Wall clock time and date at job start Tue Mar 31 2020 17:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37994 * 120.81817 * 2 1 4 4 C 1.39125 * 119.26263 * 179.97438 * 3 2 1 5 5 O 1.35497 * 119.52877 * 179.97438 * 4 3 2 6 6 N 1.32439 * 120.95002 * 0.26797 * 4 3 2 7 7 C 1.31636 * 121.79916 * 359.43953 * 6 4 3 8 8 C 1.39560 * 120.62349 * 0.55904 * 7 6 4 9 9 C 1.47620 * 120.49956 * 179.75012 * 8 7 6 10 10 O 1.21581 * 120.00046 * 186.54503 * 9 8 7 11 11 N 1.34773 * 120.00024 * 6.53673 * 9 8 7 12 12 C 1.46498 * 120.00209 * 180.02562 * 11 9 8 13 13 C 1.53150 * 109.43584 * 119.93544 * 12 11 9 14 14 C 1.53699 * 108.87485 * 66.17442 * 13 12 11 15 15 H 1.09002 * 112.10156 * 188.25158 * 14 13 12 16 16 C 1.54608 * 107.83750 * 312.23342 * 14 13 12 17 17 C 1.54304 * 104.75472 * 88.66503 * 16 14 13 18 18 C 1.54606 * 104.75035 * 0.02562 * 17 16 14 19 19 H 1.08999 * 112.19446 * 146.79730 * 18 17 16 20 20 C 1.53152 * 109.43534 * 240.15856 * 12 11 9 21 21 N 1.48297 * 104.26088 * 25.14031 * 18 17 16 22 22 C 1.36938 * 128.20976 * 138.42783 * 21 18 17 23 23 H 1.08006 * 119.99412 * 195.45526 * 22 21 18 24 24 C 1.38813 * 120.00060 * 15.46139 * 22 21 18 25 25 N 1.31614 * 119.99897 * 9.14296 * 24 22 21 26 26 Si 1.86804 * 119.99566 * 189.14677 * 24 22 21 27 27 H 1.48504 * 109.46996 * 89.99995 * 26 24 22 28 28 H 1.48501 * 109.47013 * 209.99851 * 26 24 22 29 29 H 1.48496 * 109.47191 * 330.00011 * 26 24 22 30 30 H 1.09003 * 109.46895 * 96.19028 * 1 2 3 31 31 H 1.08997 * 109.47239 * 216.18215 * 1 2 3 32 32 H 1.09000 * 109.47287 * 336.18517 * 1 2 3 33 33 H 1.07993 * 120.37029 * 359.97438 * 3 2 1 34 34 H 0.96699 * 114.00140 * 89.99467 * 5 4 3 35 35 H 1.08005 * 119.68772 * 180.30946 * 7 6 4 36 36 H 0.97006 * 119.99682 * 0.02562 * 11 9 8 37 37 H 1.09002 * 109.43282 * 0.02562 * 12 11 9 38 38 H 1.08994 * 109.57074 * 185.99142 * 13 12 11 39 39 H 1.08994 * 109.56746 * 306.35825 * 13 12 11 40 40 H 1.08996 * 110.38523 * 207.49125 * 16 14 13 41 41 H 1.09001 * 110.37711 * 329.73338 * 16 14 13 42 42 H 1.09004 * 110.38328 * 118.82070 * 17 16 14 43 43 H 1.09005 * 110.38410 * 241.18483 * 17 16 14 44 44 H 1.08995 * 109.56783 * 53.64045 * 20 12 11 45 45 H 1.08999 * 109.56779 * 174.00360 * 20 12 11 46 46 H 0.97006 * 119.99179 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1473 0.0005 5 8 4.3043 2.3077 0.0000 6 7 4.2548 -0.0066 -0.0043 7 6 3.6205 -1.1600 0.0012 8 6 2.2256 -1.2043 0.0007 9 6 1.5172 -2.4994 0.0013 10 8 0.3078 -2.5308 -0.1191 11 7 2.2110 -3.6470 0.1353 12 6 1.5081 -4.9323 0.1353 13 6 2.0176 -5.7920 -1.0252 14 6 3.4890 -6.1538 -0.7673 15 1 3.9477 -6.6431 -1.6266 16 6 4.2322 -4.8584 -0.3675 17 6 4.0758 -4.7728 1.1652 18 6 3.2533 -6.0248 1.5476 19 1 3.5316 -6.4174 2.5256 20 6 1.7638 -5.6530 1.4623 21 7 3.5297 -6.9906 0.4566 22 6 3.7651 -8.3359 0.5558 23 1 4.1941 -8.8719 -0.2780 24 6 3.4524 -9.0107 1.7279 25 7 2.7683 -8.4035 2.6743 26 14 4.0027 -10.7804 1.9620 27 1 5.3433 -10.8016 2.6005 28 1 3.0296 -11.4907 2.8302 29 1 4.0728 -11.4558 0.6413 30 1 -0.3633 -0.1108 -1.0217 31 1 -0.3633 -0.8294 0.6067 32 1 -0.3634 0.9402 0.4149 33 1 1.6936 2.1313 -0.0004 34 1 4.5070 2.6452 0.8832 35 1 4.1850 -2.0809 0.0021 36 1 3.1760 -3.6219 0.2317 37 1 0.4382 -4.7606 0.0169 38 1 1.4239 -6.7035 -1.0926 39 1 1.9372 -5.2321 -1.9569 40 1 5.2858 -4.9261 -0.6384 41 1 3.7727 -3.9939 -0.8466 42 1 5.0525 -4.7984 1.6486 43 1 3.5380 -3.8659 1.4419 44 1 1.5038 -4.9948 2.2912 45 1 1.1583 -6.5582 1.5087 46 1 2.5495 -8.8753 3.4932 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021375862.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:40 Heat of formation + Delta-G solvation = 65.627949 kcal Electronic energy + Delta-G solvation = -29793.858674 eV Core-core repulsion = 25880.706833 eV Total energy + Delta-G solvation = -3913.151841 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.50426 -40.50252 -38.53322 -37.15346 -34.60392 -33.75859 -32.28249 -31.78902 -30.50757 -30.11983 -29.04231 -27.99238 -25.02420 -24.15471 -23.37476 -22.68484 -21.61877 -20.59468 -19.66616 -19.47109 -18.67751 -17.97673 -17.31395 -16.64353 -16.10846 -15.52736 -14.98788 -14.91293 -14.69611 -14.27691 -13.86717 -13.57011 -13.28119 -13.13260 -12.99975 -12.96919 -12.81493 -12.75707 -12.46698 -12.17619 -12.06885 -11.90945 -11.70778 -11.61656 -11.01473 -10.94958 -10.70173 -10.43702 -10.33093 -10.10358 -10.00807 -9.80504 -9.75521 -9.55526 -9.41664 -9.32478 -9.21377 -8.67838 -8.26026 -6.88697 -5.83119 -3.18404 0.35893 0.90750 2.76789 3.26961 3.35303 3.41715 3.42865 3.47009 3.63555 4.26097 4.41403 4.44736 4.59626 4.88168 4.97699 5.06145 5.21192 5.28814 5.35469 5.38501 5.52527 5.55369 5.59093 5.61220 5.71551 5.77947 5.83506 5.91639 5.95817 6.09729 6.12115 6.24207 6.27907 6.45485 6.49238 6.51137 6.58196 6.72365 6.83414 6.95396 7.05729 7.12374 7.45609 7.48495 7.55438 7.68310 7.78349 8.15767 8.41711 9.06904 9.69052 10.46699 11.29408 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.023673 B = 0.003196 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.509902 B = 8759.734777 C = 9295.485377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.032 3.968 3 C -0.198 4.198 4 C 0.330 3.670 5 O -0.482 6.482 6 N -0.508 5.508 7 C 0.159 3.841 8 C -0.197 4.197 9 C 0.544 3.456 10 O -0.544 6.544 11 N -0.728 5.728 12 C 0.142 3.858 13 C -0.138 4.138 14 C 0.150 3.850 15 H 0.070 0.930 16 C -0.165 4.165 17 C -0.177 4.177 18 C 0.183 3.817 19 H 0.112 0.888 20 C -0.124 4.124 21 N -0.582 5.582 22 C -0.225 4.225 23 H 0.076 0.924 24 C -0.003 4.003 25 N -0.911 5.911 26 Si 0.910 3.090 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.146 0.854 34 H 0.403 0.597 35 H 0.162 0.838 36 H 0.426 0.574 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.044 0.956 45 H 0.087 0.913 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.590 17.843 -3.243 18.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.024 3.976 3 C -0.219 4.219 4 C 0.152 3.848 5 O -0.289 6.289 6 N -0.227 5.227 7 C 0.001 3.999 8 C -0.202 4.202 9 C 0.331 3.669 10 O -0.424 6.424 11 N -0.400 5.400 12 C 0.038 3.962 13 C -0.179 4.179 14 C 0.042 3.958 15 H 0.088 0.912 16 C -0.205 4.205 17 C -0.216 4.216 18 C 0.076 3.924 19 H 0.130 0.870 20 C -0.164 4.164 21 N -0.303 5.303 22 C -0.354 4.354 23 H 0.094 0.906 24 C -0.200 4.200 25 N -0.557 5.557 26 Si 0.741 3.259 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.102 0.898 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.164 0.836 34 H 0.262 0.738 35 H 0.179 0.821 36 H 0.287 0.713 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.106 0.894 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.499 17.571 -3.763 17.976 hybrid contribution -0.059 -0.703 0.636 0.950 sum -0.558 16.868 -3.127 17.164 Atomic orbital electron populations 1.21114 0.88635 1.03687 1.04401 1.20385 0.97748 0.90564 0.88898 1.21987 0.93697 0.99547 1.06714 1.19360 0.87111 0.85223 0.93113 1.84712 1.75998 1.34091 1.34123 1.67157 1.42000 0.98168 1.15358 1.22789 0.90512 0.95259 0.91371 1.21054 0.94999 0.95166 1.08995 1.18141 0.87252 0.84150 0.77382 1.90682 1.13744 1.87268 1.50691 1.49061 1.13770 1.05811 1.71358 1.21158 0.96829 0.81153 0.97019 1.22514 0.99895 0.99394 0.96074 1.21519 0.92251 0.90307 0.91723 0.91206 1.23325 1.01129 0.99700 0.96313 1.23482 1.01679 1.01194 0.95274 1.21480 0.89993 0.85383 0.95540 0.87029 1.22388 1.01115 0.99606 0.93289 1.45161 1.81984 1.03526 0.99626 1.18987 1.34216 0.81980 1.00176 0.90649 1.24840 0.99350 0.97983 0.97863 1.69856 1.41480 1.36373 1.07989 0.86150 0.77850 0.84280 0.77628 1.21636 1.21761 1.20677 0.89781 0.87812 0.91871 0.83616 0.73810 0.82115 0.71349 0.89635 0.90612 0.93290 0.91711 0.90739 0.91848 0.90775 0.93752 0.89431 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 8.84 36.01 0.32 -0.99 16 2 C 0.03 0.38 5.95 -103.96 -0.62 -0.24 16 3 C -0.20 -1.99 9.70 -39.34 -0.38 -2.37 16 4 C 0.33 3.67 7.74 -16.96 -0.13 3.54 16 5 O -0.48 -4.35 13.55 -18.18 -0.25 -4.59 16 6 N -0.51 -6.53 10.37 -12.96 -0.13 -6.67 16 7 C 0.16 2.01 10.69 -17.14 -0.18 1.82 16 8 C -0.20 -2.61 5.89 -104.82 -0.62 -3.23 16 9 C 0.54 8.44 7.71 -12.43 -0.10 8.35 16 10 O -0.54 -9.57 12.83 5.29 0.07 -9.50 16 11 N -0.73 -11.28 2.73 -54.67 -0.15 -11.43 16 12 C 0.14 2.53 3.15 -67.77 -0.21 2.32 16 13 C -0.14 -2.47 5.49 -26.29 -0.14 -2.62 16 14 C 0.15 2.84 4.32 -65.72 -0.28 2.55 16 15 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 16 C -0.17 -2.62 5.64 -25.20 -0.14 -2.76 16 17 C -0.18 -3.00 5.76 -25.20 -0.15 -3.15 16 18 C 0.18 3.91 3.13 -65.70 -0.21 3.71 16 19 H 0.11 2.77 6.37 -51.93 -0.33 2.44 16 20 C -0.12 -2.51 5.41 -26.26 -0.14 -2.65 16 21 N -0.58 -13.38 2.82 -152.70 -0.43 -13.81 16 22 C -0.23 -5.82 10.38 -15.06 -0.16 -5.98 16 23 H 0.08 1.91 7.85 -52.48 -0.41 1.50 16 24 C 0.00 -0.08 5.42 -17.43 -0.09 -0.18 16 25 N -0.91 -24.67 10.59 55.49 0.59 -24.08 16 26 Si 0.91 21.06 29.56 -169.99 -5.03 16.04 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.10 1.34 5.96 -51.93 -0.31 1.03 16 32 H 0.06 0.51 8.06 -51.93 -0.42 0.09 16 33 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.40 1.53 9.06 45.56 0.41 1.94 16 35 H 0.16 1.83 5.87 -52.48 -0.31 1.52 16 36 H 0.43 6.12 0.22 -65.41 -0.01 6.11 16 37 H 0.09 1.60 6.89 -51.93 -0.36 1.24 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.07 1.05 4.72 -51.93 -0.25 0.81 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.07 1.14 5.27 -51.93 -0.27 0.87 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.09 2.05 7.99 -51.93 -0.41 1.63 16 46 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 350.60 15.07 5.28 5.28 Total: -1.00 -30.32 350.60 -8.47 -38.80 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -5.19 Total: 11.82 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -3.24 Total: -1.86 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.13 Total: -55.99 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.18 Total: -14.09 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.32 -8.47 -38.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021375862.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.426 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds