Wall clock time and date at job start Tue Mar 31 2020 17:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38358 * 119.40910 * 2 1 4 4 C 1.38330 * 119.45657 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.82267 * 179.97438 * 4 3 2 6 6 C 1.39985 * 118.35286 * 0.02562 * 4 3 2 7 7 C 1.47530 * 120.59947 * 179.97438 * 6 4 3 8 8 O 1.21589 * 119.99705 * 89.99650 * 7 6 4 9 9 N 1.34773 * 119.99992 * 269.99859 * 7 6 4 10 10 C 1.46496 * 119.99913 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.47218 * 179.97438 * 10 9 7 12 12 C 1.29450 * 117.69312 * 94.99764 * 11 10 9 13 13 C 1.50328 * 123.64737 * 180.86052 * 12 11 10 14 14 N 1.46998 * 109.17070 * 349.02195 * 13 12 11 15 15 C 1.36931 * 121.38032 * 222.97029 * 14 13 12 16 16 H 1.07999 * 120.00200 * 155.97036 * 15 14 13 17 17 C 1.38818 * 119.99930 * 335.97418 * 15 14 13 18 18 N 1.31616 * 119.99424 * 344.51156 * 17 15 14 19 19 Si 1.86793 * 120.00033 * 164.51117 * 17 15 14 20 20 H 1.48499 * 109.47596 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47162 * 119.99807 * 19 17 15 22 22 H 1.48498 * 109.47325 * 239.99776 * 19 17 15 23 23 C 1.47341 * 117.24651 * 42.94668 * 14 13 12 24 24 C 1.49966 * 117.69514 * 274.74080 * 11 10 9 25 25 C 1.40282 * 118.80571 * 0.26160 * 6 4 3 26 26 O 1.35422 * 119.80117 * 179.72495 * 25 6 4 27 27 N 1.31879 * 119.40651 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47159 * 89.99603 * 1 2 3 29 29 H 1.08996 * 109.47400 * 210.00100 * 1 2 3 30 30 H 1.09002 * 109.46998 * 330.00341 * 1 2 3 31 31 H 1.07998 * 120.27163 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.47214 * 270.02562 * 5 4 3 33 33 H 1.09004 * 109.47268 * 30.02998 * 5 4 3 34 34 H 1.08999 * 109.47135 * 150.02772 * 5 4 3 35 35 H 0.97001 * 119.99919 * 359.97438 * 9 7 6 36 36 H 1.09007 * 109.47305 * 59.99701 * 10 9 7 37 37 H 1.09003 * 109.47431 * 299.99836 * 10 9 7 38 38 H 1.08000 * 118.17404 * 0.88545 * 12 11 10 39 39 H 1.08997 * 109.52109 * 108.93600 * 13 12 11 40 40 H 1.09001 * 109.51633 * 229.11453 * 13 12 11 41 41 H 0.97005 * 119.99607 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.78033 * 57.81404 * 23 14 13 43 43 H 1.09001 * 109.77700 * 178.61818 * 23 14 13 44 44 H 1.08997 * 109.31931 * 281.28933 * 24 11 10 45 45 H 1.09009 * 109.31429 * 40.71615 * 24 11 10 46 46 H 0.96703 * 113.99477 * 90.00481 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2064 0.0005 5 6 4.3408 2.5012 0.0000 6 6 4.2355 -0.0249 0.0005 7 6 5.7097 -0.0816 0.0005 8 8 6.3172 -0.1048 1.0535 9 7 6.3831 -0.1074 -1.1667 10 6 7.8470 -0.1631 -1.1666 11 6 8.3490 -0.1831 -2.5875 12 6 8.6868 0.9464 -3.1221 13 6 9.1859 1.0836 -4.5335 14 7 9.4683 -0.2524 -5.0777 15 6 10.5972 -0.4991 -5.8124 16 1 10.9929 -1.5021 -5.8742 17 6 11.2331 0.5401 -6.4778 18 7 10.6077 1.6834 -6.6625 19 14 12.9761 0.3158 -7.1109 20 1 13.4520 -1.0507 -6.7773 21 1 12.9953 0.5012 -8.5842 22 1 13.8669 1.3189 -6.4742 23 6 8.4867 -1.3154 -4.7995 24 6 8.4275 -1.5108 -3.2803 25 6 3.4757 -1.2042 -0.0057 26 8 4.0991 -2.4064 -0.0114 27 7 2.1545 -1.1489 0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6412 2.1376 0.0004 32 1 4.5267 2.8130 -1.0278 33 1 3.7621 3.2690 0.5136 34 1 5.2914 2.3582 0.5138 35 1 5.8984 -0.0892 -2.0067 36 1 8.1763 -1.0661 -0.6525 37 1 8.2439 0.7126 -0.6530 38 1 8.6059 1.8397 -2.5207 39 1 8.4255 1.5719 -5.1429 40 1 10.0982 1.6801 -4.5407 41 1 11.0522 2.4098 -7.1271 42 1 7.5071 -1.0206 -5.1757 43 1 8.8021 -2.2430 -5.2772 44 1 9.3200 -2.0397 -2.9461 45 1 7.5465 -2.1015 -3.0286 46 1 4.2797 -2.7600 0.8703 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001016154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:03 Heat of formation + Delta-G solvation = -7.895372 kcal Electronic energy + Delta-G solvation = -27973.797309 eV Core-core repulsion = 24057.457257 eV Total energy + Delta-G solvation = -3916.340051 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.21376 -39.33527 -37.76563 -37.62786 -34.97976 -34.53124 -32.90123 -32.10348 -30.92291 -29.77479 -28.86367 -27.93752 -26.74364 -24.39180 -23.49068 -22.76388 -22.04513 -21.12512 -20.61812 -18.72247 -18.22785 -17.61275 -17.47598 -16.31016 -15.82738 -15.72268 -15.23373 -14.92519 -14.74623 -14.49217 -14.10213 -13.83770 -13.69257 -13.65160 -13.46127 -13.35072 -13.21922 -12.87281 -12.75041 -12.32852 -12.29668 -12.19416 -12.06306 -11.93686 -11.59257 -11.39245 -10.94820 -10.77349 -10.53522 -10.35752 -10.30014 -9.90084 -9.85038 -9.69413 -9.60294 -9.13759 -9.05218 -8.71537 -8.09993 -6.77778 -5.82854 -3.21486 0.45294 0.76093 2.42050 2.53640 2.99402 3.27428 3.35907 3.43827 3.45968 3.51923 4.12649 4.17814 4.47078 4.54549 4.64633 4.84433 4.94589 5.03099 5.11218 5.18442 5.22153 5.25379 5.31387 5.36909 5.47319 5.54686 5.59791 5.69008 5.78445 5.79197 5.89042 6.05010 6.11120 6.14900 6.31928 6.36914 6.48534 6.71216 6.84944 7.12359 7.12771 7.21706 7.28126 7.46453 7.53709 7.69791 7.79091 8.08520 8.34900 9.16550 9.79169 10.37129 11.27716 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.021549 B = 0.002405 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.070381 B =11638.567920 C =11787.611804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.167 3.833 3 C -0.187 4.187 4 C 0.013 3.987 5 C -0.127 4.127 6 C -0.202 4.202 7 C 0.574 3.426 8 O -0.539 6.539 9 N -0.705 5.705 10 C 0.156 3.844 11 C -0.166 4.166 12 C -0.124 4.124 13 C 0.194 3.806 14 N -0.595 5.595 15 C -0.244 4.244 16 H 0.069 0.931 17 C -0.002 4.002 18 N -0.910 5.910 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.144 3.856 24 C -0.091 4.091 25 C 0.356 3.644 26 O -0.474 6.474 27 N -0.507 5.507 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.145 0.855 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.403 0.597 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.041 0.959 40 H 0.094 0.906 41 H 0.253 0.747 42 H 0.023 0.977 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.888 0.191 14.809 24.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.030 3.970 3 C -0.207 4.207 4 C 0.005 3.995 5 C -0.183 4.183 6 C -0.208 4.208 7 C 0.358 3.642 8 O -0.417 6.417 9 N -0.354 5.354 10 C 0.034 3.966 11 C -0.166 4.166 12 C -0.144 4.144 13 C 0.069 3.931 14 N -0.319 5.319 15 C -0.374 4.374 16 H 0.087 0.913 17 C -0.200 4.200 18 N -0.555 5.555 19 Si 0.735 3.265 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.216 1.216 23 C 0.017 3.983 24 C -0.130 4.130 25 C 0.176 3.824 26 O -0.282 6.282 27 N -0.227 5.227 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.163 0.837 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.238 0.762 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.059 0.941 40 H 0.112 0.888 41 H 0.063 0.937 42 H 0.041 0.959 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -18.761 -0.462 14.866 23.941 hybrid contribution 1.210 0.594 -0.229 1.367 sum -17.551 0.132 14.636 22.853 Atomic orbital electron populations 1.20805 0.88102 1.03869 1.03647 1.21187 0.97008 0.87059 0.91767 1.21788 0.93616 0.99663 1.05622 1.20285 0.93700 0.94225 0.91310 1.20971 1.00454 0.93013 1.03872 1.20918 0.95086 0.94130 1.10698 1.17779 0.85884 0.76241 0.84312 1.90810 1.69355 1.50306 1.31252 1.46200 1.07990 1.73114 1.08133 1.20528 0.78211 1.01979 0.95852 1.20488 1.05473 0.96402 0.94278 1.23290 0.95451 0.96090 0.99615 1.19758 0.99910 0.87942 0.85493 1.44138 1.21971 1.05533 1.60211 1.19232 1.00467 0.95007 1.22675 0.91285 1.24993 0.99309 0.97242 0.98449 1.70017 1.35766 1.04677 1.45085 0.86176 0.84625 0.77584 0.78134 1.20294 1.21746 1.21588 1.20992 0.92638 0.92951 0.91694 1.20791 1.00358 0.93574 0.98246 1.19001 0.86339 0.84470 0.92580 1.84710 1.76628 1.32566 1.34309 1.67054 1.09119 1.30441 1.16083 0.89780 0.90114 0.90190 0.83750 0.89392 0.90073 0.90414 0.76203 0.91331 0.91460 0.88792 0.94118 0.88845 0.93661 0.95880 0.92420 0.91656 0.92778 0.73469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.16 36.01 0.37 -0.25 16 2 C 0.17 1.55 6.78 -82.53 -0.56 0.99 16 3 C -0.19 -1.55 9.41 -39.50 -0.37 -1.92 16 4 C 0.01 0.13 5.95 -103.93 -0.62 -0.49 16 5 C -0.13 -1.06 9.69 36.01 0.35 -0.71 16 6 C -0.20 -2.47 5.66 -104.69 -0.59 -3.06 16 7 C 0.57 8.03 5.42 -12.47 -0.07 7.97 16 8 O -0.54 -9.16 17.11 5.29 0.09 -9.07 16 9 N -0.70 -9.50 5.54 -62.53 -0.35 -9.84 16 10 C 0.16 2.32 5.66 -5.19 -0.03 2.29 16 11 C -0.17 -2.80 5.22 -100.99 -0.53 -3.33 16 12 C -0.12 -2.29 9.47 -35.78 -0.34 -2.63 16 13 C 0.19 4.50 5.23 -5.10 -0.03 4.47 16 14 N -0.60 -14.69 3.01 -173.56 -0.52 -15.21 16 15 C -0.24 -6.64 9.71 -15.06 -0.15 -6.78 16 16 H 0.07 1.85 7.88 -52.49 -0.41 1.43 16 17 C 0.00 -0.06 5.01 -17.43 -0.09 -0.15 16 18 N -0.91 -25.91 11.08 55.49 0.61 -25.29 16 19 Si 0.90 21.58 29.58 -169.99 -5.03 16.55 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 23 C 0.14 2.95 6.59 -3.43 -0.02 2.93 16 24 C -0.09 -1.58 5.95 -28.09 -0.17 -1.75 16 25 C 0.36 4.41 7.77 -16.61 -0.13 4.28 16 26 O -0.47 -5.56 13.01 -17.96 -0.23 -5.79 16 27 N -0.51 -6.01 10.28 -9.21 -0.09 -6.10 16 28 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.28 8.07 -51.93 -0.42 -0.14 16 31 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 34 H 0.08 0.79 7.19 -51.93 -0.37 0.42 16 35 H 0.40 5.14 8.45 -40.82 -0.34 4.79 16 36 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16 37 H 0.07 1.00 7.78 -51.93 -0.40 0.60 16 38 H 0.09 1.54 7.73 -52.49 -0.41 1.13 16 39 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.09 2.42 6.41 -51.93 -0.33 2.09 16 41 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 44 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.05 0.84 8.14 -51.92 -0.42 0.41 16 46 H 0.41 3.08 9.06 45.56 0.41 3.50 16 LS Contribution 384.70 15.07 5.80 5.80 Total: -1.00 -33.25 384.70 -8.74 -41.99 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.05 Total: 5.11 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -2.97 Total: 1.86 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.35 Total: -56.45 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.14 Total: -14.87 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.25 -8.74 -41.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001016154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.095 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds