Wall clock time and date at job start Tue Mar 31 2020 16:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38357 * 119.40523 * 2 1 4 4 C 1.38340 * 119.45804 * 180.02562 * 3 2 1 5 5 C 1.39990 * 118.34707 * 0.02562 * 4 3 2 6 6 C 1.47525 * 120.59670 * 179.97438 * 5 4 3 7 7 O 1.21583 * 120.00143 * 180.02562 * 6 5 4 8 8 N 1.34774 * 119.99930 * 0.27190 * 6 5 4 9 9 C 1.46497 * 120.00413 * 179.72662 * 8 6 5 10 10 H 1.09004 * 115.54835 * 9.31672 * 9 8 6 11 11 C 1.53030 * 117.50616 * 223.58479 * 9 8 6 12 12 C 1.52822 * 117.50614 * 154.99416 * 9 8 6 13 13 C 1.53178 * 117.70955 * 359.86620 * 12 9 8 14 14 C 1.53356 * 108.76851 * 158.88396 * 13 12 9 15 15 N 1.46842 * 108.81379 * 51.30361 * 14 13 12 16 16 C 1.36937 * 120.38141 * 123.12120 * 15 14 13 17 17 H 1.08001 * 120.00084 * 208.88379 * 16 15 14 18 18 C 1.38810 * 120.00227 * 28.88914 * 16 15 14 19 19 N 1.31626 * 119.99764 * 17.85095 * 18 16 15 20 20 Si 1.86803 * 120.00472 * 197.84940 * 18 16 15 21 21 H 1.48501 * 109.46730 * 59.99971 * 20 18 16 22 22 H 1.48498 * 109.47272 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46889 * 300.00139 * 20 18 16 24 24 C 1.46847 * 119.23631 * 303.10028 * 15 14 13 25 25 C 1.53180 * 117.71360 * 215.10248 * 12 9 8 26 26 C 1.40280 * 118.80483 * 0.24627 * 5 4 3 27 27 O 1.35431 * 119.79593 * 179.72655 * 26 5 4 28 28 N 1.31884 * 119.40751 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47238 * 90.00610 * 1 2 3 30 30 H 1.09004 * 109.46974 * 209.99918 * 1 2 3 31 31 H 1.08992 * 109.47423 * 330.00164 * 1 2 3 32 32 H 1.07997 * 120.27143 * 0.04350 * 3 2 1 33 33 H 1.07999 * 120.82381 * 179.97438 * 4 3 2 34 34 H 0.97007 * 120.00362 * 359.72301 * 8 6 5 35 35 H 1.08999 * 117.49875 * 359.97438 * 11 9 8 36 36 H 1.09000 * 117.50380 * 145.04087 * 11 9 8 37 37 H 1.08994 * 109.59022 * 278.66380 * 13 12 9 38 38 H 1.09000 * 109.59333 * 39.10356 * 13 12 9 39 39 H 1.08996 * 109.58031 * 291.50816 * 14 13 12 40 40 H 1.08996 * 109.58219 * 171.10458 * 14 13 12 41 41 H 0.97001 * 120.00157 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.57913 * 297.10637 * 24 15 14 43 43 H 1.09000 * 109.58005 * 176.70236 * 24 15 14 44 44 H 1.09002 * 109.58902 * 320.90384 * 25 12 9 45 45 H 1.08991 * 109.58825 * 81.34027 * 25 12 9 46 46 H 0.96702 * 113.99596 * 90.00518 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.2355 -0.0248 -0.0016 6 6 5.7097 -0.0814 -0.0028 7 8 6.2768 -1.1568 -0.0042 8 7 6.4278 1.0591 0.0027 9 6 7.8917 1.0031 0.0076 10 1 8.3249 0.0157 -0.1528 11 6 8.6323 1.9560 0.9484 12 6 8.6459 2.2051 -0.5596 13 6 7.8181 3.3779 -1.0940 14 6 8.6968 4.6346 -1.1114 15 7 9.9510 4.3259 -1.8099 16 6 10.3354 5.0602 -2.9000 17 1 10.9418 4.6067 -3.6701 18 6 9.9459 6.3875 -3.0152 19 7 9.5227 7.0436 -1.9555 20 14 10.0221 7.2428 -4.6742 21 1 9.1498 6.5277 -5.6402 22 1 9.5550 8.6450 -4.5302 23 1 11.4214 7.2352 -5.1712 24 6 10.7884 3.2211 -1.3259 25 6 9.9521 1.9356 -1.3131 26 6 3.4757 -1.2040 -0.0074 27 8 4.0992 -2.4063 -0.0141 28 7 2.1546 -1.1489 -0.0005 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6410 2.1375 0.0007 33 1 4.1222 2.1345 -0.0010 34 1 5.9754 1.9172 0.0034 35 1 8.0303 2.6249 1.5634 36 1 9.5529 1.5956 1.4074 37 1 7.4793 3.1551 -2.1057 38 1 6.9573 3.5429 -0.4461 39 1 8.9145 4.9422 -0.0887 40 1 8.1760 5.4373 -1.6333 41 1 9.2501 7.9710 -2.0360 42 1 11.1356 3.4411 -0.3164 43 1 11.6441 3.0936 -1.9890 44 1 10.5072 1.1435 -0.8104 45 1 9.7283 1.6352 -2.3365 46 1 4.2807 -2.7601 0.8673 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016850091.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:43 Heat of formation + Delta-G solvation = 8.003889 kcal Electronic energy + Delta-G solvation = -28123.040244 eV Core-core repulsion = 24207.389636 eV Total energy + Delta-G solvation = -3915.650608 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.15239 -39.66854 -38.30000 -37.40471 -35.49078 -33.92449 -32.70115 -31.95066 -31.41019 -30.15184 -28.54824 -27.99548 -24.38371 -24.00680 -23.44767 -22.50145 -22.08605 -21.02623 -20.37862 -18.92609 -18.33686 -17.87138 -17.23954 -16.46471 -16.12021 -15.77974 -15.11937 -14.94584 -14.76471 -14.51824 -14.22965 -14.13562 -13.71228 -13.51680 -13.40908 -13.05960 -12.94300 -12.70603 -12.59908 -12.44607 -12.29556 -11.86095 -11.75340 -11.54372 -11.41050 -10.99910 -10.73830 -10.54504 -10.34287 -10.31050 -10.28875 -9.99830 -9.75958 -9.70152 -9.61862 -9.38584 -9.18425 -8.50546 -8.46474 -6.66907 -5.82033 -3.24790 0.24282 0.74098 2.61754 2.92004 3.19210 3.36341 3.41955 3.43898 3.45954 4.13466 4.16042 4.25175 4.41077 4.47576 4.58013 4.89841 4.94265 4.99758 5.10012 5.10914 5.15579 5.17594 5.36153 5.47352 5.49436 5.55540 5.60232 5.62065 5.83522 6.01209 6.04068 6.07003 6.07971 6.24715 6.40843 6.52080 6.53474 6.60783 6.67195 6.80295 6.97447 7.23693 7.29457 7.41112 7.53001 7.60201 7.77121 8.11611 8.43629 9.19065 9.82602 10.39214 11.25814 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015457 B = 0.002706 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.066597 B =10345.329281 C =11538.457233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.174 3.826 3 C -0.190 4.190 4 C -0.024 4.024 5 C -0.210 4.210 6 C 0.565 3.435 7 O -0.523 6.523 8 N -0.690 5.690 9 C 0.070 3.930 10 H 0.133 0.867 11 C -0.181 4.181 12 C -0.096 4.096 13 C -0.105 4.105 14 C 0.174 3.826 15 N -0.589 5.589 16 C -0.253 4.253 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.902 5.902 20 Si 0.901 3.099 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.149 3.851 25 C -0.098 4.098 26 C 0.376 3.624 27 O -0.459 6.459 28 N -0.510 5.510 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.399 0.601 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.042 0.958 39 H 0.018 0.982 40 H 0.090 0.910 41 H 0.254 0.746 42 H 0.020 0.980 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.063 0.937 46 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.647 -11.697 8.171 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.036 3.964 3 C -0.210 4.210 4 C -0.050 4.050 5 C -0.216 4.216 6 C 0.351 3.649 7 O -0.399 6.399 8 N -0.340 5.340 9 C -0.036 4.036 10 H 0.151 0.849 11 C -0.220 4.220 12 C -0.098 4.098 13 C -0.144 4.144 14 C 0.048 3.952 15 N -0.312 5.312 16 C -0.383 4.383 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.731 3.269 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.208 1.208 24 C 0.023 3.977 25 C -0.138 4.138 26 C 0.196 3.804 27 O -0.266 6.266 28 N -0.230 5.230 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.165 0.835 33 H 0.162 0.838 34 H 0.236 0.764 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.036 0.964 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -15.699 -13.052 7.586 21.780 hybrid contribution 0.319 1.677 -0.304 1.734 sum -15.380 -11.375 7.282 20.468 Atomic orbital electron populations 1.20840 0.88053 1.04008 1.03741 1.21303 0.97143 0.87210 0.90743 1.21931 0.94453 0.99728 1.04883 1.21784 0.94705 0.97122 0.91409 1.21128 0.94939 0.94487 1.11086 1.17748 0.85807 0.84382 0.76954 1.90796 1.71660 1.28383 1.49097 1.45292 1.06354 1.08325 1.74065 1.21899 0.78389 0.97409 1.05888 0.84923 1.23540 1.02142 1.02492 0.93812 1.21965 0.97885 0.95612 0.94316 1.21821 0.96867 0.96435 0.99320 1.20741 0.86119 0.92698 0.95654 1.43962 1.19231 1.34781 1.33180 1.19160 1.31086 0.91387 0.96628 0.91799 1.25041 1.01689 0.95865 0.97013 1.70027 1.48137 1.09581 1.26937 0.86389 0.78049 0.78405 0.84063 1.21037 1.21648 1.20848 1.20864 0.92628 0.87197 0.97051 1.21696 0.93690 0.99169 0.99214 1.19122 0.86040 0.85148 0.90136 1.84731 1.76353 1.31763 1.33794 1.67156 1.09319 1.30442 1.16118 0.89674 0.90038 0.90020 0.83550 0.83805 0.76445 0.88931 0.88346 0.92008 0.93981 0.96393 0.89212 0.93608 0.96225 0.92620 0.92785 0.91784 0.73520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.16 36.00 0.37 -0.23 16 2 C 0.17 1.55 6.78 -82.53 -0.56 0.99 16 3 C -0.19 -1.46 9.71 -39.50 -0.38 -1.85 16 4 C -0.02 -0.22 9.64 -38.89 -0.37 -0.59 16 5 C -0.21 -2.50 5.90 -104.69 -0.62 -3.12 16 6 C 0.56 7.93 7.77 -12.48 -0.10 7.83 16 7 O -0.52 -8.86 14.76 -16.48 -0.24 -9.10 16 8 N -0.69 -8.92 5.30 -54.93 -0.29 -9.21 16 9 C 0.07 1.00 6.14 -68.01 -0.42 0.58 16 10 H 0.13 2.03 7.40 -51.93 -0.38 1.64 16 11 C -0.18 -2.53 9.86 -26.79 -0.26 -2.80 16 12 C -0.10 -1.55 1.94 -154.49 -0.30 -1.85 16 13 C -0.10 -1.86 5.37 -26.45 -0.14 -2.00 16 14 C 0.17 3.93 5.40 -3.67 -0.02 3.91 16 15 N -0.59 -14.33 2.94 -172.25 -0.51 -14.84 16 16 C -0.25 -6.81 9.54 -15.06 -0.14 -6.95 16 17 H 0.06 1.70 7.89 -52.49 -0.41 1.29 16 18 C 0.00 0.07 4.89 -17.43 -0.09 -0.02 16 19 N -0.90 -25.53 11.23 55.49 0.62 -24.90 16 20 Si 0.90 21.32 29.59 -169.99 -5.03 16.29 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.15 3.05 6.52 -3.67 -0.02 3.03 16 25 C -0.10 -1.68 5.83 -26.45 -0.15 -1.83 16 26 C 0.38 4.72 7.77 -16.61 -0.13 4.59 16 27 O -0.46 -5.81 11.66 -39.76 -0.46 -6.27 16 28 N -0.51 -5.95 10.28 -9.21 -0.09 -6.04 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.27 8.07 -51.93 -0.42 -0.15 16 32 H 0.15 0.69 8.06 -52.49 -0.42 0.26 16 33 H 0.14 0.99 6.52 -52.49 -0.34 0.65 16 34 H 0.40 4.39 5.22 -40.82 -0.21 4.18 16 35 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.04 0.62 6.75 -51.93 -0.35 0.27 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.09 2.29 5.93 -51.93 -0.31 1.98 16 41 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 1.12 7.92 -51.93 -0.41 0.71 16 44 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.41 3.36 9.06 45.56 0.41 3.77 16 LS Contribution 374.65 15.07 5.65 5.65 Total: -1.00 -33.50 374.65 -9.50 -42.99 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.79 Total: 5.75 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -3.35 Total: -0.31 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.27 Total: -55.00 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.71 Total: -15.38 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.50 -9.50 -42.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016850091.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.997 kcal (2) G-P(sol) polarization free energy of solvation -33.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds