Wall clock time and date at job start Tue Mar 31 2020 16:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38357 * 119.40523 * 2 1 4 4 C 1.38340 * 119.45804 * 180.02562 * 3 2 1 5 5 C 1.39990 * 118.34707 * 0.02562 * 4 3 2 6 6 C 1.47525 * 120.59670 * 179.97438 * 5 4 3 7 7 O 1.21583 * 120.00143 * 180.02562 * 6 5 4 8 8 N 1.34774 * 119.99930 * 0.27190 * 6 5 4 9 9 C 1.46497 * 120.00413 * 179.72662 * 8 6 5 10 10 H 1.09004 * 115.54835 * 9.31672 * 9 8 6 11 11 C 1.53030 * 117.50616 * 223.58479 * 9 8 6 12 12 C 1.52822 * 117.50614 * 154.99416 * 9 8 6 13 13 C 1.53178 * 117.70955 * 359.86620 * 12 9 8 14 14 C 1.53356 * 108.76851 * 158.88396 * 13 12 9 15 15 N 1.46842 * 108.81379 * 51.30361 * 14 13 12 16 16 C 1.36937 * 120.38141 * 123.12120 * 15 14 13 17 17 H 1.08001 * 120.00084 * 208.88379 * 16 15 14 18 18 C 1.38810 * 120.00227 * 28.88914 * 16 15 14 19 19 N 1.31626 * 119.99764 * 17.85095 * 18 16 15 20 20 Si 1.86803 * 120.00472 * 197.84940 * 18 16 15 21 21 H 1.48501 * 109.46730 * 59.99971 * 20 18 16 22 22 H 1.48498 * 109.47272 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46889 * 300.00139 * 20 18 16 24 24 C 1.46847 * 119.23631 * 303.10028 * 15 14 13 25 25 C 1.53180 * 117.71360 * 215.10248 * 12 9 8 26 26 C 1.40280 * 118.80483 * 0.24627 * 5 4 3 27 27 O 1.35431 * 119.79593 * 179.72655 * 26 5 4 28 28 N 1.31884 * 119.40751 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47238 * 90.00610 * 1 2 3 30 30 H 1.09004 * 109.46974 * 209.99918 * 1 2 3 31 31 H 1.08992 * 109.47423 * 330.00164 * 1 2 3 32 32 H 1.07997 * 120.27143 * 0.04350 * 3 2 1 33 33 H 1.07999 * 120.82381 * 179.97438 * 4 3 2 34 34 H 0.97007 * 120.00362 * 359.72301 * 8 6 5 35 35 H 1.08999 * 117.49875 * 359.97438 * 11 9 8 36 36 H 1.09000 * 117.50380 * 145.04087 * 11 9 8 37 37 H 1.08994 * 109.59022 * 278.66380 * 13 12 9 38 38 H 1.09000 * 109.59333 * 39.10356 * 13 12 9 39 39 H 1.08996 * 109.58031 * 291.50816 * 14 13 12 40 40 H 1.08996 * 109.58219 * 171.10458 * 14 13 12 41 41 H 0.97001 * 120.00157 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.57913 * 297.10637 * 24 15 14 43 43 H 1.09000 * 109.58005 * 176.70236 * 24 15 14 44 44 H 1.09002 * 109.58902 * 320.90384 * 25 12 9 45 45 H 1.08991 * 109.58825 * 81.34027 * 25 12 9 46 46 H 0.96702 * 113.99596 * 90.00518 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.2355 -0.0248 -0.0016 6 6 5.7097 -0.0814 -0.0028 7 8 6.2768 -1.1568 -0.0042 8 7 6.4278 1.0591 0.0027 9 6 7.8917 1.0031 0.0076 10 1 8.3249 0.0157 -0.1528 11 6 8.6323 1.9560 0.9484 12 6 8.6459 2.2051 -0.5596 13 6 7.8181 3.3779 -1.0940 14 6 8.6968 4.6346 -1.1114 15 7 9.9510 4.3259 -1.8099 16 6 10.3354 5.0602 -2.9000 17 1 10.9418 4.6067 -3.6701 18 6 9.9459 6.3875 -3.0152 19 7 9.5227 7.0436 -1.9555 20 14 10.0221 7.2428 -4.6742 21 1 9.1498 6.5277 -5.6402 22 1 9.5550 8.6450 -4.5302 23 1 11.4214 7.2352 -5.1712 24 6 10.7884 3.2211 -1.3259 25 6 9.9521 1.9356 -1.3131 26 6 3.4757 -1.2040 -0.0074 27 8 4.0992 -2.4063 -0.0141 28 7 2.1546 -1.1489 -0.0005 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6410 2.1375 0.0007 33 1 4.1222 2.1345 -0.0010 34 1 5.9754 1.9172 0.0034 35 1 8.0303 2.6249 1.5634 36 1 9.5529 1.5956 1.4074 37 1 7.4793 3.1551 -2.1057 38 1 6.9573 3.5429 -0.4461 39 1 8.9145 4.9422 -0.0887 40 1 8.1760 5.4373 -1.6333 41 1 9.2501 7.9710 -2.0360 42 1 11.1356 3.4411 -0.3164 43 1 11.6441 3.0936 -1.9890 44 1 10.5072 1.1435 -0.8104 45 1 9.7283 1.6352 -2.3365 46 1 4.2807 -2.7601 0.8673 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016850091.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:42 Heat of formation + Delta-G solvation = -15.606906 kcal Electronic energy + Delta-G solvation = -28124.064085 eV Core-core repulsion = 24207.389636 eV Total energy + Delta-G solvation = -3916.674449 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.99266 -40.78974 -39.52094 -38.26787 -37.08777 -34.95869 -33.97544 -32.94131 -32.63164 -31.74674 -29.97697 -28.86394 -26.23224 -24.88497 -24.20625 -23.98188 -23.20016 -22.50130 -21.52171 -19.88962 -19.71308 -18.94668 -18.31629 -17.94209 -17.02589 -16.85264 -16.74784 -16.02128 -15.87219 -15.62114 -15.38180 -15.33915 -15.00408 -14.85173 -14.65001 -14.30242 -14.13094 -13.73033 -13.60343 -13.34232 -13.13724 -13.05660 -13.03288 -12.91117 -12.64319 -12.56610 -12.53859 -12.33118 -12.00154 -11.77666 -11.38712 -11.33041 -11.22700 -11.05399 -10.74777 -10.52708 -10.44752 -9.96364 -9.64256 -8.60833 -7.85714 -5.31282 -0.53633 0.03733 1.47457 1.49203 1.56034 1.68087 1.91053 2.42594 2.52313 2.66177 2.96795 3.28770 3.40398 3.61674 3.62651 3.66753 3.81859 3.86188 3.90294 3.99237 4.13137 4.24003 4.40371 4.53239 4.62042 4.65488 4.71380 4.79628 4.85970 4.87388 4.88750 4.94060 5.01071 5.02994 5.08763 5.12502 5.22401 5.30397 5.37724 5.44747 5.49139 5.54665 5.66644 5.79913 6.38204 6.42393 6.52011 6.79339 7.08717 7.18018 7.89993 8.40538 9.19048 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015457 B = 0.002706 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.066597 B =10345.329281 C =11538.457233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.168 3.832 3 C -0.180 4.180 4 C -0.022 4.022 5 C -0.229 4.229 6 C 0.565 3.435 7 O -0.559 6.559 8 N -0.683 5.683 9 C 0.084 3.916 10 H 0.126 0.874 11 C -0.165 4.165 12 C -0.116 4.116 13 C -0.089 4.089 14 C 0.180 3.820 15 N -0.609 5.609 16 C -0.265 4.265 17 H 0.060 0.940 18 C -0.047 4.047 19 N -0.930 5.930 20 Si 0.962 3.038 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.278 1.278 24 C 0.146 3.854 25 C -0.088 4.088 26 C 0.357 3.643 27 O -0.480 6.480 28 N -0.534 5.534 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.185 0.815 33 H 0.167 0.833 34 H 0.410 0.590 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.001 0.999 40 H 0.056 0.944 41 H 0.251 0.749 42 H 0.019 0.981 43 H 0.050 0.950 44 H 0.081 0.919 45 H 0.051 0.949 46 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.393 -11.472 8.648 22.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.030 3.970 3 C -0.199 4.199 4 C -0.047 4.047 5 C -0.236 4.236 6 C 0.353 3.647 7 O -0.439 6.439 8 N -0.333 5.333 9 C -0.022 4.022 10 H 0.144 0.856 11 C -0.204 4.204 12 C -0.118 4.118 13 C -0.129 4.129 14 C 0.054 3.946 15 N -0.332 5.332 16 C -0.395 4.395 17 H 0.078 0.922 18 C -0.242 4.242 19 N -0.576 5.576 20 Si 0.791 3.209 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.021 3.979 25 C -0.127 4.127 26 C 0.177 3.823 27 O -0.289 6.289 28 N -0.255 5.255 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.128 0.872 32 H 0.202 0.798 33 H 0.185 0.815 34 H 0.248 0.752 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.019 0.981 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.037 0.963 43 H 0.069 0.931 44 H 0.099 0.901 45 H 0.070 0.930 46 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -17.452 -12.837 8.076 23.121 hybrid contribution 0.817 1.597 -0.420 1.842 sum -16.635 -11.240 7.656 21.487 Atomic orbital electron populations 1.20973 0.85605 1.05260 1.04631 1.22013 0.98795 0.86984 0.89230 1.22351 0.93975 1.00772 1.02802 1.22098 0.95561 0.96752 0.90318 1.20996 0.93585 0.95595 1.13409 1.18070 0.86731 0.83910 0.75973 1.90772 1.72549 1.29659 1.50871 1.45197 1.05752 1.08703 1.73689 1.21704 0.79115 0.96315 1.05043 0.85642 1.23629 1.02644 1.01737 0.92345 1.21827 0.97729 0.96145 0.96074 1.21556 0.97109 0.94596 0.99603 1.20559 0.86123 0.94113 0.93760 1.44239 1.20526 1.35405 1.33034 1.19441 1.30715 0.91855 0.97498 0.92190 1.25724 1.02051 0.96514 0.99936 1.70163 1.49359 1.09540 1.28557 0.85424 0.78038 0.77096 0.80376 1.20639 1.21798 1.20395 1.20977 0.92786 0.87621 0.96558 1.21530 0.94109 0.97825 0.99242 1.19314 0.86631 0.85187 0.91136 1.84675 1.76671 1.32403 1.35176 1.67202 1.08970 1.32130 1.17225 0.88754 0.90446 0.87152 0.79772 0.81535 0.75210 0.87818 0.87110 0.93313 0.90786 0.98066 0.92532 0.94034 0.96280 0.93114 0.90063 0.92987 0.72192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.16 71.24 0.72 -0.13 16 2 C 0.17 2.59 6.78 42.58 0.29 2.87 16 3 C -0.18 -2.14 9.71 22.32 0.22 -1.93 16 4 C -0.02 -0.33 9.64 22.72 0.22 -0.11 16 5 C -0.23 -5.22 5.90 -19.91 -0.12 -5.33 16 6 C 0.57 15.35 7.77 86.69 0.67 16.03 16 7 O -0.56 -18.97 14.76 16.84 0.25 -18.72 16 8 N -0.68 -16.30 5.30 -445.96 -2.36 -18.66 16 9 C 0.08 2.25 6.14 44.94 0.28 2.52 16 10 H 0.13 3.64 7.40 -2.39 -0.02 3.62 16 11 C -0.17 -4.17 9.86 30.56 0.30 -3.87 16 12 C -0.12 -3.54 1.94 -52.17 -0.10 -3.64 16 13 C -0.09 -3.06 5.37 30.77 0.17 -2.89 16 14 C 0.18 8.21 5.40 86.43 0.47 8.67 16 15 N -0.61 -29.95 2.94 -698.89 -2.05 -32.00 16 16 C -0.26 -14.45 9.54 84.03 0.80 -13.65 16 17 H 0.06 3.24 7.89 -2.91 -0.02 3.22 16 18 C -0.05 -2.56 4.89 84.86 0.41 -2.14 16 19 N -0.93 -53.60 11.23 21.65 0.24 -53.36 16 20 Si 0.96 44.27 29.59 68.60 2.03 46.30 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 C 0.15 5.95 6.52 86.43 0.56 6.51 16 25 C -0.09 -2.90 5.83 30.77 0.18 -2.72 16 26 C 0.36 8.91 7.77 85.13 0.66 9.57 16 27 O -0.48 -12.54 11.66 -66.45 -0.77 -13.32 16 28 N -0.53 -12.04 10.28 -296.06 -3.04 -15.08 16 29 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.11 0.25 8.07 -2.39 -0.02 0.23 16 32 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 33 H 0.17 1.68 6.52 -2.91 -0.02 1.66 16 34 H 0.41 7.86 5.22 -92.70 -0.48 7.37 16 35 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.07 2.01 6.75 -2.39 -0.02 1.99 16 39 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.06 2.94 5.93 -2.39 -0.01 2.93 16 41 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 42 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.05 2.06 7.92 -2.39 -0.02 2.04 16 44 H 0.08 2.23 8.10 -2.39 -0.02 2.21 16 45 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.42 7.42 9.06 -74.06 -0.67 6.75 16 Total: -1.00 -74.71 374.65 -0.11 -74.82 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -0.13 Total: 20.25 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 5.73 Total: 9.77 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -7.22 Total: -119.10 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.53 Total: -32.04 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -74.71 -0.11 -74.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016850091.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.211 kcal (2) G-P(sol) polarization free energy of solvation -74.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds