Wall clock time and date at job start Tue Mar 31 2020 17:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37994 * 120.81817 * 2 1 4 4 C 1.39125 * 119.26263 * 179.97438 * 3 2 1 5 5 O 1.35497 * 119.52877 * 179.97438 * 4 3 2 6 6 N 1.32439 * 120.95002 * 0.26797 * 4 3 2 7 7 C 1.31636 * 121.79916 * 359.43953 * 6 4 3 8 8 C 1.39560 * 120.62349 * 0.55904 * 7 6 4 9 9 C 1.47620 * 120.49956 * 179.75012 * 8 7 6 10 10 O 1.21581 * 120.00046 * 186.54503 * 9 8 7 11 11 N 1.34773 * 120.00024 * 6.53673 * 9 8 7 12 12 C 1.46498 * 120.00209 * 180.02562 * 11 9 8 13 13 C 1.53150 * 109.43584 * 119.93544 * 12 11 9 14 14 C 1.53699 * 108.87485 * 66.17442 * 13 12 11 15 15 H 1.09002 * 112.10156 * 188.25158 * 14 13 12 16 16 C 1.54608 * 107.83750 * 312.23342 * 14 13 12 17 17 C 1.54304 * 104.75472 * 88.66503 * 16 14 13 18 18 C 1.54606 * 104.75035 * 0.02562 * 17 16 14 19 19 H 1.08999 * 112.19446 * 146.79730 * 18 17 16 20 20 C 1.53152 * 109.43534 * 240.15856 * 12 11 9 21 21 N 1.48297 * 104.26088 * 25.14031 * 18 17 16 22 22 C 1.36938 * 128.20976 * 138.42783 * 21 18 17 23 23 H 1.08006 * 119.99412 * 195.45526 * 22 21 18 24 24 C 1.38813 * 120.00060 * 15.46139 * 22 21 18 25 25 N 1.31614 * 119.99897 * 9.14296 * 24 22 21 26 26 Si 1.86804 * 119.99566 * 189.14677 * 24 22 21 27 27 H 1.48504 * 109.46996 * 89.99995 * 26 24 22 28 28 H 1.48501 * 109.47013 * 209.99851 * 26 24 22 29 29 H 1.48496 * 109.47191 * 330.00011 * 26 24 22 30 30 H 1.09003 * 109.46895 * 96.19028 * 1 2 3 31 31 H 1.08997 * 109.47239 * 216.18215 * 1 2 3 32 32 H 1.09000 * 109.47287 * 336.18517 * 1 2 3 33 33 H 1.07993 * 120.37029 * 359.97438 * 3 2 1 34 34 H 0.96699 * 114.00140 * 89.99467 * 5 4 3 35 35 H 1.08005 * 119.68772 * 180.30946 * 7 6 4 36 36 H 0.97006 * 119.99682 * 0.02562 * 11 9 8 37 37 H 1.09002 * 109.43282 * 0.02562 * 12 11 9 38 38 H 1.08994 * 109.57074 * 185.99142 * 13 12 11 39 39 H 1.08994 * 109.56746 * 306.35825 * 13 12 11 40 40 H 1.08996 * 110.38523 * 207.49125 * 16 14 13 41 41 H 1.09001 * 110.37711 * 329.73338 * 16 14 13 42 42 H 1.09004 * 110.38328 * 118.82070 * 17 16 14 43 43 H 1.09005 * 110.38410 * 241.18483 * 17 16 14 44 44 H 1.08995 * 109.56783 * 53.64045 * 20 12 11 45 45 H 1.08999 * 109.56779 * 174.00360 * 20 12 11 46 46 H 0.97006 * 119.99179 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1473 0.0005 5 8 4.3043 2.3077 0.0000 6 7 4.2548 -0.0066 -0.0043 7 6 3.6205 -1.1600 0.0012 8 6 2.2256 -1.2043 0.0007 9 6 1.5172 -2.4994 0.0013 10 8 0.3078 -2.5308 -0.1191 11 7 2.2110 -3.6470 0.1353 12 6 1.5081 -4.9323 0.1353 13 6 2.0176 -5.7920 -1.0252 14 6 3.4890 -6.1538 -0.7673 15 1 3.9477 -6.6431 -1.6266 16 6 4.2322 -4.8584 -0.3675 17 6 4.0758 -4.7728 1.1652 18 6 3.2533 -6.0248 1.5476 19 1 3.5316 -6.4174 2.5256 20 6 1.7638 -5.6530 1.4623 21 7 3.5297 -6.9906 0.4566 22 6 3.7651 -8.3359 0.5558 23 1 4.1941 -8.8719 -0.2780 24 6 3.4524 -9.0107 1.7279 25 7 2.7683 -8.4035 2.6743 26 14 4.0027 -10.7804 1.9620 27 1 5.3433 -10.8016 2.6005 28 1 3.0296 -11.4907 2.8302 29 1 4.0728 -11.4558 0.6413 30 1 -0.3633 -0.1108 -1.0217 31 1 -0.3633 -0.8294 0.6067 32 1 -0.3634 0.9402 0.4149 33 1 1.6936 2.1313 -0.0004 34 1 4.5070 2.6452 0.8832 35 1 4.1850 -2.0809 0.0021 36 1 3.1760 -3.6219 0.2317 37 1 0.4382 -4.7606 0.0169 38 1 1.4239 -6.7035 -1.0926 39 1 1.9372 -5.2321 -1.9569 40 1 5.2858 -4.9261 -0.6384 41 1 3.7727 -3.9939 -0.8466 42 1 5.0525 -4.7984 1.6486 43 1 3.5380 -3.8659 1.4419 44 1 1.5038 -4.9948 2.2912 45 1 1.1583 -6.5582 1.5087 46 1 2.5495 -8.8753 3.4932 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021375862.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:39 Heat of formation + Delta-G solvation = 44.723095 kcal Electronic energy + Delta-G solvation = -29794.765176 eV Core-core repulsion = 25880.706833 eV Total energy + Delta-G solvation = -3914.058344 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.79519 -41.53067 -39.72914 -37.98788 -36.03590 -34.80569 -33.96122 -33.14066 -31.99183 -31.40988 -30.57951 -28.90141 -26.59740 -25.34666 -24.87789 -23.73353 -22.90813 -21.88503 -21.21886 -20.93681 -19.47118 -19.29607 -18.64645 -17.84538 -16.94304 -16.74667 -16.72205 -16.11953 -15.98811 -15.70609 -15.12343 -14.66825 -14.62449 -14.54770 -14.44095 -14.18393 -13.89623 -13.77070 -13.61434 -13.54071 -13.27590 -13.23005 -13.22432 -12.80414 -12.69910 -12.62253 -12.41311 -12.03992 -11.94780 -11.76643 -11.44232 -11.16812 -11.03692 -10.96489 -10.67551 -10.54726 -10.40430 -10.11188 -9.63530 -8.74218 -7.81623 -5.16377 -0.53825 0.05943 1.49359 1.50327 1.57924 1.73680 2.21461 2.48140 2.52424 2.69491 3.35787 3.42799 3.52547 3.57937 3.65401 3.89868 3.91162 3.97938 4.13847 4.18718 4.25071 4.28135 4.40579 4.42829 4.47818 4.63911 4.66751 4.67332 4.77440 4.78730 4.95219 4.99131 5.02861 5.05819 5.09527 5.25001 5.29147 5.31164 5.42667 5.47528 5.57454 5.57955 5.78809 5.84531 6.28629 6.50957 6.54494 6.76666 7.11594 7.19198 7.77961 8.57731 9.29244 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.023673 B = 0.003196 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.509902 B = 8759.734777 C = 9295.485377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.028 3.972 3 C -0.187 4.187 4 C 0.333 3.667 5 O -0.486 6.486 6 N -0.529 5.529 7 C 0.161 3.839 8 C -0.215 4.215 9 C 0.546 3.454 10 O -0.567 6.567 11 N -0.723 5.723 12 C 0.155 3.845 13 C -0.131 4.131 14 C 0.141 3.859 15 H 0.075 0.925 16 C -0.153 4.153 17 C -0.166 4.166 18 C 0.177 3.823 19 H 0.071 0.929 20 C -0.113 4.113 21 N -0.603 5.603 22 C -0.231 4.231 23 H 0.076 0.924 24 C -0.056 4.056 25 N -0.934 5.934 26 Si 0.968 3.032 27 H -0.290 1.290 28 H -0.300 1.300 29 H -0.273 1.273 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.178 0.822 34 H 0.426 0.574 35 H 0.170 0.830 36 H 0.431 0.569 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.045 0.955 45 H 0.046 0.954 46 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.414 20.720 -4.454 21.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.019 3.981 3 C -0.208 4.208 4 C 0.155 3.845 5 O -0.297 6.297 6 N -0.248 5.248 7 C 0.002 3.998 8 C -0.220 4.220 9 C 0.335 3.665 10 O -0.449 6.449 11 N -0.395 5.395 12 C 0.050 3.950 13 C -0.171 4.171 14 C 0.034 3.966 15 H 0.093 0.907 16 C -0.192 4.192 17 C -0.206 4.206 18 C 0.070 3.930 19 H 0.090 0.910 20 C -0.154 4.154 21 N -0.325 5.325 22 C -0.360 4.360 23 H 0.094 0.906 24 C -0.250 4.250 25 N -0.582 5.582 26 Si 0.798 3.202 27 H -0.217 1.217 28 H -0.227 1.227 29 H -0.198 1.198 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.195 0.805 34 H 0.289 0.711 35 H 0.187 0.813 36 H 0.293 0.707 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.111 0.889 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.531 20.495 -4.984 21.099 hybrid contribution -0.378 -1.468 1.004 1.818 sum 0.153 19.027 -3.981 19.439 Atomic orbital electron populations 1.21066 0.88159 1.04282 1.03972 1.20583 0.98219 0.90690 0.88568 1.22211 0.93257 1.00112 1.05177 1.19589 0.87726 0.85329 0.91822 1.84666 1.75730 1.33081 1.36226 1.67197 1.42548 0.98730 1.16345 1.22852 0.90139 0.95733 0.91027 1.20877 0.95373 0.94315 1.11445 1.18471 0.86995 0.84718 0.76354 1.90685 1.14904 1.87677 1.51591 1.48859 1.13765 1.05026 1.71886 1.20799 0.96660 0.82063 0.95449 1.22413 0.98890 0.98739 0.97100 1.21768 0.93170 0.91101 0.90524 0.90664 1.23238 1.02045 0.98758 0.95171 1.23359 1.01333 0.99532 0.96339 1.21376 0.91096 0.86915 0.93641 0.91047 1.22182 1.00004 0.98153 0.95034 1.45352 1.82139 1.03222 1.01739 1.19274 1.33158 0.83623 0.99957 0.90612 1.25507 1.00243 1.01194 0.98083 1.70048 1.42872 1.37207 1.08038 0.85236 0.76883 0.80664 0.77434 1.21689 1.22683 1.19794 0.89976 0.90311 0.88849 0.80483 0.71073 0.81313 0.70701 0.90481 0.92879 0.90776 0.89930 0.88284 0.91208 0.88888 0.93617 0.93485 0.94556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.29 8.84 71.24 0.63 -1.66 16 2 C 0.03 0.57 5.95 -19.43 -0.12 0.46 16 3 C -0.19 -3.04 9.70 22.42 0.22 -2.83 16 4 C 0.33 6.28 7.74 84.81 0.66 6.94 16 5 O -0.49 -6.98 13.55 -87.98 -1.19 -8.17 16 6 N -0.53 -12.08 10.37 -307.80 -3.19 -15.27 16 7 C 0.16 3.64 10.69 85.04 0.91 4.54 16 8 C -0.21 -5.25 5.89 -19.99 -0.12 -5.36 16 9 C 0.55 16.21 7.71 86.72 0.67 16.88 16 10 O -0.57 -19.62 12.83 -3.97 -0.05 -19.67 16 11 N -0.72 -21.37 2.73 -445.14 -1.21 -22.58 16 12 C 0.15 5.52 3.15 45.09 0.14 5.66 16 13 C -0.13 -4.61 5.49 30.88 0.17 -4.44 16 14 C 0.14 5.19 4.32 45.42 0.20 5.39 16 15 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 16 C -0.15 -4.47 5.64 31.58 0.18 -4.29 16 17 C -0.17 -5.43 5.76 31.58 0.18 -5.25 16 18 C 0.18 7.72 3.13 45.45 0.14 7.87 16 19 H 0.07 3.71 6.37 -2.39 -0.02 3.70 16 20 C -0.11 -4.76 5.41 30.90 0.17 -4.60 16 21 N -0.60 -28.11 2.82 -637.03 -1.80 -29.91 16 22 C -0.23 -12.16 10.38 84.03 0.87 -11.29 16 23 H 0.08 3.88 7.85 -2.91 -0.02 3.86 16 24 C -0.06 -3.02 5.42 84.86 0.46 -2.56 16 25 N -0.93 -52.92 10.59 21.65 0.23 -52.69 16 26 Si 0.97 44.42 29.56 68.60 2.03 46.45 16 27 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 28 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 29 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 1.96 5.96 -2.39 -0.01 1.95 16 32 H 0.09 1.19 8.06 -2.39 -0.02 1.17 16 33 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 34 H 0.43 1.61 9.06 -74.06 -0.67 0.94 16 35 H 0.17 3.34 5.87 -2.91 -0.02 3.32 16 36 H 0.43 11.47 0.22 -115.81 -0.03 11.44 16 37 H 0.08 2.92 6.89 -2.39 -0.02 2.90 16 38 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.10 2.46 4.72 -2.39 -0.01 2.45 16 42 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 43 H 0.09 2.69 5.27 -2.38 -0.01 2.68 16 44 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.05 2.33 7.99 -2.39 -0.02 2.32 16 46 H 0.25 13.75 8.31 -92.70 -0.77 12.97 16 Total: -1.00 -67.90 350.60 0.51 -67.39 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: 0.35 Total: 29.00 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 5.36 Total: 5.45 kcal Atomic # 7 Polarization: -114.47 SS G_CDS: -5.97 Total: -120.45 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -1.24 Total: -27.84 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -67.90 0.51 -67.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021375862.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.111 kcal (2) G-P(sol) polarization free energy of solvation -67.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds