Wall clock time and date at job start Tue Mar 31 2020 16:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35682 * 116.99790 * 2 1 4 4 C 1.38895 * 119.62641 * 180.29766 * 3 2 1 5 5 C 1.39575 * 118.94883 * 180.22531 * 4 3 2 6 6 C 1.48159 * 120.89529 * 179.75637 * 5 4 3 7 7 O 1.21513 * 120.00197 * 179.72561 * 6 5 4 8 8 N 1.34780 * 119.99623 * 359.72791 * 6 5 4 9 9 C 1.46501 * 119.99942 * 179.97438 * 8 6 5 10 10 C 1.50696 * 109.47175 * 179.97438 * 9 8 6 11 11 C 1.29450 * 117.69740 * 95.00109 * 10 9 8 12 12 C 1.50318 * 123.65495 * 180.57514 * 11 10 9 13 13 N 1.47004 * 109.16539 * 349.01672 * 12 11 10 14 14 C 1.36943 * 121.37727 * 222.97044 * 13 12 11 15 15 H 1.08000 * 119.99761 * 155.98195 * 14 13 12 16 16 C 1.38806 * 120.00036 * 335.97653 * 14 13 12 17 17 N 1.31623 * 120.00139 * 344.49847 * 16 14 13 18 18 Si 1.86794 * 119.99900 * 164.49392 * 16 14 13 19 19 H 1.48502 * 109.46806 * 94.45976 * 18 16 14 20 20 H 1.48504 * 109.47168 * 214.45465 * 18 16 14 21 21 H 1.48497 * 109.47724 * 334.45813 * 18 16 14 22 22 C 1.47338 * 117.24789 * 42.95186 * 13 12 11 23 23 C 1.49970 * 117.69268 * 274.73808 * 10 9 8 24 24 C 1.39967 * 118.21498 * 359.49148 * 5 4 3 25 25 C 1.37984 * 119.13570 * 0.26475 * 24 5 4 26 26 C 1.50694 * 119.51063 * 179.97438 * 25 24 5 27 27 N 1.31907 * 120.97559 * 359.97438 * 25 24 5 28 28 H 1.09003 * 109.46767 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47320 * 299.99008 * 1 2 3 30 30 H 1.08993 * 109.47683 * 60.00268 * 1 2 3 31 31 H 1.07997 * 120.52546 * 359.97438 * 4 3 2 32 32 H 0.96994 * 120.00200 * 359.97438 * 8 6 5 33 33 H 1.09001 * 109.46899 * 59.99584 * 9 8 6 34 34 H 1.08996 * 109.46928 * 300.00181 * 9 8 6 35 35 H 1.08002 * 118.17313 * 0.59527 * 11 10 9 36 36 H 1.08999 * 109.52640 * 108.92644 * 12 11 10 37 37 H 1.08999 * 109.52200 * 229.11635 * 12 11 10 38 38 H 0.96999 * 119.99965 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.78144 * 57.80744 * 22 13 12 40 40 H 1.08997 * 109.78103 * 178.61431 * 22 13 12 41 41 H 1.09003 * 109.31537 * 281.57662 * 23 10 9 42 42 H 1.08993 * 109.31856 * 41.00262 * 23 10 9 43 43 H 1.07994 * 120.43413 * 180.24681 * 24 5 4 44 44 H 1.09004 * 109.47136 * 90.00727 * 26 25 24 45 45 H 1.09004 * 109.47294 * 210.00402 * 26 25 24 46 46 H 1.09004 * 109.47825 * 330.00738 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4324 1.2727 -0.0063 5 6 4.0513 2.5237 -0.0014 6 6 5.5281 2.6419 -0.0023 7 8 6.0499 3.7393 -0.0031 8 7 6.2929 1.5320 -0.0024 9 6 7.7532 1.6488 -0.0040 10 6 8.3672 0.2726 -0.0031 11 6 8.7025 -0.2374 -1.1447 12 6 9.3124 -1.6024 -1.3004 13 7 9.6939 -2.1145 0.0237 14 6 10.8898 -2.7507 0.2247 15 1 11.3298 -2.7743 1.2108 16 6 11.5364 -3.3653 -0.8387 17 7 10.8827 -3.6076 -1.9551 18 14 13.3343 -3.8482 -0.6855 19 1 13.4309 -5.2658 -0.2536 20 1 14.0046 -3.6847 -2.0005 21 1 13.9967 -2.9784 0.3193 22 6 8.7366 -1.9146 1.1257 23 6 8.5522 -0.4072 1.3208 24 6 3.2392 3.6637 -0.0013 25 6 1.8678 3.5116 -0.0004 26 6 0.9855 4.7333 0.0004 27 7 1.3177 2.3128 -0.0001 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 4.0230 0.3685 -0.0107 32 1 5.8764 0.6561 -0.0015 33 1 8.0753 2.1905 0.8854 34 1 8.0735 2.1894 -0.8945 35 1 8.5350 0.3508 -2.0349 36 1 8.5867 -2.2759 -1.7562 37 1 10.1970 -1.5360 -1.9339 38 1 11.3346 -4.0368 -2.6984 39 1 7.7809 -2.3731 0.8718 40 1 9.1286 -2.3596 2.0402 41 1 9.4324 0.0024 1.8165 42 1 7.6756 -0.2288 1.9434 43 1 3.6802 4.6495 -0.0016 44 1 0.7719 5.0279 -1.0272 45 1 0.0516 4.5067 0.5149 46 1 1.4945 5.5490 0.5138 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001078538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:59 Heat of formation + Delta-G solvation = -18.567722 kcal Electronic energy + Delta-G solvation = -27458.421963 eV Core-core repulsion = 23541.619124 eV Total energy + Delta-G solvation = -3916.802839 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.02717 -40.73219 -39.41323 -38.87401 -36.51176 -34.88497 -34.06721 -32.84008 -32.52932 -31.43185 -29.32318 -28.78177 -27.53617 -26.33196 -24.79682 -24.25966 -23.80162 -22.79765 -21.54265 -19.76749 -19.42267 -18.31276 -17.96363 -17.38779 -17.15031 -17.03529 -16.79970 -16.65464 -16.35906 -15.76705 -15.46786 -15.31410 -15.18233 -15.09837 -15.00625 -14.51258 -14.27404 -13.95984 -13.66424 -13.37473 -13.31096 -13.27165 -13.06054 -12.93583 -12.80344 -12.66532 -12.58819 -12.24237 -12.11963 -12.03413 -11.71290 -11.55514 -11.26581 -11.03767 -10.81586 -10.68856 -10.21838 -9.67935 -9.54558 -8.75191 -7.88817 -5.29774 -0.47485 0.00879 1.12282 1.46548 1.48471 1.57954 1.70008 1.95125 2.23198 2.51104 2.65441 3.07632 3.28584 3.48418 3.61402 3.77982 3.85110 3.90846 3.95863 3.99433 4.38104 4.42110 4.42819 4.44137 4.51593 4.52966 4.64710 4.72906 4.76475 4.79226 4.83360 4.86158 4.91050 4.97583 5.04291 5.09888 5.20259 5.23733 5.35761 5.39430 5.48134 5.61442 5.75257 6.12898 6.14998 6.33721 6.35100 6.68293 6.96909 7.13395 7.83413 8.36910 9.19862 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019807 B = 0.002293 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.290655 B =12208.838583 C =13102.511840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.317 6.317 3 C 0.313 3.687 4 C -0.169 4.169 5 C -0.055 4.055 6 C 0.560 3.440 7 O -0.563 6.563 8 N -0.702 5.702 9 C 0.166 3.834 10 C -0.141 4.141 11 C -0.139 4.139 12 C 0.204 3.796 13 N -0.615 5.615 14 C -0.256 4.256 15 H 0.070 0.930 16 C -0.055 4.055 17 N -0.939 5.939 18 Si 0.967 3.033 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.271 1.271 22 C 0.138 3.862 23 C -0.085 4.085 24 C -0.159 4.159 25 C 0.163 3.837 26 C -0.102 4.102 27 N -0.534 5.534 28 H 0.121 0.879 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.158 0.842 32 H 0.412 0.588 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.114 0.886 36 H 0.015 0.985 37 H 0.058 0.942 38 H 0.250 0.750 39 H 0.028 0.972 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.157 0.843 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.268 14.093 4.643 26.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.224 6.224 3 C 0.134 3.866 4 C -0.190 4.190 5 C -0.066 4.066 6 C 0.347 3.653 7 O -0.442 6.442 8 N -0.353 5.353 9 C 0.044 3.956 10 C -0.142 4.142 11 C -0.159 4.159 12 C 0.079 3.921 13 N -0.339 5.339 14 C -0.386 4.386 15 H 0.088 0.912 16 C -0.250 4.250 17 N -0.586 5.586 18 Si 0.795 3.205 19 H -0.213 1.213 20 H -0.220 1.220 21 H -0.196 1.196 22 C 0.013 3.987 23 C -0.123 4.123 24 C -0.180 4.180 25 C 0.027 3.973 26 C -0.159 4.159 27 N -0.260 5.260 28 H 0.139 0.861 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.176 0.824 32 H 0.249 0.751 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.132 0.868 36 H 0.032 0.968 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.174 0.826 44 H 0.113 0.887 45 H 0.103 0.897 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.586 14.415 4.534 27.174 hybrid contribution 1.642 -1.036 -0.408 1.984 sum -20.943 13.378 4.126 25.192 Atomic orbital electron populations 1.23097 0.75459 1.04775 1.02506 1.86265 1.24686 1.23851 1.87583 1.19777 0.89241 0.85138 0.92459 1.21304 0.92700 0.98721 1.06277 1.20076 0.92873 0.93962 0.99686 1.18268 0.86448 0.84205 0.76351 1.90763 1.74843 1.27385 1.51227 1.45990 1.07007 1.09134 1.73172 1.20350 0.78332 0.94353 1.02600 1.20587 1.02521 0.95610 0.95479 1.22980 0.97432 0.97629 0.97902 1.19415 0.96764 0.88636 0.87309 1.44411 1.17647 1.66004 1.05861 1.19508 0.96531 1.26849 0.95685 0.91196 1.25733 1.02597 0.99295 0.97339 1.70165 1.36129 1.46671 1.05661 0.85260 0.80553 0.77911 0.76735 1.21285 1.21975 1.19567 1.21146 0.92152 0.94268 0.91173 1.20701 1.01694 0.95841 0.94108 1.22095 0.93644 0.99833 1.02447 1.21440 0.91844 0.92568 0.91487 1.20880 0.98795 0.91594 1.04639 1.67083 1.41370 0.98782 1.18770 0.86134 0.92084 0.92202 0.82447 0.75073 0.90542 0.91279 0.86806 0.96776 0.92425 0.94128 0.95442 0.92236 0.91665 0.89384 0.82568 0.88672 0.89707 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.38 113.37 1.18 1.66 16 2 O -0.32 -6.38 10.47 -90.00 -0.94 -7.32 16 3 C 0.31 6.68 7.49 84.80 0.63 7.32 16 4 C -0.17 -3.47 9.55 22.75 0.22 -3.25 16 5 C -0.06 -1.22 5.91 -19.90 -0.12 -1.34 16 6 C 0.56 14.36 7.80 86.88 0.68 15.04 16 7 O -0.56 -17.80 16.44 -3.76 -0.06 -17.86 16 8 N -0.70 -16.53 5.51 -469.41 -2.58 -19.11 16 9 C 0.17 4.41 5.66 85.63 0.48 4.89 16 10 C -0.14 -4.40 5.22 -15.14 -0.08 -4.48 16 11 C -0.14 -5.05 9.47 27.11 0.26 -4.79 16 12 C 0.20 9.69 5.23 85.42 0.45 10.13 16 13 N -0.62 -30.37 3.01 -703.41 -2.12 -32.49 16 14 C -0.26 -13.94 9.71 84.03 0.82 -13.12 16 15 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 16 C -0.05 -3.05 5.01 84.86 0.42 -2.63 16 17 N -0.94 -55.12 11.08 21.65 0.24 -54.88 16 18 Si 0.97 44.82 29.58 68.60 2.03 46.85 16 19 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 C 0.14 5.39 6.58 86.25 0.57 5.96 16 23 C -0.08 -2.65 5.94 29.65 0.18 -2.47 16 24 C -0.16 -3.11 9.30 22.63 0.21 -2.90 16 25 C 0.16 2.84 6.77 42.49 0.29 3.12 16 26 C -0.10 -0.99 10.16 71.23 0.72 -0.26 16 27 N -0.53 -10.75 9.09 -297.17 -2.70 -13.45 16 28 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 30 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 31 H 0.16 2.76 6.53 -2.91 -0.02 2.74 16 32 H 0.41 8.43 6.60 -92.71 -0.61 7.82 16 33 H 0.08 2.01 8.11 -2.39 -0.02 1.99 16 34 H 0.07 1.90 7.78 -2.39 -0.02 1.88 16 35 H 0.11 3.67 7.74 -2.91 -0.02 3.65 16 36 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 3.12 6.41 -2.39 -0.02 3.11 16 38 H 0.25 14.22 8.31 -92.71 -0.77 13.44 16 39 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.06 2.27 7.96 -2.39 -0.02 2.25 16 41 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.16 2.80 7.74 -2.91 -0.02 2.78 16 44 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 46 H 0.10 0.64 8.07 -2.38 -0.02 0.62 16 Total: -1.00 -69.25 383.01 1.15 -68.10 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.38 Total: 17.30 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 6.90 Total: 12.87 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -7.16 Total: -119.94 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -1.00 Total: -25.18 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -69.25 1.15 -68.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001078538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.532 kcal (2) G-P(sol) polarization free energy of solvation -69.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds