Wall clock time and date at job start Tue Mar 31 2020 17:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37999 * 120.81823 * 2 1 4 4 C 1.39129 * 119.26157 * 179.97438 * 3 2 1 5 5 O 1.35499 * 119.52082 * 179.97438 * 4 3 2 6 6 N 1.32430 * 120.95395 * 0.02562 * 4 3 2 7 7 C 1.31639 * 121.79806 * 359.72663 * 6 4 3 8 8 C 1.39571 * 120.62529 * 0.53847 * 7 6 4 9 9 C 1.47612 * 120.49839 * 179.75091 * 8 7 6 10 10 O 1.21579 * 120.00071 * 223.49464 * 9 8 7 11 11 N 1.34776 * 120.00147 * 43.49856 * 9 8 7 12 12 C 1.47216 * 126.69976 * 355.20524 * 11 9 8 13 13 C 1.53782 * 106.37976 * 148.74514 * 12 11 9 14 14 H 1.08993 * 111.70579 * 257.23087 * 13 12 11 15 15 C 1.54327 * 109.06304 * 132.42298 * 13 12 11 16 16 C 1.55057 * 103.93369 * 222.03379 * 15 13 12 17 17 C 1.55049 * 102.11351 * 40.05583 * 16 15 13 18 18 H 1.09004 * 110.65305 * 78.61514 * 17 16 15 19 19 N 1.46501 * 110.53788 * 201.32915 * 17 16 15 20 20 C 1.36935 * 119.99874 * 269.52004 * 19 17 16 21 21 H 1.07999 * 119.99973 * 359.97438 * 20 19 17 22 22 C 1.38811 * 119.99766 * 180.27496 * 20 19 17 23 23 N 1.31620 * 119.99810 * 359.72029 * 22 20 19 24 24 Si 1.86800 * 120.00190 * 179.72633 * 22 20 19 25 25 H 1.48501 * 109.47111 * 59.99461 * 24 22 20 26 26 H 1.48494 * 109.47198 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46928 * 299.99703 * 24 22 20 28 28 C 1.54322 * 103.93810 * 319.94412 * 17 16 15 29 29 H 1.08998 * 111.69662 * 261.92447 * 28 17 16 30 30 C 1.47217 * 126.70318 * 175.23143 * 11 9 8 31 31 H 1.08999 * 109.47156 * 264.41395 * 1 2 3 32 32 H 1.08997 * 109.47664 * 24.41462 * 1 2 3 33 33 H 1.08998 * 109.47508 * 144.41401 * 1 2 3 34 34 H 1.07998 * 120.36950 * 359.96177 * 3 2 1 35 35 H 0.96706 * 114.00232 * 90.00372 * 5 4 3 36 36 H 1.07998 * 119.69162 * 180.26814 * 7 6 4 37 37 H 1.09007 * 110.07138 * 267.96973 * 12 11 9 38 38 H 1.08998 * 110.07874 * 29.45531 * 12 11 9 39 39 H 1.09001 * 110.53308 * 340.64303 * 15 13 12 40 40 H 1.08994 * 110.53227 * 103.27712 * 15 13 12 41 41 H 1.09007 * 110.89901 * 281.85472 * 16 15 13 42 42 H 1.08998 * 110.90107 * 158.26197 * 16 15 13 43 43 H 0.97001 * 120.00023 * 89.51397 * 19 17 16 44 44 H 0.97008 * 119.99611 * 179.97438 * 23 22 20 45 45 H 1.08998 * 110.07079 * 92.02770 * 30 11 9 46 46 H 1.08991 * 110.11736 * 330.51315 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2139 1.1851 0.0000 4 6 3.6047 1.1473 0.0005 5 8 4.3042 2.3078 0.0000 6 7 4.2548 -0.0065 0.0005 7 6 3.6205 -1.1600 0.0054 8 6 2.2255 -1.2043 -0.0006 9 6 1.5172 -2.4994 -0.0006 10 8 0.5585 -2.6679 -0.7291 11 7 1.9331 -3.4951 0.8069 12 6 3.1259 -3.4879 1.6698 13 6 2.7848 -4.3617 2.8883 14 1 2.5522 -3.7576 3.7652 15 6 3.9463 -5.3452 3.1443 16 6 3.2363 -6.6840 3.4727 17 6 2.0641 -6.6882 2.4579 18 1 2.4135 -6.9818 1.4680 19 7 0.9958 -7.5827 2.9104 20 6 0.9983 -8.8986 2.5316 21 1 1.7876 -9.2769 1.8990 22 6 -0.0170 -9.7449 2.9557 23 7 -0.9792 -9.2836 3.7263 24 14 -0.0178 -11.5382 2.4328 25 1 1.2227 -12.1955 2.9169 26 1 -1.2005 -12.2227 3.0139 27 1 -0.0765 -11.6218 0.9513 28 6 1.5762 -5.2242 2.4475 29 1 0.7076 -5.0843 3.0910 30 6 1.2838 -4.8024 0.9979 31 1 -0.3633 -0.1000 1.0228 32 1 -0.3634 0.9357 -0.4247 33 1 -0.3634 -0.8357 -0.5980 34 1 1.6934 2.1314 -0.0006 35 1 4.5069 2.6453 0.8833 36 1 4.1849 -2.0807 0.0096 37 1 3.9774 -3.9083 1.1345 38 1 3.3505 -2.4703 1.9892 39 1 4.5634 -5.4486 2.2517 40 1 4.5497 -5.0127 3.9888 41 1 2.8639 -6.6856 4.4971 42 1 3.9023 -7.5296 3.3011 43 1 0.2866 -7.2429 3.4783 44 1 -1.6890 -9.8750 4.0224 45 1 1.7013 -5.5324 0.3044 46 1 0.2085 -4.7130 0.8439 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026358433.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:50 Heat of formation + Delta-G solvation = -23.430016 kcal Electronic energy + Delta-G solvation = -28417.946310 eV Core-core repulsion = 24500.932626 eV Total energy + Delta-G solvation = -3917.013684 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.28482 -40.12258 -38.61962 -37.31687 -35.38650 -34.16992 -33.43047 -31.42904 -30.99751 -29.31078 -28.58155 -28.15686 -25.24361 -24.92676 -23.30649 -22.96541 -22.48698 -20.44508 -19.65173 -19.22959 -18.79456 -17.88865 -17.31335 -16.98480 -16.36660 -16.17922 -15.50890 -15.20930 -14.80740 -14.46591 -14.26788 -14.19771 -13.80483 -13.49693 -13.28275 -13.20200 -13.03557 -12.93446 -12.66112 -12.43798 -12.37958 -12.08979 -11.95247 -11.68503 -11.21961 -10.95882 -10.79115 -10.74994 -10.43948 -10.40515 -10.25919 -10.20636 -9.99980 -9.92558 -9.71014 -9.62946 -9.33255 -8.90310 -8.74187 -6.98582 -5.79788 -3.08730 0.27519 0.75508 2.46072 2.78147 3.13268 3.33847 3.42545 3.47456 3.48011 4.11629 4.19350 4.29399 4.48586 4.58261 4.58722 4.72830 4.80059 4.85826 5.04344 5.20055 5.24151 5.34254 5.34801 5.37220 5.39355 5.50688 5.55829 5.64897 5.71296 5.80507 5.89546 5.92119 5.95373 5.99888 6.06717 6.13510 6.19733 6.27521 6.35754 6.49198 6.59389 6.75391 6.98715 7.00815 7.40219 7.44263 7.67188 7.98457 8.38653 9.49940 10.06704 10.40621 11.42605 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.022870 B = 0.002589 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.012200 B =10813.239198 C =11532.103829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.028 3.972 3 C -0.194 4.194 4 C 0.330 3.670 5 O -0.481 6.481 6 N -0.508 5.508 7 C 0.161 3.839 8 C -0.191 4.191 9 C 0.582 3.418 10 O -0.529 6.529 11 N -0.608 5.608 12 C 0.098 3.902 13 C -0.098 4.098 14 H 0.086 0.914 15 C -0.116 4.116 16 C -0.143 4.143 17 C 0.184 3.816 18 H 0.059 0.941 19 N -0.720 5.720 20 C -0.241 4.241 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.107 4.107 29 H 0.090 0.910 30 C 0.116 3.884 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.147 0.853 35 H 0.404 0.596 36 H 0.167 0.833 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.384 0.616 44 H 0.256 0.744 45 H 0.075 0.925 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.604 22.187 -2.868 24.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.020 3.980 3 C -0.215 4.215 4 C 0.152 3.848 5 O -0.289 6.289 6 N -0.227 5.227 7 C 0.003 3.997 8 C -0.196 4.196 9 C 0.369 3.631 10 O -0.407 6.407 11 N -0.341 5.341 12 C -0.025 4.025 13 C -0.118 4.118 14 H 0.104 0.896 15 C -0.155 4.155 16 C -0.184 4.184 17 C 0.073 3.927 18 H 0.077 0.923 19 N -0.360 5.360 20 C -0.372 4.372 21 H 0.088 0.912 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.127 4.127 29 H 0.109 0.891 30 C -0.006 4.006 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.165 0.835 35 H 0.262 0.738 36 H 0.184 0.816 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.218 0.782 44 H 0.066 0.934 45 H 0.094 0.906 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.915 22.009 -4.012 24.470 hybrid contribution -0.912 -0.744 0.511 1.283 sum 9.003 21.264 -3.501 23.356 Atomic orbital electron populations 1.21173 0.89010 1.05212 1.04067 1.20263 0.97466 0.90576 0.89735 1.21965 0.93738 0.99476 1.06333 1.19346 0.87088 0.85245 0.93144 1.84727 1.75954 1.34064 1.34134 1.67192 1.41897 0.98188 1.15459 1.22846 0.90132 0.95353 0.91380 1.20841 0.95346 0.94394 1.09045 1.17508 0.83455 0.82261 0.79837 1.90770 1.28159 1.81566 1.40184 1.48598 1.27254 1.15904 1.42311 1.22543 0.87919 1.00685 0.91335 1.22550 0.96353 0.96185 0.96696 0.89565 1.22491 0.96013 0.95931 1.01027 1.23302 0.98731 0.94996 1.01334 1.21247 0.88820 0.86812 0.95833 0.92331 1.42429 1.26855 1.06890 1.59796 1.19183 1.06892 0.85821 1.25332 0.91220 1.24738 0.97422 0.98258 1.00374 1.69648 1.14049 1.35106 1.39241 0.86287 0.76862 0.85075 0.78073 1.21268 1.21720 1.21243 1.22945 0.97823 0.97088 0.94829 0.89120 1.22255 0.99078 0.82405 0.96828 0.90070 0.90691 0.87739 0.83506 0.73780 0.81573 0.90627 0.90917 0.91585 0.92096 0.91528 0.92060 0.78180 0.93431 0.90649 0.90117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.58 36.00 0.34 -0.95 16 2 C 0.03 0.28 5.94 -103.96 -0.62 -0.33 16 3 C -0.19 -1.68 9.70 -39.34 -0.38 -2.06 16 4 C 0.33 3.19 7.74 -16.96 -0.13 3.06 16 5 O -0.48 -3.75 13.55 -18.19 -0.25 -4.00 16 6 N -0.51 -5.61 10.37 -12.96 -0.13 -5.75 16 7 C 0.16 1.68 9.06 -17.14 -0.16 1.53 16 8 C -0.19 -2.20 5.36 -104.82 -0.56 -2.76 16 9 C 0.58 8.04 7.11 -12.44 -0.09 7.95 16 10 O -0.53 -8.98 14.93 5.30 0.08 -8.90 16 11 N -0.61 -7.84 3.32 -172.78 -0.57 -8.42 16 12 C 0.10 1.00 4.94 -3.24 -0.02 0.98 16 13 C -0.10 -1.13 3.91 -88.52 -0.35 -1.48 16 14 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 15 C -0.12 -1.34 6.35 -24.95 -0.16 -1.50 16 16 C -0.14 -2.25 6.60 -24.56 -0.16 -2.42 16 17 C 0.18 3.30 3.03 -66.15 -0.20 3.10 16 18 H 0.06 1.08 7.13 -51.93 -0.37 0.71 16 19 N -0.72 -16.99 5.21 -51.71 -0.27 -17.26 16 20 C -0.24 -6.44 9.96 -15.06 -0.15 -6.59 16 21 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 23 N -0.93 -27.55 13.06 55.49 0.72 -26.83 16 24 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 C -0.11 -1.58 3.61 -88.53 -0.32 -1.90 16 29 H 0.09 1.47 7.80 -51.93 -0.41 1.06 16 30 C 0.12 1.73 6.52 -3.25 -0.02 1.71 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 33 H 0.10 1.25 5.69 -51.93 -0.30 0.95 16 34 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.40 1.02 9.06 45.56 0.41 1.44 16 36 H 0.17 1.45 6.47 -52.49 -0.34 1.11 16 37 H 0.08 0.68 6.79 -51.92 -0.35 0.32 16 38 H 0.07 0.64 6.43 -51.93 -0.33 0.31 16 39 H 0.07 0.69 7.19 -51.93 -0.37 0.32 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 1.14 8.14 -51.92 -0.42 0.71 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.38 9.72 7.61 -40.82 -0.31 9.41 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.08 1.16 7.13 -51.93 -0.37 0.79 16 46 H 0.08 1.33 7.97 -51.93 -0.41 0.92 16 LS Contribution 368.45 15.07 5.55 5.55 Total: -1.00 -33.11 368.45 -8.61 -41.71 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -5.65 Total: 8.97 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -3.06 Total: -2.09 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -0.25 Total: -58.25 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.17 Total: -12.90 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.11 -8.61 -41.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026358433.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.281 kcal (2) G-P(sol) polarization free energy of solvation -33.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds