Wall clock time and date at job start Tue Mar 31 2020 17:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38358 * 119.40910 * 2 1 4 4 C 1.38330 * 119.45657 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.82267 * 179.97438 * 4 3 2 6 6 C 1.39985 * 118.35286 * 0.02562 * 4 3 2 7 7 C 1.47530 * 120.59947 * 179.97438 * 6 4 3 8 8 O 1.21589 * 119.99705 * 89.99650 * 7 6 4 9 9 N 1.34773 * 119.99992 * 269.99859 * 7 6 4 10 10 C 1.46496 * 119.99913 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.47218 * 179.97438 * 10 9 7 12 12 C 1.29450 * 117.69312 * 94.99764 * 11 10 9 13 13 C 1.50328 * 123.64737 * 180.86052 * 12 11 10 14 14 N 1.46998 * 109.17070 * 349.02195 * 13 12 11 15 15 C 1.36931 * 121.38032 * 222.97029 * 14 13 12 16 16 H 1.07999 * 120.00200 * 155.97036 * 15 14 13 17 17 C 1.38818 * 119.99930 * 335.97418 * 15 14 13 18 18 N 1.31616 * 119.99424 * 344.51156 * 17 15 14 19 19 Si 1.86793 * 120.00033 * 164.51117 * 17 15 14 20 20 H 1.48499 * 109.47596 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47162 * 119.99807 * 19 17 15 22 22 H 1.48498 * 109.47325 * 239.99776 * 19 17 15 23 23 C 1.47341 * 117.24651 * 42.94668 * 14 13 12 24 24 C 1.49966 * 117.69514 * 274.74080 * 11 10 9 25 25 C 1.40282 * 118.80571 * 0.26160 * 6 4 3 26 26 O 1.35422 * 119.80117 * 179.72495 * 25 6 4 27 27 N 1.31879 * 119.40651 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47159 * 89.99603 * 1 2 3 29 29 H 1.08996 * 109.47400 * 210.00100 * 1 2 3 30 30 H 1.09002 * 109.46998 * 330.00341 * 1 2 3 31 31 H 1.07998 * 120.27163 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.47214 * 270.02562 * 5 4 3 33 33 H 1.09004 * 109.47268 * 30.02998 * 5 4 3 34 34 H 1.08999 * 109.47135 * 150.02772 * 5 4 3 35 35 H 0.97001 * 119.99919 * 359.97438 * 9 7 6 36 36 H 1.09007 * 109.47305 * 59.99701 * 10 9 7 37 37 H 1.09003 * 109.47431 * 299.99836 * 10 9 7 38 38 H 1.08000 * 118.17404 * 0.88545 * 12 11 10 39 39 H 1.08997 * 109.52109 * 108.93600 * 13 12 11 40 40 H 1.09001 * 109.51633 * 229.11453 * 13 12 11 41 41 H 0.97005 * 119.99607 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.78033 * 57.81404 * 23 14 13 43 43 H 1.09001 * 109.77700 * 178.61818 * 23 14 13 44 44 H 1.08997 * 109.31931 * 281.28933 * 24 11 10 45 45 H 1.09009 * 109.31429 * 40.71615 * 24 11 10 46 46 H 0.96703 * 113.99477 * 90.00481 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2064 0.0005 5 6 4.3408 2.5012 0.0000 6 6 4.2355 -0.0249 0.0005 7 6 5.7097 -0.0816 0.0005 8 8 6.3172 -0.1048 1.0535 9 7 6.3831 -0.1074 -1.1667 10 6 7.8470 -0.1631 -1.1666 11 6 8.3490 -0.1831 -2.5875 12 6 8.6868 0.9464 -3.1221 13 6 9.1859 1.0836 -4.5335 14 7 9.4683 -0.2524 -5.0777 15 6 10.5972 -0.4991 -5.8124 16 1 10.9929 -1.5021 -5.8742 17 6 11.2331 0.5401 -6.4778 18 7 10.6077 1.6834 -6.6625 19 14 12.9761 0.3158 -7.1109 20 1 13.4520 -1.0507 -6.7773 21 1 12.9953 0.5012 -8.5842 22 1 13.8669 1.3189 -6.4742 23 6 8.4867 -1.3154 -4.7995 24 6 8.4275 -1.5108 -3.2803 25 6 3.4757 -1.2042 -0.0057 26 8 4.0991 -2.4064 -0.0114 27 7 2.1545 -1.1489 0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6412 2.1376 0.0004 32 1 4.5267 2.8130 -1.0278 33 1 3.7621 3.2690 0.5136 34 1 5.2914 2.3582 0.5138 35 1 5.8984 -0.0892 -2.0067 36 1 8.1763 -1.0661 -0.6525 37 1 8.2439 0.7126 -0.6530 38 1 8.6059 1.8397 -2.5207 39 1 8.4255 1.5719 -5.1429 40 1 10.0982 1.6801 -4.5407 41 1 11.0522 2.4098 -7.1271 42 1 7.5071 -1.0206 -5.1757 43 1 8.8021 -2.2430 -5.2772 44 1 9.3200 -2.0397 -2.9461 45 1 7.5465 -2.1015 -3.0286 46 1 4.2797 -2.7600 0.8703 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001016154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:02 Heat of formation + Delta-G solvation = -32.980593 kcal Electronic energy + Delta-G solvation = -27974.885085 eV Core-core repulsion = 24057.457257 eV Total energy + Delta-G solvation = -3917.427828 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.05277 -40.43693 -39.30355 -38.43701 -36.45999 -35.30167 -34.52111 -32.89828 -32.53937 -31.44948 -29.77841 -28.66856 -28.13697 -25.95542 -24.55663 -24.26062 -23.04961 -22.62701 -21.59292 -19.59141 -19.52368 -19.11993 -18.29294 -17.47378 -17.34064 -17.00054 -16.64097 -16.04278 -15.97558 -15.55928 -15.26691 -15.21328 -15.17780 -14.78520 -14.43514 -14.23584 -14.09356 -13.96237 -13.90558 -13.59122 -13.28993 -13.25112 -12.97551 -12.96197 -12.86411 -12.81253 -12.63506 -12.62597 -12.22523 -12.10878 -11.72523 -11.53248 -11.27193 -10.71185 -10.65342 -10.52207 -10.21669 -9.88403 -9.67725 -8.76710 -7.89735 -5.30897 -0.31505 0.02240 1.14565 1.35331 1.45774 1.47921 1.57977 2.24149 2.30134 2.50240 2.63783 3.27450 3.40201 3.53843 3.58415 3.63521 3.84975 3.92859 3.98436 4.18670 4.27624 4.40786 4.50116 4.50512 4.57414 4.60223 4.64200 4.70368 4.81132 4.81689 4.88648 4.95221 5.01209 5.07361 5.10787 5.18168 5.18772 5.25043 5.37690 5.46281 5.50831 5.60515 5.73323 6.14079 6.32714 6.35900 6.40358 6.78972 6.99974 7.12462 7.81758 8.35719 9.19035 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.021549 B = 0.002405 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.070381 B =11638.567920 C =11787.611804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.161 3.839 3 C -0.177 4.177 4 C 0.007 3.993 5 C -0.124 4.124 6 C -0.223 4.223 7 C 0.582 3.418 8 O -0.573 6.573 9 N -0.699 5.699 10 C 0.167 3.833 11 C -0.141 4.141 12 C -0.138 4.138 13 C 0.205 3.795 14 N -0.615 5.615 15 C -0.256 4.256 16 H 0.069 0.931 17 C -0.054 4.054 18 N -0.939 5.939 19 Si 0.968 3.032 20 H -0.268 1.268 21 H -0.292 1.292 22 H -0.291 1.291 23 C 0.139 3.861 24 C -0.084 4.084 25 C 0.342 3.658 26 O -0.489 6.489 27 N -0.531 5.531 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.183 0.817 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.056 0.944 35 H 0.409 0.591 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.117 0.883 39 H 0.015 0.985 40 H 0.059 0.941 41 H 0.250 0.750 42 H 0.026 0.974 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.607 0.334 15.926 26.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.024 3.976 3 C -0.196 4.196 4 C -0.001 4.001 5 C -0.181 4.181 6 C -0.229 4.229 7 C 0.368 3.632 8 O -0.453 6.453 9 N -0.348 5.348 10 C 0.044 3.956 11 C -0.142 4.142 12 C -0.158 4.158 13 C 0.080 3.920 14 N -0.339 5.339 15 C -0.386 4.386 16 H 0.087 0.913 17 C -0.249 4.249 18 N -0.585 5.585 19 Si 0.796 3.204 20 H -0.193 1.193 21 H -0.219 1.219 22 H -0.217 1.217 23 C 0.014 3.986 24 C -0.123 4.123 25 C 0.163 3.837 26 O -0.299 6.299 27 N -0.251 5.251 28 H 0.112 0.888 29 H 0.095 0.905 30 H 0.127 0.873 31 H 0.200 0.800 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.075 0.925 35 H 0.244 0.756 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.135 0.865 39 H 0.033 0.967 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.044 0.956 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.100 0.900 46 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -20.505 -0.347 15.992 26.006 hybrid contribution 1.617 0.497 -0.566 1.784 sum -18.888 0.150 15.426 24.387 Atomic orbital electron populations 1.20934 0.85563 1.05110 1.04606 1.21888 0.98692 0.86769 0.90287 1.22173 0.92876 1.00870 1.03709 1.20584 0.94723 0.93939 0.90810 1.21006 0.99675 0.92997 1.04372 1.20825 0.93742 0.95242 1.13125 1.17979 0.86653 0.74995 0.83583 1.90785 1.70306 1.51853 1.32343 1.46067 1.07337 1.72933 1.08471 1.20323 0.79042 1.02269 0.93938 1.20571 1.03149 0.95518 0.94976 1.22977 0.97359 0.97885 0.97579 1.19422 0.97778 0.86913 0.87936 1.44415 1.22396 1.06788 1.60295 1.19536 1.01470 0.95064 1.22521 0.91291 1.25733 1.02719 0.97163 0.99266 1.70168 1.37018 1.05284 1.46075 0.85193 0.80314 0.77722 0.77155 1.19253 1.21901 1.21732 1.21156 0.91715 0.91817 0.93922 1.20711 1.01627 0.94207 0.95756 1.19122 0.86778 0.84520 0.93280 1.84655 1.76776 1.32754 1.35693 1.67123 1.08855 1.31984 1.17182 0.88763 0.90528 0.87338 0.79994 0.88695 0.87358 0.92544 0.75571 0.91166 0.91175 0.86525 0.96743 0.92287 0.94080 0.95627 0.92329 0.91673 0.90022 0.72016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.16 71.24 0.72 -0.15 16 2 C 0.16 2.59 6.78 42.58 0.29 2.88 16 3 C -0.18 -2.36 9.41 22.32 0.21 -2.15 16 4 C 0.01 0.13 5.95 -19.42 -0.12 0.02 16 5 C -0.12 -1.81 9.69 71.24 0.69 -1.12 16 6 C -0.22 -5.23 5.66 -19.91 -0.11 -5.35 16 7 C 0.58 15.85 5.42 86.69 0.47 16.32 16 8 O -0.57 -19.24 17.11 -4.00 -0.07 -19.31 16 9 N -0.70 -17.90 5.54 -470.01 -2.61 -20.51 16 10 C 0.17 4.67 5.66 85.63 0.48 5.15 16 11 C -0.14 -4.58 5.22 -15.13 -0.08 -4.66 16 12 C -0.14 -5.04 9.47 27.11 0.26 -4.78 16 13 C 0.20 9.76 5.23 85.42 0.45 10.20 16 14 N -0.61 -30.76 3.01 -703.03 -2.11 -32.88 16 15 C -0.26 -14.07 9.71 84.04 0.82 -13.25 16 16 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 17 C -0.05 -3.01 5.01 84.86 0.43 -2.58 16 18 N -0.94 -54.99 11.08 21.65 0.24 -54.75 16 19 Si 0.97 44.96 29.58 68.60 2.03 46.99 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 22 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 23 C 0.14 5.65 6.59 86.31 0.57 6.22 16 24 C -0.08 -2.80 5.95 29.71 0.18 -2.62 16 25 C 0.34 8.26 7.77 85.13 0.66 8.92 16 26 O -0.49 -11.35 13.01 -87.17 -1.13 -12.48 16 27 N -0.53 -11.98 10.28 -296.06 -3.04 -15.02 16 28 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.11 0.29 8.07 -2.39 -0.02 0.27 16 31 H 0.18 0.98 8.06 -2.91 -0.02 0.95 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.11 0.96 8.10 -2.38 -0.02 0.94 16 34 H 0.06 1.08 7.19 -2.39 -0.02 1.07 16 35 H 0.41 9.79 8.45 -92.71 -0.78 9.01 16 36 H 0.07 2.00 8.11 -2.38 -0.02 1.98 16 37 H 0.07 1.98 7.78 -2.39 -0.02 1.96 16 38 H 0.12 3.72 7.73 -2.91 -0.02 3.70 16 39 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.06 3.19 6.41 -2.39 -0.02 3.17 16 41 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 42 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.06 2.33 7.96 -2.39 -0.02 2.31 16 44 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 46 H 0.42 6.42 9.06 -74.05 -0.67 5.75 16 Total: -1.00 -73.49 384.70 -1.22 -74.71 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -0.44 Total: 20.22 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 5.91 Total: 13.03 kcal Atomic # 7 Polarization: -115.63 SS G_CDS: -7.52 Total: -123.15 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -1.20 Total: -31.79 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -73.49 -1.22 -74.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001016154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.726 kcal (2) G-P(sol) polarization free energy of solvation -73.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds