Wall clock time and date at job start Tue Mar 31 2020 16:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38355 * 119.41048 * 2 1 4 4 C 1.38332 * 119.46230 * 179.97438 * 3 2 1 5 5 C 1.39992 * 118.34857 * 0.02562 * 4 3 2 6 6 C 1.47523 * 120.59899 * 179.97438 * 5 4 3 7 7 O 1.21589 * 119.99869 * 179.97438 * 6 5 4 8 8 N 1.34774 * 119.99925 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99992 * 180.02562 * 8 6 5 10 10 C 1.53142 * 109.43681 * 119.95855 * 9 8 6 11 11 C 1.53703 * 108.87492 * 66.17528 * 10 9 8 12 12 H 1.09004 * 112.09866 * 188.25421 * 11 10 9 13 13 C 1.54605 * 107.83497 * 312.22738 * 11 10 9 14 14 C 1.54314 * 104.75048 * 88.66831 * 13 11 10 15 15 C 1.54611 * 104.74695 * 0.02562 * 14 13 11 16 16 H 1.09005 * 112.18879 * 146.80107 * 15 14 13 17 17 C 1.53151 * 109.43391 * 240.18502 * 9 8 6 18 18 N 1.48284 * 104.26569 * 25.14027 * 15 14 13 19 19 C 1.36930 * 128.21566 * 138.42375 * 18 15 14 20 20 H 1.08001 * 120.00338 * 195.30035 * 19 18 15 21 21 C 1.38815 * 119.99930 * 15.30105 * 19 18 15 22 22 N 1.31624 * 119.99738 * 9.24377 * 21 19 18 23 23 Si 1.86800 * 120.00272 * 189.24306 * 21 19 18 24 24 H 1.48509 * 109.46904 * 60.00055 * 23 21 19 25 25 H 1.48495 * 109.47265 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47384 * 299.99991 * 23 21 19 27 27 C 1.40280 * 118.80198 * 359.97438 * 5 4 3 28 28 O 1.35430 * 119.79839 * 180.02562 * 27 5 4 29 29 N 1.31885 * 119.40322 * 179.72601 * 2 1 3 30 30 H 1.09000 * 109.47021 * 89.99538 * 1 2 3 31 31 H 1.08992 * 109.47187 * 210.00393 * 1 2 3 32 32 H 1.09006 * 109.46704 * 330.00361 * 1 2 3 33 33 H 1.08007 * 120.27139 * 359.95611 * 3 2 1 34 34 H 1.08000 * 120.82968 * 179.97438 * 4 3 2 35 35 H 0.97001 * 120.00042 * 359.97438 * 8 6 5 36 36 H 1.09001 * 109.43193 * 0.04685 * 9 8 6 37 37 H 1.09000 * 109.56745 * 185.99142 * 10 9 8 38 38 H 1.08998 * 109.57204 * 306.35530 * 10 9 8 39 39 H 1.08990 * 110.38294 * 207.48697 * 13 11 10 40 40 H 1.09001 * 110.37808 * 329.74133 * 13 11 10 41 41 H 1.08998 * 110.38132 * 118.81637 * 14 13 11 42 42 H 1.08999 * 110.38197 * 241.18141 * 14 13 11 43 43 H 1.08999 * 109.57256 * 53.63313 * 17 9 8 44 44 H 1.08994 * 109.57208 * 174.00352 * 17 9 8 45 45 H 0.96994 * 119.99942 * 180.02562 * 22 21 19 46 46 H 0.96698 * 114.00326 * 90.00322 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1865 1.2052 0.0000 4 6 3.5698 1.2065 0.0005 5 6 4.2356 -0.0249 0.0005 6 6 5.7098 -0.0815 0.0005 7 8 6.2769 -1.1571 0.0010 8 7 6.4279 1.0589 0.0010 9 6 7.8918 1.0028 0.0005 10 6 8.4282 1.7047 -1.2504 11 6 8.0970 3.2029 -1.1605 12 1 8.3261 3.7299 -2.0867 13 6 6.6080 3.3358 -0.7662 14 6 6.6084 3.3328 0.7770 15 6 8.0978 3.1991 1.1699 16 1 8.3296 3.7315 2.0924 17 6 8.4290 1.6999 1.2538 18 7 8.8335 3.7486 0.0056 19 6 9.9329 4.5649 0.0068 20 1 10.2188 5.0870 -0.8944 21 6 10.6800 4.7213 1.1662 22 7 10.4459 3.9525 2.2086 23 14 12.0175 6.0229 1.2472 24 1 11.4182 7.3631 1.0230 25 1 12.6627 5.9872 2.5841 26 1 13.0342 5.7537 0.1990 27 6 3.4758 -1.2041 0.0005 28 8 4.0991 -2.4064 0.0010 29 7 2.1545 -1.1490 0.0055 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.6412 2.1376 -0.0007 34 1 4.1224 2.1344 0.0001 35 1 5.9755 1.9170 0.0011 36 1 8.2148 -0.0383 -0.0012 37 1 9.5087 1.5725 -1.3082 38 1 7.9587 1.2795 -2.1374 39 1 6.1973 4.2721 -1.1439 40 1 6.0370 2.4898 -1.1489 41 1 6.1980 4.2678 1.1585 42 1 6.0379 2.4845 1.1551 43 1 7.9598 1.2714 2.1395 44 1 9.5094 1.5675 1.3106 45 1 10.9677 4.0621 3.0189 46 1 4.2798 -2.7555 0.8845 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021394250.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:35 Heat of formation + Delta-G solvation = 64.310757 kcal Electronic energy + Delta-G solvation = -29786.965709 eV Core-core repulsion = 25873.756750 eV Total energy + Delta-G solvation = -3913.208959 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.44693 -40.45954 -38.17400 -37.20729 -34.31707 -33.36404 -32.14993 -31.81373 -31.17240 -30.32491 -29.15266 -27.97938 -24.78130 -23.60328 -23.37982 -23.18098 -21.66780 -20.45201 -19.68663 -19.58352 -18.66780 -17.82872 -17.14004 -16.55641 -15.97217 -15.43776 -14.93869 -14.75448 -14.30500 -14.24858 -14.19157 -14.00542 -13.43940 -13.19753 -12.99206 -12.91955 -12.71904 -12.53021 -12.39639 -12.12008 -12.09032 -11.71836 -11.69767 -11.63280 -11.02600 -10.95065 -10.69863 -10.44550 -10.35925 -10.14804 -10.11298 -10.01038 -9.77534 -9.57142 -9.41820 -9.34393 -9.02182 -8.68026 -8.22611 -6.89574 -5.83814 -3.19109 0.42551 0.87950 2.88309 3.29966 3.35020 3.40592 3.40966 3.51932 3.71364 4.29494 4.38507 4.41596 4.62946 4.79736 5.04746 5.08197 5.16862 5.24426 5.27361 5.29510 5.33602 5.53675 5.57641 5.62985 5.68461 5.72039 5.75680 5.80118 5.90880 5.96857 6.09738 6.20392 6.22979 6.43911 6.47837 6.51062 6.59530 6.71730 6.82973 6.95357 7.07212 7.40544 7.45302 7.47431 7.65622 7.67087 7.84561 8.14913 8.50043 9.05996 9.68166 10.45936 11.28668 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024557 B = 0.003173 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.941367 B = 8823.223093 C = 9331.404936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.169 3.831 3 C -0.189 4.189 4 C -0.032 4.032 5 C -0.203 4.203 6 C 0.542 3.458 7 O -0.534 6.534 8 N -0.730 5.730 9 C 0.142 3.858 10 C -0.138 4.138 11 C 0.150 3.850 12 H 0.069 0.931 13 C -0.165 4.165 14 C -0.177 4.177 15 C 0.184 3.816 16 H 0.112 0.888 17 C -0.124 4.124 18 N -0.582 5.582 19 C -0.227 4.227 20 H 0.075 0.925 21 C -0.003 4.003 22 N -0.911 5.911 23 Si 0.911 3.089 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.372 3.628 28 O -0.459 6.459 29 N -0.510 5.510 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.425 0.575 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.043 0.957 44 H 0.087 0.913 45 H 0.254 0.746 46 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.844 -4.317 -2.536 18.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.031 3.969 3 C -0.209 4.209 4 C -0.058 4.058 5 C -0.210 4.210 6 C 0.327 3.673 7 O -0.412 6.412 8 N -0.403 5.403 9 C 0.039 3.961 10 C -0.179 4.179 11 C 0.042 3.958 12 H 0.087 0.913 13 C -0.204 4.204 14 C -0.216 4.216 15 C 0.076 3.924 16 H 0.130 0.870 17 C -0.164 4.164 18 N -0.303 5.303 19 C -0.355 4.355 20 H 0.093 0.907 21 C -0.200 4.200 22 N -0.557 5.557 23 Si 0.741 3.259 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.192 3.808 28 O -0.266 6.266 29 N -0.230 5.230 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.163 0.837 34 H 0.159 0.841 35 H 0.285 0.715 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.065 0.935 46 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -17.637 -5.654 -2.963 18.756 hybrid contribution 1.099 1.604 0.501 2.009 sum -16.537 -4.050 -2.462 17.203 Atomic orbital electron populations 1.20818 0.88188 1.03920 1.03563 1.21255 0.97031 0.87249 0.91404 1.21898 0.94409 0.99638 1.04985 1.21823 0.94705 0.97255 0.91969 1.21290 0.95728 0.94210 1.09774 1.18089 0.85901 0.85590 0.77672 1.90759 1.71553 1.29087 1.49847 1.48985 1.08885 1.09643 1.72783 1.21132 0.77728 1.00610 0.96672 1.22515 1.01504 0.98025 0.95853 1.21517 0.89877 0.91780 0.92621 0.91254 1.23319 0.99959 1.00764 0.96395 1.23487 1.02344 1.00688 0.95089 1.21478 0.85078 0.91737 0.94068 0.87030 1.22387 1.02313 0.97848 0.93830 1.45147 1.30741 1.54997 0.99387 1.18935 1.01450 1.17717 0.97378 0.90706 1.24841 0.98604 0.99394 0.97180 1.69844 1.42620 1.39176 1.04089 0.86229 0.81501 0.81359 0.76809 1.21232 1.21632 1.21103 1.19135 0.85980 0.85218 0.90473 1.84713 1.76387 1.31789 1.33728 1.67136 1.09432 1.30406 1.16050 0.89851 0.90116 0.90118 0.83701 0.84080 0.71496 0.89704 0.90635 0.93319 0.91893 0.90635 0.91983 0.90757 0.93803 0.89468 0.93545 0.73566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.16 36.01 0.37 -0.31 16 2 C 0.17 1.69 6.78 -82.52 -0.56 1.14 16 3 C -0.19 -1.71 9.71 -39.50 -0.38 -2.09 16 4 C -0.03 -0.35 9.64 -38.89 -0.37 -0.72 16 5 C -0.20 -2.85 5.90 -104.69 -0.62 -3.47 16 6 C 0.54 9.04 7.77 -12.48 -0.10 8.94 16 7 O -0.53 -10.46 14.52 -16.48 -0.24 -10.70 16 8 N -0.73 -11.74 2.73 -54.71 -0.15 -11.89 16 9 C 0.14 2.63 3.15 -67.78 -0.21 2.42 16 10 C -0.14 -2.55 5.49 -26.29 -0.14 -2.69 16 11 C 0.15 2.86 4.32 -65.72 -0.28 2.58 16 12 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 13 C -0.16 -2.59 5.71 -25.20 -0.14 -2.73 16 14 C -0.18 -2.96 5.72 -25.20 -0.14 -3.10 16 15 C 0.18 3.93 3.13 -65.70 -0.21 3.72 16 16 H 0.11 2.77 6.36 -51.93 -0.33 2.44 16 17 C -0.12 -2.54 5.41 -26.25 -0.14 -2.69 16 18 N -0.58 -13.41 2.82 -152.70 -0.43 -13.85 16 19 C -0.23 -5.87 10.38 -15.06 -0.16 -6.02 16 20 H 0.08 1.89 7.85 -52.49 -0.41 1.48 16 21 C 0.00 -0.08 5.42 -17.43 -0.09 -0.17 16 22 N -0.91 -24.74 10.60 55.49 0.59 -24.15 16 23 Si 0.91 21.05 29.56 -169.99 -5.03 16.02 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 27 C 0.37 5.28 7.77 -16.61 -0.13 5.15 16 28 O -0.46 -6.57 11.66 -39.75 -0.46 -7.03 16 29 N -0.51 -6.59 10.28 -9.20 -0.09 -6.68 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 33 H 0.15 0.83 8.06 -52.48 -0.42 0.41 16 34 H 0.14 1.36 6.02 -52.49 -0.32 1.04 16 35 H 0.43 6.14 0.17 -65.41 -0.01 6.13 16 36 H 0.08 1.67 6.89 -51.93 -0.36 1.31 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.07 5.04 -51.93 -0.26 0.81 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 1.13 5.04 -51.93 -0.26 0.87 16 43 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.09 2.07 8.00 -51.93 -0.42 1.66 16 45 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 46 H 0.40 4.13 9.06 45.56 0.41 4.54 16 LS Contribution 353.94 15.07 5.33 5.33 Total: -1.00 -31.55 353.94 -9.12 -40.67 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -5.31 Total: 12.33 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -3.32 Total: -0.05 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.09 Total: -56.57 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.70 Total: -17.73 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.55 -9.12 -40.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021394250.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.982 kcal (2) G-P(sol) polarization free energy of solvation -31.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds