Wall clock time and date at job start Tue Mar 31 2020 16:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35421 * 117.00357 * 2 1 4 4 N 1.32238 * 119.79600 * 359.97438 * 3 2 1 5 5 C 1.31890 * 121.79784 * 179.97438 * 4 3 2 6 6 C 1.50696 * 119.40512 * 180.02562 * 5 4 3 7 7 C 1.38357 * 121.18461 * 0.27662 * 5 4 3 8 8 C 1.38340 * 119.45546 * 359.45694 * 7 5 4 9 9 C 1.39982 * 118.34957 * 0.52955 * 8 7 5 10 10 C 1.47526 * 120.59427 * 179.71271 * 9 8 7 11 11 O 1.21597 * 120.00229 * 180.02562 * 10 9 8 12 12 N 1.34777 * 120.00228 * 0.02562 * 10 9 8 13 13 C 1.46494 * 120.00069 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.47317 * 179.97438 * 13 12 10 15 15 C 1.29460 * 117.69338 * 95.00031 * 14 13 12 16 16 C 1.50327 * 123.65437 * 180.86477 * 15 14 13 17 17 N 1.47006 * 109.15930 * 349.01680 * 16 15 14 18 18 C 1.36937 * 121.37172 * 222.96947 * 17 16 15 19 19 H 1.08001 * 120.00023 * 155.98400 * 18 17 16 20 20 C 1.38813 * 120.00496 * 335.98178 * 18 17 16 21 21 N 1.31621 * 119.99273 * 344.49486 * 20 18 17 22 22 Si 1.86798 * 120.00339 * 164.49639 * 20 18 17 23 23 H 1.48501 * 109.46948 * 94.45587 * 22 20 18 24 24 H 1.48503 * 109.46985 * 214.45649 * 22 20 18 25 25 H 1.48494 * 109.46996 * 334.45450 * 22 20 18 26 26 C 1.47336 * 117.25376 * 42.95358 * 17 16 15 27 27 C 1.49961 * 117.69776 * 274.74342 * 14 13 12 28 28 H 1.08995 * 109.47313 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47317 * 300.00269 * 1 2 3 30 30 H 1.09005 * 109.46798 * 60.00539 * 1 2 3 31 31 H 1.09002 * 109.47102 * 89.99866 * 6 5 4 32 32 H 1.08995 * 109.47416 * 330.00134 * 6 5 4 33 33 H 1.09003 * 109.47218 * 209.99886 * 6 5 4 34 34 H 1.07992 * 120.27135 * 179.72038 * 7 5 4 35 35 H 1.08005 * 120.81985 * 180.23101 * 8 7 5 36 36 H 0.96996 * 119.99578 * 0.02562 * 12 10 9 37 37 H 1.09007 * 109.47316 * 300.00113 * 13 12 10 38 38 H 1.09000 * 109.47435 * 59.99867 * 13 12 10 39 39 H 1.07997 * 118.17258 * 0.88208 * 15 14 13 40 40 H 1.08990 * 109.52419 * 108.92527 * 16 15 14 41 41 H 1.09003 * 109.51860 * 229.11595 * 16 15 14 42 42 H 0.97002 * 119.99755 * 179.97438 * 21 20 18 43 43 H 1.09004 * 109.78143 * 57.80257 * 26 17 16 44 44 H 1.09002 * 109.78085 * 178.61089 * 26 17 16 45 45 H 1.09003 * 109.31351 * 281.28332 * 27 14 13 46 46 H 1.08994 * 109.31936 * 40.71154 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2066 0.0000 4 7 1.3198 2.3131 -0.0005 5 6 1.8772 3.5084 0.0000 6 6 1.0001 4.7338 -0.0001 7 6 3.2527 3.6574 -0.0047 8 6 4.0588 2.5331 0.0015 9 6 3.4450 1.2751 0.0009 10 6 4.2570 0.0434 0.0010 11 8 3.7125 -1.0438 0.0000 12 7 5.6024 0.1232 0.0021 13 6 6.4087 -1.0999 0.0016 14 6 7.8714 -0.7373 0.0024 15 6 8.4790 -0.6903 1.1446 16 6 9.9287 -0.3257 1.3027 17 7 10.5676 -0.3028 -0.0211 18 6 11.8073 -0.8478 -0.2240 19 1 12.0986 -1.1746 -1.2113 20 6 12.6897 -0.9804 0.8393 21 7 12.4752 -0.3218 1.9585 22 14 14.1816 -2.0934 0.6818 23 1 15.3553 -1.2905 0.2540 24 1 14.4671 -2.7271 1.9942 25 1 13.9084 -3.1475 -0.3278 26 6 9.8188 0.3306 -1.1207 27 6 8.5221 -0.4621 -1.3204 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.7883 5.0290 1.0276 32 1 0.0651 4.5114 -0.5142 33 1 1.5126 5.5474 -0.5135 34 1 3.6935 4.6433 -0.0088 35 1 5.1350 2.6239 0.0018 36 1 6.0367 0.9905 0.0032 37 1 6.1790 -1.6869 0.8908 38 1 6.1804 -1.6852 -0.8891 39 1 7.9128 -0.9265 2.0334 40 1 10.0086 0.6591 1.7628 41 1 10.4235 -1.0646 1.9331 42 1 13.0916 -0.4146 2.7017 43 1 9.5877 1.3640 -0.8624 44 1 10.4115 0.3020 -2.0351 45 1 8.7456 -1.4070 -1.8157 46 1 7.8405 0.1162 -1.9441 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001229685.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:04 Heat of formation + Delta-G solvation = 4.279783 kcal Electronic energy + Delta-G solvation = -27668.899084 eV Core-core repulsion = 23753.086987 eV Total energy + Delta-G solvation = -3915.812097 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.17923 -39.25671 -38.28136 -37.69855 -34.91887 -33.65249 -32.67713 -32.06507 -30.85737 -29.74718 -28.80866 -27.55165 -26.49352 -24.33189 -23.18746 -23.17750 -22.71765 -21.17078 -20.62724 -18.62694 -17.99803 -17.55179 -17.13675 -16.35564 -15.76685 -15.55908 -15.25162 -14.93507 -14.80758 -14.61851 -14.40496 -14.35468 -13.95492 -13.65288 -13.53050 -13.16219 -13.00532 -12.92440 -12.66698 -12.57813 -12.24752 -12.04267 -11.96462 -11.58227 -11.37346 -11.31951 -10.93610 -10.74487 -10.42256 -10.33339 -10.30178 -10.19463 -9.85480 -9.78330 -9.59559 -8.98635 -8.70619 -8.67184 -8.08202 -6.77370 -5.82529 -3.21159 0.39975 0.94771 2.56233 2.79841 2.82169 3.36341 3.43747 3.45742 3.46429 3.59249 3.82546 4.30451 4.47441 4.54374 4.67318 4.84089 5.00848 5.05877 5.08786 5.12898 5.15450 5.18187 5.34380 5.38884 5.39347 5.52472 5.55405 5.57988 5.70525 5.83201 5.95781 6.04238 6.05836 6.15407 6.30654 6.45087 6.53478 6.70744 6.84120 6.97959 7.14317 7.23368 7.30218 7.44334 7.61846 7.70792 7.80048 8.29050 8.35333 9.16802 9.79573 10.37332 11.28007 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.023892 B = 0.002245 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.680381 B =12467.551752 C =13116.226019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.270 6.270 3 C 0.376 3.624 4 N -0.548 5.548 5 C 0.190 3.810 6 C -0.108 4.108 7 C -0.219 4.219 8 C -0.004 4.004 9 C -0.214 4.214 10 C 0.560 3.440 11 O -0.522 6.522 12 N -0.718 5.718 13 C 0.159 3.841 14 C -0.167 4.167 15 C -0.124 4.124 16 C 0.194 3.806 17 N -0.595 5.595 18 C -0.246 4.246 19 H 0.069 0.931 20 C -0.002 4.002 21 N -0.910 5.910 22 Si 0.904 3.096 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.144 3.856 27 C -0.090 4.090 28 H 0.098 0.902 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.398 0.602 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.041 0.959 41 H 0.093 0.907 42 H 0.254 0.746 43 H 0.023 0.977 44 H 0.057 0.943 45 H 0.065 0.935 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.851 9.509 -3.468 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.173 6.173 3 C 0.196 3.804 4 N -0.273 5.273 5 C 0.053 3.947 6 C -0.166 4.166 7 C -0.239 4.239 8 C -0.030 4.030 9 C -0.220 4.220 10 C 0.346 3.654 11 O -0.399 6.399 12 N -0.370 5.370 13 C 0.037 3.963 14 C -0.167 4.167 15 C -0.145 4.145 16 C 0.069 3.931 17 N -0.318 5.318 18 C -0.375 4.375 19 H 0.086 0.914 20 C -0.199 4.199 21 N -0.555 5.555 22 Si 0.734 3.266 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.018 3.982 27 C -0.129 4.129 28 H 0.116 0.884 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.233 0.767 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.059 0.941 41 H 0.111 0.889 42 H 0.064 0.936 43 H 0.041 0.959 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.918 8.291 -3.334 25.533 hybrid contribution 1.632 0.023 0.107 1.636 sum -22.286 8.315 -3.226 24.004 Atomic orbital electron populations 1.22947 0.77631 1.03279 1.02186 1.86550 1.22242 1.22942 1.85611 1.19800 0.88100 0.84915 0.87597 1.67276 1.40320 0.98219 1.21511 1.21183 0.92202 0.91951 0.89375 1.20824 0.99363 0.92776 1.03595 1.21750 0.93786 1.00070 1.08335 1.21695 1.00823 0.90456 0.90006 1.20052 0.91585 0.95140 1.15222 1.17780 0.82100 0.88215 0.77282 1.90823 1.71703 1.28375 1.49030 1.46062 1.05309 1.10479 1.75194 1.20458 0.88101 0.85746 1.01985 1.20503 0.93086 1.06935 0.96225 1.23300 0.99764 0.95260 0.96146 1.19763 0.85109 1.00019 0.88222 1.44130 1.16593 1.66419 1.04706 1.19180 0.89946 1.32855 0.95514 0.91367 1.24989 0.97809 0.99767 0.97378 1.70008 1.38263 1.42297 1.04951 0.86242 0.82693 0.80603 0.77036 1.21496 1.21557 1.20464 1.20990 0.91197 0.93579 0.92483 1.20792 0.97804 1.00755 0.93588 0.88370 0.92306 0.92324 0.89752 0.90210 0.90009 0.83789 0.83506 0.76707 0.91547 0.91481 0.88741 0.94098 0.88866 0.93609 0.95904 0.92460 0.91668 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.38 101.05 1.05 1.38 16 2 O -0.27 -3.79 8.58 -39.72 -0.34 -4.13 16 3 C 0.38 5.01 7.51 -16.61 -0.12 4.88 16 4 N -0.55 -6.24 9.11 -9.21 -0.08 -6.32 16 5 C 0.19 1.69 6.78 -82.53 -0.56 1.13 16 6 C -0.11 -0.57 10.16 36.00 0.37 -0.20 16 7 C -0.22 -1.75 9.71 -39.50 -0.38 -2.13 16 8 C 0.00 -0.04 9.64 -38.89 -0.37 -0.41 16 9 C -0.21 -2.74 5.90 -104.69 -0.62 -3.36 16 10 C 0.56 8.45 7.77 -12.47 -0.10 8.36 16 11 O -0.52 -9.73 15.19 -16.49 -0.25 -9.98 16 12 N -0.72 -9.71 5.50 -62.53 -0.34 -10.05 16 13 C 0.16 2.43 5.66 -5.20 -0.03 2.40 16 14 C -0.17 -2.81 5.22 -101.00 -0.53 -3.34 16 15 C -0.12 -2.31 9.47 -35.78 -0.34 -2.65 16 16 C 0.19 4.49 5.23 -5.10 -0.03 4.46 16 17 N -0.60 -14.56 3.01 -173.56 -0.52 -15.09 16 18 C -0.25 -6.63 9.71 -15.06 -0.15 -6.78 16 19 H 0.07 1.81 7.88 -52.49 -0.41 1.39 16 20 C 0.00 -0.04 5.01 -17.43 -0.09 -0.13 16 21 N -0.91 -25.86 11.08 55.49 0.61 -25.25 16 22 Si 0.90 21.53 29.58 -169.99 -5.03 16.50 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.14 2.88 6.59 -3.43 -0.02 2.86 16 27 C -0.09 -1.54 5.95 -28.09 -0.17 -1.70 16 28 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 30 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.27 8.07 -51.93 -0.42 -0.14 16 34 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.15 1.05 6.52 -52.48 -0.34 0.71 16 36 H 0.40 4.53 6.56 -40.82 -0.27 4.27 16 37 H 0.07 1.05 7.78 -51.93 -0.40 0.65 16 38 H 0.07 1.05 8.11 -51.93 -0.42 0.63 16 39 H 0.09 1.60 7.73 -52.49 -0.41 1.19 16 40 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.09 2.42 6.41 -51.93 -0.33 2.09 16 42 H 0.25 6.99 8.31 -40.82 -0.34 6.66 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -33.29 380.65 -9.08 -42.38 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.78 Total: 1.45 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -2.09 Total: 4.75 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.33 Total: -56.71 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.59 Total: -14.10 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.29 -9.08 -42.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001229685.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.655 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds