 -21.51 16 12 N -0.70 -21.81 5.54 -469.71 -2.60 -24.41 16 13 C 0.17 5.41 5.66 85.63 0.48 5.89 16 14 C -0.14 -4.97 5.22 -15.14 -0.08 -5.05 16 15 C -0.14 -5.70 9.47 27.11 0.26 -5.44 16 16 C 0.21 10.37 5.23 85.42 0.45 10.82 16 17 N -0.61 -31.75 3.01 -703.04 -2.11 -33.87 16 18 C -0.26 -14.31 9.71 84.03 0.82 -13.49 16 19 H 0.07 3.86 7.88 -2.91 -0.02 3.83 16 20 C -0.06 -3.19 5.01 84.86 0.43 -2.76 16 21 N -0.94 -56.46 11.08 21.65 0.24 -56.22 16 22 Si 0.97 45.81 29.58 68.60 2.03 47.84 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 26 C 0.14 5.85 6.59 86.32 0.57 6.42 16 27 C -0.08 -2.92 5.95 29.72 0.18 -2.75 16 28 H 0.08 0.57 7.71 -2.39 -0.02 0.56 16 29 H 0.11 1.12 8.14 -2.39 -0.02 1.11 16 30 H 0.07 0.58 7.68 -2.38 -0.02 0.56 16 31 H 0.18 1.18 6.46 -2.91 -0.02 1.16 16 32 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 33 H 0.09 0.09 8.09 -2.39 -0.02 0.07 16 34 H 0.09 0.15 8.09 -2.39 -0.02 0.13 16 35 H 0.19 1.92 8.06 -2.91 -0.02 1.89 16 36 H 0.41 12.30 7.79 -92.71 -0.72 11.58 16 37 H 0.06 2.11 7.78 -2.39 -0.02 2.09 16 38 H 0.07 2.27 8.11 -2.39 -0.02 2.25 16 39 H 0.11 4.04 7.73 -2.91 -0.02 4.02 16 40 H 0.01 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.06 3.31 6.41 -2.39 -0.02 3.29 16 42 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 43 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.06 2.48 7.96 -2.39 -0.02 2.47 16 45 H 0.07 2.36 8.14 -2.39 -0.02 2.35 16 46 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -76.56 380.19 2.78 -73.77 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.28 Total: 18.15 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: 7.04 Total: 16.76 kcal Atomic # 7 Polarization: -120.64 SS G_CDS: -6.23 Total: -126.88 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.33 Total: -29.65 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -76.56 2.78 -73.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000774094.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.330 kcal (2) G-P(sol) polarization free energy of solvation -76.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds