Wall clock time and date at job start Tue Mar 31 2020 16:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38355 * 119.41048 * 2 1 4 4 C 1.38332 * 119.46230 * 179.97438 * 3 2 1 5 5 C 1.39992 * 118.34857 * 0.02562 * 4 3 2 6 6 C 1.47523 * 120.59899 * 179.97438 * 5 4 3 7 7 O 1.21589 * 119.99869 * 179.97438 * 6 5 4 8 8 N 1.34774 * 119.99925 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99992 * 180.02562 * 8 6 5 10 10 C 1.53142 * 109.43681 * 119.95855 * 9 8 6 11 11 C 1.53703 * 108.87492 * 66.17528 * 10 9 8 12 12 H 1.09004 * 112.09866 * 188.25421 * 11 10 9 13 13 C 1.54605 * 107.83497 * 312.22738 * 11 10 9 14 14 C 1.54314 * 104.75048 * 88.66831 * 13 11 10 15 15 C 1.54611 * 104.74695 * 0.02562 * 14 13 11 16 16 H 1.09005 * 112.18879 * 146.80107 * 15 14 13 17 17 C 1.53151 * 109.43391 * 240.18502 * 9 8 6 18 18 N 1.48284 * 104.26569 * 25.14027 * 15 14 13 19 19 C 1.36930 * 128.21566 * 138.42375 * 18 15 14 20 20 H 1.08001 * 120.00338 * 195.30035 * 19 18 15 21 21 C 1.38815 * 119.99930 * 15.30105 * 19 18 15 22 22 N 1.31624 * 119.99738 * 9.24377 * 21 19 18 23 23 Si 1.86800 * 120.00272 * 189.24306 * 21 19 18 24 24 H 1.48509 * 109.46904 * 60.00055 * 23 21 19 25 25 H 1.48495 * 109.47265 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47384 * 299.99991 * 23 21 19 27 27 C 1.40280 * 118.80198 * 359.97438 * 5 4 3 28 28 O 1.35430 * 119.79839 * 180.02562 * 27 5 4 29 29 N 1.31885 * 119.40322 * 179.72601 * 2 1 3 30 30 H 1.09000 * 109.47021 * 89.99538 * 1 2 3 31 31 H 1.08992 * 109.47187 * 210.00393 * 1 2 3 32 32 H 1.09006 * 109.46704 * 330.00361 * 1 2 3 33 33 H 1.08007 * 120.27139 * 359.95611 * 3 2 1 34 34 H 1.08000 * 120.82968 * 179.97438 * 4 3 2 35 35 H 0.97001 * 120.00042 * 359.97438 * 8 6 5 36 36 H 1.09001 * 109.43193 * 0.04685 * 9 8 6 37 37 H 1.09000 * 109.56745 * 185.99142 * 10 9 8 38 38 H 1.08998 * 109.57204 * 306.35530 * 10 9 8 39 39 H 1.08990 * 110.38294 * 207.48697 * 13 11 10 40 40 H 1.09001 * 110.37808 * 329.74133 * 13 11 10 41 41 H 1.08998 * 110.38132 * 118.81637 * 14 13 11 42 42 H 1.08999 * 110.38197 * 241.18141 * 14 13 11 43 43 H 1.08999 * 109.57256 * 53.63313 * 17 9 8 44 44 H 1.08994 * 109.57208 * 174.00352 * 17 9 8 45 45 H 0.96994 * 119.99942 * 180.02562 * 22 21 19 46 46 H 0.96698 * 114.00326 * 90.00322 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1865 1.2052 0.0000 4 6 3.5698 1.2065 0.0005 5 6 4.2356 -0.0249 0.0005 6 6 5.7098 -0.0815 0.0005 7 8 6.2769 -1.1571 0.0010 8 7 6.4279 1.0589 0.0010 9 6 7.8918 1.0028 0.0005 10 6 8.4282 1.7047 -1.2504 11 6 8.0970 3.2029 -1.1605 12 1 8.3261 3.7299 -2.0867 13 6 6.6080 3.3358 -0.7662 14 6 6.6084 3.3328 0.7770 15 6 8.0978 3.1991 1.1699 16 1 8.3296 3.7315 2.0924 17 6 8.4290 1.6999 1.2538 18 7 8.8335 3.7486 0.0056 19 6 9.9329 4.5649 0.0068 20 1 10.2188 5.0870 -0.8944 21 6 10.6800 4.7213 1.1662 22 7 10.4459 3.9525 2.2086 23 14 12.0175 6.0229 1.2472 24 1 11.4182 7.3631 1.0230 25 1 12.6627 5.9872 2.5841 26 1 13.0342 5.7537 0.1990 27 6 3.4758 -1.2041 0.0005 28 8 4.0991 -2.4064 0.0010 29 7 2.1545 -1.1490 0.0055 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.6412 2.1376 -0.0007 34 1 4.1224 2.1344 0.0001 35 1 5.9755 1.9170 0.0011 36 1 8.2148 -0.0383 -0.0012 37 1 9.5087 1.5725 -1.3082 38 1 7.9587 1.2795 -2.1374 39 1 6.1973 4.2721 -1.1439 40 1 6.0370 2.4898 -1.1489 41 1 6.1980 4.2678 1.1585 42 1 6.0379 2.4845 1.1551 43 1 7.9598 1.2714 2.1395 44 1 9.5094 1.5675 1.3106 45 1 10.9677 4.0621 3.0189 46 1 4.2798 -2.7555 0.8845 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021394250.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:34 Heat of formation + Delta-G solvation = 43.151074 kcal Electronic energy + Delta-G solvation = -29787.883261 eV Core-core repulsion = 25873.756750 eV Total energy + Delta-G solvation = -3914.126512 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.77928 -41.51205 -39.48349 -38.20331 -35.88955 -34.47758 -33.80113 -32.59676 -32.55536 -31.92385 -30.80885 -28.84329 -26.49962 -24.89677 -24.65958 -24.07986 -23.06483 -21.77053 -21.24741 -21.03777 -19.68911 -19.24436 -18.46533 -17.75090 -16.99233 -16.75308 -16.57426 -16.04247 -15.78884 -15.41553 -15.34783 -14.88079 -14.73716 -14.57048 -14.52306 -14.17482 -13.86151 -13.83987 -13.49392 -13.30194 -13.24207 -13.06726 -12.98568 -12.76241 -12.67281 -12.60185 -12.41717 -12.08858 -11.97181 -11.79049 -11.45306 -11.18506 -11.09313 -11.04877 -11.01274 -10.56961 -10.43715 -9.92979 -9.61483 -8.75302 -7.82128 -5.17024 -0.48438 0.05755 1.49842 1.50339 1.56682 1.81090 2.17038 2.47682 2.52140 2.74247 3.35273 3.49210 3.52032 3.63456 3.71614 3.89517 3.92757 3.95826 4.14490 4.21684 4.23659 4.32381 4.40678 4.42987 4.47351 4.66306 4.67105 4.76111 4.84014 4.91476 4.93413 4.97803 5.00168 5.07116 5.09690 5.16040 5.24104 5.27578 5.40593 5.51887 5.55583 5.56551 5.77147 5.82865 6.27928 6.48495 6.57127 6.82472 7.10877 7.21252 7.77345 8.57008 9.28562 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024557 B = 0.003173 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.941367 B = 8823.223093 C = 9331.404936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.166 3.834 3 C -0.174 4.174 4 C -0.029 4.029 5 C -0.226 4.226 6 C 0.542 3.458 7 O -0.571 6.571 8 N -0.720 5.720 9 C 0.154 3.846 10 C -0.132 4.132 11 C 0.141 3.859 12 H 0.076 0.924 13 C -0.152 4.152 14 C -0.165 4.165 15 C 0.177 3.823 16 H 0.073 0.927 17 C -0.113 4.113 18 N -0.602 5.602 19 C -0.233 4.233 20 H 0.077 0.923 21 C -0.056 4.056 22 N -0.935 5.935 23 Si 0.969 3.031 24 H -0.279 1.279 25 H -0.299 1.299 26 H -0.283 1.283 27 C 0.355 3.645 28 O -0.480 6.480 29 N -0.531 5.531 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.189 0.811 34 H 0.159 0.841 35 H 0.433 0.567 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.044 0.956 44 H 0.044 0.956 45 H 0.246 0.754 46 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.365 -2.664 -3.735 21.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.028 3.972 3 C -0.193 4.193 4 C -0.054 4.054 5 C -0.233 4.233 6 C 0.330 3.670 7 O -0.452 6.452 8 N -0.393 5.393 9 C 0.049 3.951 10 C -0.173 4.173 11 C 0.034 3.966 12 H 0.094 0.906 13 C -0.191 4.191 14 C -0.205 4.205 15 C 0.070 3.930 16 H 0.091 0.909 17 C -0.154 4.154 18 N -0.323 5.323 19 C -0.362 4.362 20 H 0.094 0.906 21 C -0.250 4.250 22 N -0.582 5.582 23 Si 0.798 3.202 24 H -0.206 1.206 25 H -0.225 1.225 26 H -0.209 1.209 27 C 0.175 3.825 28 O -0.289 6.289 29 N -0.252 5.252 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.129 0.871 33 H 0.207 0.793 34 H 0.177 0.823 35 H 0.295 0.705 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.094 0.906 42 H 0.111 0.889 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -21.199 -3.987 -4.184 21.973 hybrid contribution 2.100 1.048 0.860 2.500 sum -19.099 -2.940 -3.324 19.607 Atomic orbital electron populations 1.20975 0.85389 1.05251 1.04742 1.22047 0.98856 0.86916 0.89365 1.22356 0.93592 1.00950 1.02446 1.22065 0.95789 0.96462 0.91133 1.21048 0.93684 0.95679 1.12887 1.18521 0.87212 0.84831 0.76423 1.90739 1.72633 1.30372 1.51419 1.48773 1.07431 1.10113 1.72989 1.20776 0.79408 0.99283 0.95622 1.22427 1.00206 0.98109 0.96514 1.21770 0.91649 0.91445 0.91725 0.90597 1.23223 0.97518 1.03082 0.95269 1.23356 0.98725 1.02288 0.96083 1.21384 0.88185 0.91002 0.92450 0.90879 1.22192 0.99742 0.98280 0.95148 1.45343 1.30595 1.55058 1.01353 1.19246 1.02095 1.17622 0.97232 0.90559 1.25518 1.00849 1.01381 0.97281 1.70042 1.43444 1.40574 1.04189 0.85307 0.79292 0.79506 0.76071 1.20551 1.22548 1.20893 1.19301 0.86667 0.85087 0.91411 1.84657 1.76769 1.32476 1.35004 1.67207 1.08770 1.32185 1.17058 0.88516 0.90569 0.87069 0.79342 0.82316 0.70477 0.91253 0.93086 0.91143 0.89436 0.88395 0.90621 0.88899 0.93721 0.93689 0.94529 0.72371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.16 71.24 0.72 -0.16 16 2 C 0.17 2.73 6.78 42.58 0.29 3.02 16 3 C -0.17 -2.28 9.71 22.32 0.22 -2.06 16 4 C -0.03 -0.52 9.64 22.72 0.22 -0.30 16 5 C -0.23 -5.94 5.90 -19.91 -0.12 -6.06 16 6 C 0.54 17.65 7.77 86.69 0.67 18.32 16 7 O -0.57 -22.71 14.52 16.82 0.24 -22.47 16 8 N -0.72 -22.03 2.73 -445.25 -1.22 -23.25 16 9 C 0.15 5.73 3.15 45.09 0.14 5.88 16 10 C -0.13 -4.81 5.49 30.88 0.17 -4.64 16 11 C 0.14 5.16 4.32 45.42 0.20 5.36 16 12 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 13 C -0.15 -4.23 5.71 31.59 0.18 -4.05 16 14 C -0.17 -5.13 5.72 31.59 0.18 -4.94 16 15 C 0.18 7.64 3.13 45.46 0.14 7.78 16 16 H 0.07 3.75 6.36 -2.38 -0.02 3.73 16 17 C -0.11 -4.84 5.41 30.90 0.17 -4.67 16 18 N -0.60 -27.85 2.82 -637.03 -1.80 -29.65 16 19 C -0.23 -12.19 10.38 84.04 0.87 -11.32 16 20 H 0.08 3.87 7.85 -2.91 -0.02 3.84 16 21 C -0.06 -3.01 5.42 84.86 0.46 -2.55 16 22 N -0.93 -52.87 10.60 21.65 0.23 -52.64 16 23 Si 0.97 44.14 29.56 68.60 2.03 46.17 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 25 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 26 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 27 C 0.35 9.80 7.77 85.13 0.66 10.46 16 28 O -0.48 -14.02 11.66 -66.44 -0.77 -14.80 16 29 N -0.53 -12.81 10.28 -296.04 -3.04 -15.85 16 30 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.11 0.28 8.07 -2.38 -0.02 0.26 16 33 H 0.19 0.82 8.06 -2.91 -0.02 0.80 16 34 H 0.16 2.22 6.02 -2.91 -0.02 2.20 16 35 H 0.43 11.25 0.17 -115.81 -0.02 11.23 16 36 H 0.07 2.83 6.89 -2.39 -0.02 2.81 16 37 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.10 2.34 5.04 -2.39 -0.01 2.33 16 41 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.09 2.55 5.04 -2.39 -0.01 2.53 16 43 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.04 2.28 8.00 -2.39 -0.02 2.26 16 45 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 46 H 0.41 8.97 9.06 -74.06 -0.67 8.30 16 Total: -1.00 -72.71 353.94 1.19 -71.52 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: 0.35 Total: 30.91 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 5.18 Total: 10.06 kcal Atomic # 7 Polarization: -115.57 SS G_CDS: -5.83 Total: -121.39 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -0.53 Total: -37.26 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -72.71 1.19 -71.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021394250.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.668 kcal (2) G-P(sol) polarization free energy of solvation -72.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds