Wall clock time and date at job start Tue Mar 31 2020 16:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35421 * 117.00357 * 2 1 4 4 N 1.32238 * 119.79600 * 359.97438 * 3 2 1 5 5 C 1.31890 * 121.79784 * 179.97438 * 4 3 2 6 6 C 1.50696 * 119.40512 * 180.02562 * 5 4 3 7 7 C 1.38357 * 121.18461 * 0.27662 * 5 4 3 8 8 C 1.38340 * 119.45546 * 359.45694 * 7 5 4 9 9 C 1.39982 * 118.34957 * 0.52955 * 8 7 5 10 10 C 1.47526 * 120.59427 * 179.71271 * 9 8 7 11 11 O 1.21597 * 120.00229 * 180.02562 * 10 9 8 12 12 N 1.34777 * 120.00228 * 0.02562 * 10 9 8 13 13 C 1.46494 * 120.00069 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.47317 * 179.97438 * 13 12 10 15 15 C 1.29460 * 117.69338 * 95.00031 * 14 13 12 16 16 C 1.50327 * 123.65437 * 180.86477 * 15 14 13 17 17 N 1.47006 * 109.15930 * 349.01680 * 16 15 14 18 18 C 1.36937 * 121.37172 * 222.96947 * 17 16 15 19 19 H 1.08001 * 120.00023 * 155.98400 * 18 17 16 20 20 C 1.38813 * 120.00496 * 335.98178 * 18 17 16 21 21 N 1.31621 * 119.99273 * 344.49486 * 20 18 17 22 22 Si 1.86798 * 120.00339 * 164.49639 * 20 18 17 23 23 H 1.48501 * 109.46948 * 94.45587 * 22 20 18 24 24 H 1.48503 * 109.46985 * 214.45649 * 22 20 18 25 25 H 1.48494 * 109.46996 * 334.45450 * 22 20 18 26 26 C 1.47336 * 117.25376 * 42.95358 * 17 16 15 27 27 C 1.49961 * 117.69776 * 274.74342 * 14 13 12 28 28 H 1.08995 * 109.47313 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47317 * 300.00269 * 1 2 3 30 30 H 1.09005 * 109.46798 * 60.00539 * 1 2 3 31 31 H 1.09002 * 109.47102 * 89.99866 * 6 5 4 32 32 H 1.08995 * 109.47416 * 330.00134 * 6 5 4 33 33 H 1.09003 * 109.47218 * 209.99886 * 6 5 4 34 34 H 1.07992 * 120.27135 * 179.72038 * 7 5 4 35 35 H 1.08005 * 120.81985 * 180.23101 * 8 7 5 36 36 H 0.96996 * 119.99578 * 0.02562 * 12 10 9 37 37 H 1.09007 * 109.47316 * 300.00113 * 13 12 10 38 38 H 1.09000 * 109.47435 * 59.99867 * 13 12 10 39 39 H 1.07997 * 118.17258 * 0.88208 * 15 14 13 40 40 H 1.08990 * 109.52419 * 108.92527 * 16 15 14 41 41 H 1.09003 * 109.51860 * 229.11595 * 16 15 14 42 42 H 0.97002 * 119.99755 * 179.97438 * 21 20 18 43 43 H 1.09004 * 109.78143 * 57.80257 * 26 17 16 44 44 H 1.09002 * 109.78085 * 178.61089 * 26 17 16 45 45 H 1.09003 * 109.31351 * 281.28332 * 27 14 13 46 46 H 1.08994 * 109.31936 * 40.71154 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2066 0.0000 4 7 1.3198 2.3131 -0.0005 5 6 1.8772 3.5084 0.0000 6 6 1.0001 4.7338 -0.0001 7 6 3.2527 3.6574 -0.0047 8 6 4.0588 2.5331 0.0015 9 6 3.4450 1.2751 0.0009 10 6 4.2570 0.0434 0.0010 11 8 3.7125 -1.0438 0.0000 12 7 5.6024 0.1232 0.0021 13 6 6.4087 -1.0999 0.0016 14 6 7.8714 -0.7373 0.0024 15 6 8.4790 -0.6903 1.1446 16 6 9.9287 -0.3257 1.3027 17 7 10.5676 -0.3028 -0.0211 18 6 11.8073 -0.8478 -0.2240 19 1 12.0986 -1.1746 -1.2113 20 6 12.6897 -0.9804 0.8393 21 7 12.4752 -0.3218 1.9585 22 14 14.1816 -2.0934 0.6818 23 1 15.3553 -1.2905 0.2540 24 1 14.4671 -2.7271 1.9942 25 1 13.9084 -3.1475 -0.3278 26 6 9.8188 0.3306 -1.1207 27 6 8.5221 -0.4621 -1.3204 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.7883 5.0290 1.0276 32 1 0.0651 4.5114 -0.5142 33 1 1.5126 5.5474 -0.5135 34 1 3.6935 4.6433 -0.0088 35 1 5.1350 2.6239 0.0018 36 1 6.0367 0.9905 0.0032 37 1 6.1790 -1.6869 0.8908 38 1 6.1804 -1.6852 -0.8891 39 1 7.9128 -0.9265 2.0334 40 1 10.0086 0.6591 1.7628 41 1 10.4235 -1.0646 1.9331 42 1 13.0916 -0.4146 2.7017 43 1 9.5877 1.3640 -0.8624 44 1 10.4115 0.3020 -2.0351 45 1 8.7456 -1.4070 -1.8157 46 1 7.8405 0.1162 -1.9441 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001229685.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:03 Heat of formation + Delta-G solvation = -17.712518 kcal Electronic energy + Delta-G solvation = -27669.852742 eV Core-core repulsion = 23753.086987 eV Total energy + Delta-G solvation = -3916.765755 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.01756 -40.41605 -39.23961 -39.09482 -36.40058 -34.79414 -34.00356 -32.78157 -32.49413 -31.40858 -29.54051 -28.74817 -27.66222 -25.88616 -24.44820 -24.01231 -23.89945 -22.81029 -21.70158 -19.64832 -19.38126 -18.84573 -17.98607 -17.37994 -17.21326 -16.98892 -16.64040 -16.14532 -15.97282 -15.51679 -15.45073 -15.27006 -15.20204 -15.07364 -15.00633 -14.47513 -14.13867 -13.85103 -13.64722 -13.54162 -13.28882 -13.26121 -13.03087 -12.90005 -12.79386 -12.69665 -12.57797 -12.22979 -12.09885 -12.04564 -11.70053 -11.31486 -11.23058 -10.98380 -10.71708 -10.66801 -10.15013 -9.65430 -9.48354 -8.73849 -7.88012 -5.28596 -0.39925 0.21041 1.16547 1.46788 1.49030 1.58264 1.81488 2.04597 2.32531 2.51739 2.73117 3.11828 3.29456 3.61439 3.68355 3.72440 3.86395 3.91701 3.97777 4.21486 4.32528 4.37134 4.37561 4.44430 4.54986 4.66208 4.66853 4.71466 4.75204 4.81359 4.85044 4.92639 4.93583 4.99968 5.11475 5.15591 5.22911 5.34058 5.41901 5.46755 5.49311 5.62469 5.77473 6.16636 6.17794 6.34827 6.50160 6.73225 7.14445 7.19223 7.84692 8.38016 9.20605 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.023892 B = 0.002245 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.680381 B =12467.551752 C =13116.226019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.301 6.301 3 C 0.355 3.645 4 N -0.560 5.560 5 C 0.185 3.815 6 C -0.106 4.106 7 C -0.210 4.210 8 C 0.000 4.000 9 C -0.242 4.242 10 C 0.561 3.439 11 O -0.566 6.566 12 N -0.707 5.707 13 C 0.169 3.831 14 C -0.138 4.138 15 C -0.140 4.140 16 C 0.205 3.795 17 N -0.615 5.615 18 C -0.255 4.255 19 H 0.070 0.930 20 C -0.054 4.054 21 N -0.939 5.939 22 Si 0.966 3.034 23 H -0.285 1.285 24 H -0.294 1.294 25 H -0.272 1.272 26 C 0.139 3.861 27 C -0.084 4.084 28 H 0.113 0.887 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.182 0.818 35 H 0.171 0.829 36 H 0.410 0.590 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.111 0.889 40 H 0.017 0.983 41 H 0.056 0.944 42 H 0.249 0.751 43 H 0.032 0.968 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.916 11.303 -4.673 26.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.206 6.206 3 C 0.175 3.825 4 N -0.286 5.286 5 C 0.047 3.953 6 C -0.163 4.163 7 C -0.229 4.229 8 C -0.025 4.025 9 C -0.248 4.248 10 C 0.349 3.651 11 O -0.446 6.446 12 N -0.360 5.360 13 C 0.046 3.954 14 C -0.139 4.139 15 C -0.161 4.161 16 C 0.080 3.920 17 N -0.340 5.340 18 C -0.385 4.385 19 H 0.088 0.912 20 C -0.249 4.249 21 N -0.586 5.586 22 Si 0.794 3.206 23 H -0.212 1.212 24 H -0.220 1.220 25 H -0.197 1.197 26 C 0.014 3.986 27 C -0.123 4.123 28 H 0.131 0.869 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.199 0.801 35 H 0.188 0.812 36 H 0.248 0.752 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.129 0.871 40 H 0.035 0.965 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -24.993 10.122 -4.566 27.349 hybrid contribution 1.869 -0.399 0.413 1.956 sum -23.124 9.723 -4.153 25.426 Atomic orbital electron populations 1.23107 0.76070 1.04423 1.02555 1.86499 1.24084 1.24106 1.85945 1.20037 0.88569 0.85266 0.88593 1.67345 1.40504 0.98629 1.22108 1.21951 0.93544 0.92141 0.87647 1.20956 0.98924 0.91723 1.04688 1.22187 0.93275 1.01212 1.06250 1.22006 1.02140 0.89522 0.88830 1.19994 0.91368 0.95331 1.18077 1.18129 0.82271 0.88525 0.76172 1.90793 1.72480 1.30158 1.51182 1.45846 1.04880 1.10466 1.74773 1.20233 0.86840 0.86425 1.01882 1.20577 0.93752 1.04027 0.95536 1.22964 0.97350 0.97954 0.97783 1.19405 0.87449 0.97837 0.87298 1.44410 1.16462 1.67016 1.06064 1.19503 0.90988 1.32492 0.95553 0.91250 1.25717 1.00602 1.01280 0.97322 1.70160 1.39181 1.43730 1.05489 0.85277 0.79645 0.78948 0.76695 1.21201 1.22030 1.19686 1.21185 0.92059 0.94213 0.91139 1.20734 0.96889 1.00684 0.94001 0.86913 0.91935 0.91850 0.88500 0.90432 0.87383 0.80062 0.81213 0.75224 0.92106 0.91353 0.87094 0.96519 0.92567 0.94140 0.94981 0.92260 0.91934 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.38 113.37 1.18 1.81 16 2 O -0.30 -8.67 8.58 -66.34 -0.57 -9.24 16 3 C 0.36 9.37 7.51 85.13 0.64 10.01 16 4 N -0.56 -12.12 9.11 -296.06 -2.70 -14.82 16 5 C 0.18 2.78 6.78 42.58 0.29 3.07 16 6 C -0.11 -0.75 10.16 71.23 0.72 -0.03 16 7 C -0.21 -2.58 9.71 22.32 0.22 -2.37 16 8 C 0.00 0.01 9.64 22.72 0.22 0.23 16 9 C -0.24 -5.96 5.90 -19.91 -0.12 -6.08 16 10 C 0.56 16.58 7.77 86.69 0.67 17.25 16 11 O -0.57 -21.33 15.19 16.79 0.26 -21.08 16 12 N -0.71 -17.83 5.50 -470.02 -2.59 -20.42 16 13 C 0.17 4.87 5.66 85.63 0.48 5.35 16 14 C -0.14 -4.42 5.22 -15.15 -0.08 -4.49 16 15 C -0.14 -5.15 9.47 27.10 0.26 -4.90 16 16 C 0.21 9.72 5.23 85.42 0.45 10.17 16 17 N -0.62 -30.21 3.01 -703.02 -2.11 -32.33 16 18 C -0.26 -13.88 9.71 84.03 0.82 -13.06 16 19 H 0.07 3.67 7.88 -2.91 -0.02 3.64 16 20 C -0.05 -3.02 5.01 84.86 0.42 -2.59 16 21 N -0.94 -54.83 11.08 21.65 0.24 -54.59 16 22 Si 0.97 44.80 29.58 68.60 2.03 46.83 16 23 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 26 C 0.14 5.37 6.59 86.32 0.57 5.94 16 27 C -0.08 -2.66 5.95 29.71 0.18 -2.48 16 28 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 30 H 0.06 1.11 8.10 -2.38 -0.02 1.09 16 31 H 0.10 0.50 8.14 -2.39 -0.02 0.49 16 32 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.11 0.23 8.07 -2.39 -0.02 0.21 16 34 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 35 H 0.17 1.81 6.52 -2.91 -0.02 1.79 16 36 H 0.41 8.22 6.56 -92.71 -0.61 7.61 16 37 H 0.06 1.86 7.78 -2.38 -0.02 1.84 16 38 H 0.07 2.00 8.11 -2.39 -0.02 1.99 16 39 H 0.11 3.69 7.73 -2.91 -0.02 3.67 16 40 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 3.05 6.41 -2.39 -0.02 3.03 16 42 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 43 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 44 H 0.06 2.23 7.96 -2.39 -0.02 2.21 16 45 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -74.99 380.65 1.86 -73.13 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.39 Total: 14.69 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: 6.92 Total: 17.82 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -7.16 Total: -122.16 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.31 Total: -30.32 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -74.99 1.86 -73.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001229685.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.421 kcal (2) G-P(sol) polarization free energy of solvation -74.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds