Wall clock time and date at job start Tue Mar 31 2020 16:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35682 * 116.99790 * 2 1 4 4 C 1.38895 * 119.62641 * 180.29766 * 3 2 1 5 5 C 1.39575 * 118.94883 * 180.22531 * 4 3 2 6 6 C 1.48159 * 120.89529 * 179.75637 * 5 4 3 7 7 O 1.21513 * 120.00197 * 179.72561 * 6 5 4 8 8 N 1.34780 * 119.99623 * 359.72791 * 6 5 4 9 9 C 1.46501 * 119.99942 * 179.97438 * 8 6 5 10 10 C 1.50696 * 109.47175 * 179.97438 * 9 8 6 11 11 C 1.29450 * 117.69740 * 95.00109 * 10 9 8 12 12 C 1.50318 * 123.65495 * 180.57514 * 11 10 9 13 13 N 1.47004 * 109.16539 * 349.01672 * 12 11 10 14 14 C 1.36943 * 121.37727 * 222.97044 * 13 12 11 15 15 H 1.08000 * 119.99761 * 155.98195 * 14 13 12 16 16 C 1.38806 * 120.00036 * 335.97653 * 14 13 12 17 17 N 1.31623 * 120.00139 * 344.49847 * 16 14 13 18 18 Si 1.86794 * 119.99900 * 164.49392 * 16 14 13 19 19 H 1.48502 * 109.46806 * 94.45976 * 18 16 14 20 20 H 1.48504 * 109.47168 * 214.45465 * 18 16 14 21 21 H 1.48497 * 109.47724 * 334.45813 * 18 16 14 22 22 C 1.47338 * 117.24789 * 42.95186 * 13 12 11 23 23 C 1.49970 * 117.69268 * 274.73808 * 10 9 8 24 24 C 1.39967 * 118.21498 * 359.49148 * 5 4 3 25 25 C 1.37984 * 119.13570 * 0.26475 * 24 5 4 26 26 C 1.50694 * 119.51063 * 179.97438 * 25 24 5 27 27 N 1.31907 * 120.97559 * 359.97438 * 25 24 5 28 28 H 1.09003 * 109.46767 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47320 * 299.99008 * 1 2 3 30 30 H 1.08993 * 109.47683 * 60.00268 * 1 2 3 31 31 H 1.07997 * 120.52546 * 359.97438 * 4 3 2 32 32 H 0.96994 * 120.00200 * 359.97438 * 8 6 5 33 33 H 1.09001 * 109.46899 * 59.99584 * 9 8 6 34 34 H 1.08996 * 109.46928 * 300.00181 * 9 8 6 35 35 H 1.08002 * 118.17313 * 0.59527 * 11 10 9 36 36 H 1.08999 * 109.52640 * 108.92644 * 12 11 10 37 37 H 1.08999 * 109.52200 * 229.11635 * 12 11 10 38 38 H 0.96999 * 119.99965 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.78144 * 57.80744 * 22 13 12 40 40 H 1.08997 * 109.78103 * 178.61431 * 22 13 12 41 41 H 1.09003 * 109.31537 * 281.57662 * 23 10 9 42 42 H 1.08993 * 109.31856 * 41.00262 * 23 10 9 43 43 H 1.07994 * 120.43413 * 180.24681 * 24 5 4 44 44 H 1.09004 * 109.47136 * 90.00727 * 26 25 24 45 45 H 1.09004 * 109.47294 * 210.00402 * 26 25 24 46 46 H 1.09004 * 109.47825 * 330.00738 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4324 1.2727 -0.0063 5 6 4.0513 2.5237 -0.0014 6 6 5.5281 2.6419 -0.0023 7 8 6.0499 3.7393 -0.0031 8 7 6.2929 1.5320 -0.0024 9 6 7.7532 1.6488 -0.0040 10 6 8.3672 0.2726 -0.0031 11 6 8.7025 -0.2374 -1.1447 12 6 9.3124 -1.6024 -1.3004 13 7 9.6939 -2.1145 0.0237 14 6 10.8898 -2.7507 0.2247 15 1 11.3298 -2.7743 1.2108 16 6 11.5364 -3.3653 -0.8387 17 7 10.8827 -3.6076 -1.9551 18 14 13.3343 -3.8482 -0.6855 19 1 13.4309 -5.2658 -0.2536 20 1 14.0046 -3.6847 -2.0005 21 1 13.9967 -2.9784 0.3193 22 6 8.7366 -1.9146 1.1257 23 6 8.5522 -0.4072 1.3208 24 6 3.2392 3.6637 -0.0013 25 6 1.8678 3.5116 -0.0004 26 6 0.9855 4.7333 0.0004 27 7 1.3177 2.3128 -0.0001 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 4.0230 0.3685 -0.0107 32 1 5.8764 0.6561 -0.0015 33 1 8.0753 2.1905 0.8854 34 1 8.0735 2.1894 -0.8945 35 1 8.5350 0.3508 -2.0349 36 1 8.5867 -2.2759 -1.7562 37 1 10.1970 -1.5360 -1.9339 38 1 11.3346 -4.0368 -2.6984 39 1 7.7809 -2.3731 0.8718 40 1 9.1286 -2.3596 2.0402 41 1 9.4324 0.0024 1.8165 42 1 7.6756 -0.2288 1.9434 43 1 3.6802 4.6495 -0.0016 44 1 0.7719 5.0279 -1.0272 45 1 0.0516 4.5067 0.5149 46 1 1.4945 5.5490 0.5138 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001078538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:00 Heat of formation + Delta-G solvation = 2.691419 kcal Electronic energy + Delta-G solvation = -27457.500098 eV Core-core repulsion = 23541.619124 eV Total energy + Delta-G solvation = -3915.880974 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.19451 -39.68673 -38.24898 -37.72684 -35.09756 -33.72110 -32.72759 -32.08788 -30.88680 -29.76957 -28.68670 -27.38536 -26.74630 -24.86184 -23.49727 -23.04113 -22.74385 -21.15152 -20.55081 -18.84123 -17.69980 -17.41316 -17.00245 -16.39781 -16.09826 -15.76992 -15.60933 -15.34740 -14.97864 -14.56497 -14.41778 -14.37369 -13.96904 -13.71044 -13.61117 -13.33075 -13.05799 -12.79920 -12.72574 -12.49518 -12.30860 -12.10495 -12.01242 -11.60545 -11.42626 -11.34580 -10.95061 -10.75511 -10.54310 -10.39465 -10.34522 -10.18529 -9.95844 -9.86172 -9.64178 -9.10568 -8.78387 -8.72077 -8.11994 -6.78342 -5.83217 -3.21982 0.38879 0.79577 2.45855 2.68034 2.71143 3.32901 3.35999 3.43277 3.45648 3.49607 3.76418 4.39444 4.46746 4.54749 4.69339 4.77150 4.95424 5.00215 5.03021 5.08753 5.17466 5.20902 5.29535 5.31222 5.36065 5.51193 5.54983 5.58826 5.74105 5.76408 5.87580 5.99410 6.02263 6.11837 6.29167 6.31608 6.46607 6.69144 6.82867 6.86633 7.11272 7.20358 7.26523 7.40773 7.46277 7.68710 7.78128 8.01724 8.34478 9.15943 9.78671 10.36382 11.27361 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019807 B = 0.002293 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.290655 B =12208.838583 C =13102.511840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.304 6.304 3 C 0.325 3.675 4 C -0.165 4.165 5 C -0.046 4.046 6 C 0.556 3.444 7 O -0.532 6.532 8 N -0.709 5.709 9 C 0.157 3.843 10 C -0.169 4.169 11 C -0.121 4.121 12 C 0.193 3.807 13 N -0.595 5.595 14 C -0.246 4.246 15 H 0.069 0.931 16 C -0.002 4.002 17 N -0.910 5.910 18 Si 0.905 3.095 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.279 1.279 22 C 0.144 3.856 23 C -0.090 4.090 24 C -0.155 4.155 25 C 0.163 3.837 26 C -0.104 4.104 27 N -0.528 5.528 28 H 0.098 0.902 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.148 0.852 32 H 0.403 0.597 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.042 0.958 37 H 0.094 0.906 38 H 0.254 0.746 39 H 0.023 0.977 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.150 0.850 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.950 12.706 3.442 24.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.210 6.210 3 C 0.145 3.855 4 C -0.187 4.187 5 C -0.056 4.056 6 C 0.341 3.659 7 O -0.409 6.409 8 N -0.360 5.360 9 C 0.035 3.965 10 C -0.170 4.170 11 C -0.142 4.142 12 C 0.068 3.932 13 N -0.318 5.318 14 C -0.375 4.375 15 H 0.087 0.913 16 C -0.199 4.199 17 N -0.555 5.555 18 Si 0.734 3.266 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.017 3.983 23 C -0.130 4.130 24 C -0.176 4.176 25 C 0.027 3.973 26 C -0.161 4.161 27 N -0.254 5.254 28 H 0.116 0.884 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.166 0.834 32 H 0.239 0.761 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.060 0.940 37 H 0.112 0.888 38 H 0.064 0.936 39 H 0.041 0.959 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.168 0.832 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.235 13.037 3.305 25.136 hybrid contribution 1.356 -0.612 -0.107 1.491 sum -19.879 12.425 3.198 23.660 Atomic orbital electron populations 1.22883 0.76971 1.03179 1.02433 1.86284 1.23103 1.23991 1.87664 1.19596 0.88939 0.84711 0.92210 1.21231 0.92507 0.98619 1.06300 1.20209 0.94013 0.93122 0.98271 1.18079 0.85744 0.84779 0.77299 1.90778 1.74145 1.26313 1.49669 1.46157 1.07731 1.08662 1.73461 1.20547 0.77569 0.96205 1.02214 1.20477 1.04993 0.95184 0.96330 1.23318 0.95420 0.99313 0.96108 1.19773 0.98671 0.86458 0.88285 1.44127 1.17298 1.65899 1.04501 1.19179 0.95350 1.27362 0.95632 0.91344 1.24990 0.98965 0.98571 0.97411 1.70007 1.34877 1.45515 1.05102 0.86241 0.85007 0.78285 0.77026 1.21484 1.21556 1.20465 1.20954 0.92997 0.91843 0.92503 1.20761 1.00127 0.98550 0.93518 1.21921 0.93210 0.99846 1.02640 1.20900 0.91645 0.91883 0.92863 1.20765 0.99088 0.92747 1.03535 1.66995 1.41220 0.98482 1.18689 0.88407 0.92252 0.92236 0.83445 0.76094 0.91172 0.91252 0.88704 0.94003 0.88796 0.93590 0.95889 0.92397 0.91667 0.92859 0.83199 0.89931 0.90257 0.90057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.38 101.05 1.05 1.35 16 2 O -0.30 -3.24 10.47 -18.75 -0.20 -3.44 16 3 C 0.32 3.67 7.49 -17.16 -0.13 3.54 16 4 C -0.17 -1.81 9.55 -38.84 -0.37 -2.18 16 5 C -0.05 -0.53 5.91 -104.68 -0.62 -1.15 16 6 C 0.56 7.57 7.80 -12.18 -0.10 7.48 16 7 O -0.53 -8.79 16.44 5.35 0.09 -8.70 16 8 N -0.71 -9.12 5.51 -62.33 -0.34 -9.46 16 9 C 0.16 2.26 5.66 -5.19 -0.03 2.23 16 10 C -0.17 -2.79 5.22 -100.99 -0.53 -3.32 16 11 C -0.12 -2.22 9.47 -35.78 -0.34 -2.56 16 12 C 0.19 4.45 5.23 -5.10 -0.03 4.43 16 13 N -0.60 -14.54 3.01 -173.68 -0.52 -15.06 16 14 C -0.25 -6.63 9.71 -15.06 -0.15 -6.78 16 15 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 16 C 0.00 -0.04 5.01 -17.43 -0.09 -0.13 16 17 N -0.91 -25.85 11.08 55.49 0.61 -25.23 16 18 Si 0.90 21.49 29.58 -169.99 -5.03 16.46 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.14 2.88 6.58 -3.53 -0.02 2.85 16 23 C -0.09 -1.52 5.94 -28.18 -0.17 -1.69 16 24 C -0.16 -1.64 9.30 -39.03 -0.36 -2.00 16 25 C 0.16 1.57 6.77 -82.66 -0.56 1.01 16 26 C -0.10 -0.63 10.16 36.00 0.37 -0.27 16 27 N -0.53 -5.72 9.09 -9.59 -0.09 -5.81 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 30 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 31 H 0.15 1.40 6.53 -52.49 -0.34 1.06 16 32 H 0.40 4.59 6.60 -40.82 -0.27 4.32 16 33 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 34 H 0.07 1.03 7.78 -51.93 -0.40 0.62 16 35 H 0.09 1.56 7.74 -52.49 -0.41 1.16 16 36 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 2.43 6.41 -51.93 -0.33 2.09 16 38 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 1.14 7.96 -51.93 -0.41 0.72 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.15 1.46 7.74 -52.49 -0.41 1.06 16 44 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 LS Contribution 383.01 15.07 5.77 5.77 Total: -1.00 -31.73 383.01 -8.53 -40.27 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.76 Total: 2.38 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -2.07 Total: 2.82 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.34 Total: -55.56 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.11 Total: -12.14 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.73 -8.53 -40.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001078538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.957 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds