Wall clock time and date at job start Tue Mar 31 2020 17:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37999 * 120.81823 * 2 1 4 4 C 1.39129 * 119.26157 * 179.97438 * 3 2 1 5 5 O 1.35499 * 119.52082 * 179.97438 * 4 3 2 6 6 N 1.32430 * 120.95395 * 0.02562 * 4 3 2 7 7 C 1.31639 * 121.79806 * 359.72663 * 6 4 3 8 8 C 1.39571 * 120.62529 * 0.53847 * 7 6 4 9 9 C 1.47612 * 120.49839 * 179.75091 * 8 7 6 10 10 O 1.21579 * 120.00071 * 223.49464 * 9 8 7 11 11 N 1.34776 * 120.00147 * 43.49856 * 9 8 7 12 12 C 1.47216 * 126.69976 * 355.20524 * 11 9 8 13 13 C 1.53782 * 106.37976 * 148.74514 * 12 11 9 14 14 H 1.08993 * 111.70579 * 257.23087 * 13 12 11 15 15 C 1.54327 * 109.06304 * 132.42298 * 13 12 11 16 16 C 1.55057 * 103.93369 * 222.03379 * 15 13 12 17 17 C 1.55049 * 102.11351 * 40.05583 * 16 15 13 18 18 H 1.09004 * 110.65305 * 78.61514 * 17 16 15 19 19 N 1.46501 * 110.53788 * 201.32915 * 17 16 15 20 20 C 1.36935 * 119.99874 * 269.52004 * 19 17 16 21 21 H 1.07999 * 119.99973 * 359.97438 * 20 19 17 22 22 C 1.38811 * 119.99766 * 180.27496 * 20 19 17 23 23 N 1.31620 * 119.99810 * 359.72029 * 22 20 19 24 24 Si 1.86800 * 120.00190 * 179.72633 * 22 20 19 25 25 H 1.48501 * 109.47111 * 59.99461 * 24 22 20 26 26 H 1.48494 * 109.47198 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46928 * 299.99703 * 24 22 20 28 28 C 1.54322 * 103.93810 * 319.94412 * 17 16 15 29 29 H 1.08998 * 111.69662 * 261.92447 * 28 17 16 30 30 C 1.47217 * 126.70318 * 175.23143 * 11 9 8 31 31 H 1.08999 * 109.47156 * 264.41395 * 1 2 3 32 32 H 1.08997 * 109.47664 * 24.41462 * 1 2 3 33 33 H 1.08998 * 109.47508 * 144.41401 * 1 2 3 34 34 H 1.07998 * 120.36950 * 359.96177 * 3 2 1 35 35 H 0.96706 * 114.00232 * 90.00372 * 5 4 3 36 36 H 1.07998 * 119.69162 * 180.26814 * 7 6 4 37 37 H 1.09007 * 110.07138 * 267.96973 * 12 11 9 38 38 H 1.08998 * 110.07874 * 29.45531 * 12 11 9 39 39 H 1.09001 * 110.53308 * 340.64303 * 15 13 12 40 40 H 1.08994 * 110.53227 * 103.27712 * 15 13 12 41 41 H 1.09007 * 110.89901 * 281.85472 * 16 15 13 42 42 H 1.08998 * 110.90107 * 158.26197 * 16 15 13 43 43 H 0.97001 * 120.00023 * 89.51397 * 19 17 16 44 44 H 0.97008 * 119.99611 * 179.97438 * 23 22 20 45 45 H 1.08998 * 110.07079 * 92.02770 * 30 11 9 46 46 H 1.08991 * 110.11736 * 330.51315 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2139 1.1851 0.0000 4 6 3.6047 1.1473 0.0005 5 8 4.3042 2.3078 0.0000 6 7 4.2548 -0.0065 0.0005 7 6 3.6205 -1.1600 0.0054 8 6 2.2255 -1.2043 -0.0006 9 6 1.5172 -2.4994 -0.0006 10 8 0.5585 -2.6679 -0.7291 11 7 1.9331 -3.4951 0.8069 12 6 3.1259 -3.4879 1.6698 13 6 2.7848 -4.3617 2.8883 14 1 2.5522 -3.7576 3.7652 15 6 3.9463 -5.3452 3.1443 16 6 3.2363 -6.6840 3.4727 17 6 2.0641 -6.6882 2.4579 18 1 2.4135 -6.9818 1.4680 19 7 0.9958 -7.5827 2.9104 20 6 0.9983 -8.8986 2.5316 21 1 1.7876 -9.2769 1.8990 22 6 -0.0170 -9.7449 2.9557 23 7 -0.9792 -9.2836 3.7263 24 14 -0.0178 -11.5382 2.4328 25 1 1.2227 -12.1955 2.9169 26 1 -1.2005 -12.2227 3.0139 27 1 -0.0765 -11.6218 0.9513 28 6 1.5762 -5.2242 2.4475 29 1 0.7076 -5.0843 3.0910 30 6 1.2838 -4.8024 0.9979 31 1 -0.3633 -0.1000 1.0228 32 1 -0.3634 0.9357 -0.4247 33 1 -0.3634 -0.8357 -0.5980 34 1 1.6934 2.1314 -0.0006 35 1 4.5069 2.6453 0.8833 36 1 4.1849 -2.0807 0.0096 37 1 3.9774 -3.9083 1.1345 38 1 3.3505 -2.4703 1.9892 39 1 4.5634 -5.4486 2.2517 40 1 4.5497 -5.0127 3.9888 41 1 2.8639 -6.6856 4.4971 42 1 3.9023 -7.5296 3.3011 43 1 0.2866 -7.2429 3.4783 44 1 -1.6890 -9.8750 4.0224 45 1 1.7013 -5.5324 0.3044 46 1 0.2085 -4.7130 0.8439 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026358433.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:49 Heat of formation + Delta-G solvation = -48.925662 kcal Electronic energy + Delta-G solvation = -28419.051884 eV Core-core repulsion = 24500.932626 eV Total energy + Delta-G solvation = -3918.119258 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.14958 -41.09965 -39.69177 -38.02434 -36.77471 -35.15244 -34.84862 -32.74315 -32.27687 -30.42707 -29.85822 -28.94624 -26.75407 -25.85765 -24.67831 -24.17509 -23.29987 -21.64727 -20.70349 -20.44890 -19.45691 -19.14275 -18.70993 -18.02512 -17.41262 -16.95434 -16.83556 -16.40035 -15.93731 -15.61412 -15.53508 -15.27816 -14.84489 -14.74355 -14.46471 -14.33598 -14.09131 -13.75355 -13.70883 -13.50309 -13.26716 -13.16622 -13.10275 -12.89928 -12.73546 -12.56306 -12.37376 -12.11584 -11.99354 -11.68530 -11.56880 -11.49042 -11.39691 -11.18504 -10.85256 -10.66867 -10.50292 -10.09229 -9.80628 -8.95118 -7.92669 -5.19857 -0.48266 0.03362 1.47394 1.48050 1.49917 1.55672 1.79838 2.42898 2.57430 2.61310 3.22157 3.40419 3.41927 3.51499 3.54454 3.69647 3.73399 3.92471 4.05656 4.16831 4.18201 4.34221 4.37385 4.46467 4.47633 4.57223 4.62307 4.63996 4.66258 4.66474 4.70498 4.85152 4.90277 4.98570 5.06244 5.08334 5.18320 5.22544 5.28661 5.37079 5.41817 5.48660 5.53233 5.64184 6.30034 6.40252 6.52678 6.76217 6.93737 7.35940 8.13868 8.34991 9.30717 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.022870 B = 0.002589 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.012200 B =10813.239198 C =11532.103829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.021 3.979 3 C -0.185 4.185 4 C 0.333 3.667 5 O -0.487 6.487 6 N -0.527 5.527 7 C 0.167 3.833 8 C -0.207 4.207 9 C 0.581 3.419 10 O -0.571 6.571 11 N -0.606 5.606 12 C 0.099 3.901 13 C -0.088 4.088 14 H 0.101 0.899 15 C -0.101 4.101 16 C -0.139 4.139 17 C 0.175 3.825 18 H 0.054 0.946 19 N -0.734 5.734 20 C -0.235 4.235 21 H 0.075 0.925 22 C -0.077 4.077 23 N -0.970 5.970 24 Si 0.968 3.032 25 H -0.277 1.277 26 H -0.298 1.298 27 H -0.281 1.281 28 C -0.100 4.100 29 H 0.072 0.928 30 C 0.121 3.879 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.175 0.825 35 H 0.427 0.573 36 H 0.182 0.818 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.050 0.950 42 H 0.054 0.946 43 H 0.372 0.628 44 H 0.249 0.751 45 H 0.068 0.932 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.284 24.457 -2.926 27.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.013 3.987 3 C -0.206 4.206 4 C 0.155 3.845 5 O -0.298 6.298 6 N -0.246 5.246 7 C 0.009 3.991 8 C -0.213 4.213 9 C 0.370 3.630 10 O -0.452 6.452 11 N -0.337 5.337 12 C -0.022 4.022 13 C -0.108 4.108 14 H 0.119 0.881 15 C -0.139 4.139 16 C -0.179 4.179 17 C 0.066 3.934 18 H 0.072 0.928 19 N -0.373 5.373 20 C -0.367 4.367 21 H 0.093 0.907 22 C -0.269 4.269 23 N -0.621 5.621 24 Si 0.797 3.203 25 H -0.203 1.203 26 H -0.225 1.225 27 H -0.207 1.207 28 C -0.120 4.120 29 H 0.091 0.909 30 C -0.002 4.002 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.192 0.808 35 H 0.289 0.711 36 H 0.199 0.801 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.203 0.797 44 H 0.058 0.942 45 H 0.086 0.914 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.681 24.323 -4.059 27.729 hybrid contribution -1.689 -1.324 0.501 2.203 sum 10.992 22.999 -3.558 25.738 Atomic orbital electron populations 1.21133 0.88827 1.05222 1.04001 1.20441 0.97805 0.90843 0.89662 1.22154 0.93426 0.99893 1.05131 1.19550 0.87584 0.85423 0.91978 1.84681 1.75690 1.33202 1.36245 1.67256 1.42287 0.98682 1.16383 1.22999 0.89552 0.95927 0.90664 1.20692 0.95885 0.93321 1.11380 1.17920 0.82950 0.83009 0.79093 1.90752 1.30123 1.82331 1.41960 1.48599 1.27836 1.14802 1.42477 1.22739 0.87199 1.01935 0.90334 1.22546 0.94426 0.95901 0.97913 0.88086 1.22444 0.95827 0.92713 1.02951 1.23123 0.97759 0.97650 0.99400 1.21522 0.88355 0.87546 0.96000 0.92849 1.42635 1.28073 1.06806 1.59797 1.19573 1.06180 0.87162 1.23780 0.90674 1.25501 0.97724 1.02196 1.01489 1.69805 1.14931 1.36103 1.41301 0.85292 0.76660 0.80621 0.77700 1.20300 1.22473 1.20699 1.22746 0.98870 0.95797 0.94598 0.90908 1.22010 0.97716 0.83690 0.96751 0.89570 0.88240 0.90712 0.80758 0.71065 0.80086 0.88383 0.88599 0.89673 0.89456 0.93151 0.92758 0.79655 0.94197 0.91368 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.58 71.23 0.68 -1.73 16 2 C 0.02 0.39 5.94 -19.44 -0.12 0.27 16 3 C -0.19 -2.65 9.70 22.43 0.22 -2.44 16 4 C 0.33 5.40 7.74 84.82 0.66 6.06 16 5 O -0.49 -5.95 13.55 -88.00 -1.19 -7.14 16 6 N -0.53 -10.12 10.37 -307.80 -3.19 -13.31 16 7 C 0.17 3.06 9.06 85.04 0.77 3.83 16 8 C -0.21 -4.47 5.36 -19.99 -0.11 -4.57 16 9 C 0.58 15.95 7.11 86.72 0.62 16.57 16 10 O -0.57 -20.15 14.93 -3.97 -0.06 -20.21 16 11 N -0.61 -15.14 3.32 -818.81 -2.72 -17.86 16 12 C 0.10 1.72 4.94 86.51 0.43 2.15 16 13 C -0.09 -1.81 3.91 -9.44 -0.04 -1.85 16 14 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 15 C -0.10 -1.99 6.35 31.75 0.20 -1.79 16 16 C -0.14 -4.23 6.60 32.00 0.21 -4.02 16 17 C 0.17 6.32 3.03 46.14 0.14 6.46 16 18 H 0.05 1.99 7.13 -2.38 -0.02 1.97 16 19 N -0.73 -35.75 5.21 -317.51 -1.65 -37.41 16 20 C -0.23 -12.78 9.96 84.03 0.84 -11.94 16 21 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 22 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 23 N -0.97 -59.32 13.06 21.65 0.28 -59.03 16 24 Si 0.97 46.13 29.55 68.60 2.03 48.16 16 25 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 26 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 27 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 28 C -0.10 -2.98 3.61 -9.44 -0.03 -3.01 16 29 H 0.07 2.45 7.80 -2.39 -0.02 2.43 16 30 C 0.12 3.70 6.52 86.51 0.56 4.27 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 32 H 0.10 1.21 8.07 -2.39 -0.02 1.19 16 33 H 0.07 1.84 5.69 -2.39 -0.01 1.82 16 34 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 35 H 0.43 0.63 9.06 -74.05 -0.67 -0.04 16 36 H 0.18 2.59 6.47 -2.91 -0.02 2.57 16 37 H 0.10 1.33 6.79 -2.38 -0.02 1.31 16 38 H 0.10 1.31 6.43 -2.39 -0.02 1.29 16 39 H 0.08 1.41 7.19 -2.39 -0.02 1.39 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.37 19.69 7.61 -92.71 -0.71 18.98 16 44 H 0.25 14.90 8.31 -92.70 -0.77 14.13 16 45 H 0.07 2.17 7.13 -2.39 -0.02 2.15 16 46 H 0.05 1.92 7.97 -2.39 -0.02 1.90 16 Total: -1.00 -74.71 368.45 -1.35 -76.06 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: -0.34 Total: 26.43 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 5.50 Total: 4.32 kcal Atomic # 7 Polarization: -120.33 SS G_CDS: -7.28 Total: -127.61 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -1.25 Total: -27.35 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -74.71 -1.35 -76.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026358433.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.132 kcal (2) G-P(sol) polarization free energy of solvation -74.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds