Wall clock time and date at job start Tue Mar 31 2020 17:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38004 * 120.81606 * 2 1 4 4 C 1.39121 * 119.26443 * 180.02562 * 3 2 1 5 5 O 1.35497 * 119.52631 * 179.97438 * 4 3 2 6 6 N 1.32437 * 120.94674 * 359.97438 * 4 3 2 7 7 C 1.31639 * 121.80536 * 359.72231 * 6 4 3 8 8 C 1.39566 * 120.61969 * 0.54344 * 7 6 4 9 9 C 1.47613 * 120.49765 * 179.74430 * 8 7 6 10 10 O 1.21585 * 119.99535 * 133.31702 * 9 8 7 11 11 N 1.34772 * 120.00213 * 313.32318 * 9 8 7 12 12 C 1.49215 * 126.05902 * 354.82874 * 11 9 8 13 13 C 1.50353 * 104.85852 * 172.91431 * 12 11 9 14 14 H 1.08994 * 109.73941 * 279.04988 * 13 12 11 15 15 C 1.51010 * 125.53809 * 144.30404 * 13 12 11 16 16 C 1.56394 * 101.59540 * 203.99948 * 15 13 12 17 17 C 1.55947 * 105.79004 * 25.01445 * 16 15 13 18 18 H 1.09000 * 110.49656 * 248.87286 * 17 16 15 19 19 N 1.46501 * 110.60401 * 126.26594 * 17 16 15 20 20 C 1.36934 * 119.99961 * 90.20418 * 19 17 16 21 21 H 1.07996 * 119.99963 * 359.97438 * 20 19 17 22 22 C 1.38809 * 119.99904 * 179.97438 * 20 19 17 23 23 N 1.31620 * 120.00363 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00007 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46908 * 90.00444 * 24 22 20 26 26 H 1.48505 * 109.47335 * 209.99880 * 24 22 20 27 27 H 1.48499 * 109.47297 * 330.00370 * 24 22 20 28 28 C 1.50290 * 104.15162 * 7.54618 * 17 16 15 29 29 H 1.08998 * 109.99489 * 80.47483 * 28 17 16 30 30 C 1.49703 * 126.05867 * 174.80753 * 11 9 8 31 31 H 1.08998 * 109.47315 * 274.27956 * 1 2 3 32 32 H 1.09002 * 109.47541 * 34.28570 * 1 2 3 33 33 H 1.09007 * 109.46493 * 154.28101 * 1 2 3 34 34 H 1.07999 * 120.36469 * 359.97438 * 3 2 1 35 35 H 0.96701 * 113.99840 * 90.00080 * 5 4 3 36 36 H 1.07994 * 119.69049 * 180.26272 * 7 6 4 37 37 H 1.08999 * 110.35968 * 54.07506 * 12 11 9 38 38 H 1.08994 * 110.36117 * 291.76028 * 12 11 9 39 39 H 1.09003 * 111.00201 * 322.07581 * 15 13 12 40 40 H 1.09001 * 111.00022 * 85.91633 * 15 13 12 41 41 H 1.08995 * 110.19257 * 144.10133 * 16 15 13 42 42 H 1.09005 * 110.18697 * 265.94199 * 16 15 13 43 43 H 0.97000 * 119.99968 * 270.20382 * 19 17 16 44 44 H 0.97005 * 120.00404 * 180.02562 * 23 22 20 45 45 H 1.08996 * 110.84215 * 36.68624 * 30 11 9 46 46 H 1.09002 * 110.84158 * 273.07565 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1852 0.0000 4 6 3.6047 1.1475 -0.0005 5 8 4.3041 2.3080 -0.0011 6 7 4.2547 -0.0063 -0.0005 7 6 3.6206 -1.1599 0.0054 8 6 2.2256 -1.2043 0.0005 9 6 1.5173 -2.4994 0.0015 10 8 0.5891 -2.6839 0.7649 11 7 1.8995 -3.4772 -0.8436 12 6 2.9418 -3.3628 -1.9051 13 6 3.1087 -4.7604 -2.4338 14 1 3.7591 -5.3299 -1.7700 15 6 3.3874 -5.1274 -3.8719 16 6 2.8393 -6.5909 -3.9347 17 6 1.7658 -6.6907 -2.8080 18 1 2.1123 -7.3442 -2.0074 19 7 0.4936 -7.1751 -3.3495 20 6 0.2300 -8.5185 -3.3807 21 1 0.9601 -9.2209 -3.0065 22 6 -0.9756 -8.9775 -3.8933 23 7 -1.8651 -8.1215 -4.3498 24 14 -1.3349 -10.8101 -3.9365 25 1 -2.0035 -11.2133 -2.6733 26 1 -2.2248 -11.1131 -5.0861 27 1 -0.0622 -11.5607 -4.0844 28 6 1.6227 -5.2797 -2.3107 29 1 0.9748 -4.7128 -2.9792 30 6 1.3538 -4.8706 -0.8833 31 1 -0.3634 0.0767 1.0248 32 1 -0.3634 0.8491 -0.5789 33 1 -0.3632 -0.9260 -0.4460 34 1 1.6934 2.1314 -0.0004 35 1 4.5075 2.6450 0.8822 36 1 4.1850 -2.0806 0.0095 37 1 3.8789 -3.0041 -1.4794 38 1 2.6042 -2.6953 -2.6978 39 1 2.8411 -4.4761 -4.5542 40 1 4.4567 -5.1013 -4.0815 41 1 2.3836 -6.7805 -4.9064 42 1 3.6445 -7.3023 -3.7509 43 1 -0.1619 -6.5443 -3.6859 44 1 -2.7078 -8.4422 -4.7076 45 1 0.2843 -4.8744 -0.6736 46 1 1.8890 -5.5167 -0.1873 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026358434.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:53 Heat of formation + Delta-G solvation = -5.460913 kcal Electronic energy + Delta-G solvation = -28367.979694 eV Core-core repulsion = 24451.745209 eV Total energy + Delta-G solvation = -3916.234485 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.26453 -40.29962 -38.73368 -37.30380 -35.45248 -34.18275 -33.44060 -31.37358 -30.94512 -29.28228 -28.59327 -28.15029 -25.52241 -24.76898 -23.24464 -22.95812 -22.42051 -20.27421 -19.84392 -19.20955 -18.77862 -17.70436 -17.38313 -17.02110 -16.32062 -16.18472 -15.53757 -14.95788 -14.82422 -14.73716 -14.13763 -14.03365 -13.94967 -13.64616 -13.51598 -13.19040 -12.92817 -12.84982 -12.63637 -12.44127 -12.24551 -12.08070 -11.92863 -11.57874 -11.46016 -11.11585 -10.83682 -10.78786 -10.50710 -10.27056 -10.17224 -10.13205 -9.93672 -9.85149 -9.71999 -9.56745 -9.31092 -8.93990 -8.70555 -6.99998 -5.79565 -3.08902 0.29888 0.76993 2.49711 2.72898 3.04730 3.40788 3.42130 3.47433 3.48911 3.99923 4.15896 4.24282 4.35830 4.55829 4.61301 4.81089 4.83266 4.98845 5.08337 5.21046 5.23596 5.32502 5.35563 5.38930 5.42889 5.51561 5.53654 5.64428 5.69951 5.81855 5.89723 5.91190 5.93169 6.00852 6.03193 6.08847 6.16359 6.29103 6.32184 6.46303 6.60162 6.75656 7.02075 7.02217 7.37924 7.44180 7.68107 7.99305 8.38514 9.49959 10.06378 10.40620 11.42805 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.021975 B = 0.002590 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.892291 B =10810.094771 C =11562.249605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.025 3.975 3 C -0.193 4.193 4 C 0.329 3.671 5 O -0.481 6.481 6 N -0.508 5.508 7 C 0.162 3.838 8 C -0.188 4.188 9 C 0.580 3.420 10 O -0.529 6.529 11 N -0.618 5.618 12 C 0.116 3.884 13 C -0.129 4.129 14 H 0.083 0.917 15 C -0.097 4.097 16 C -0.144 4.144 17 C 0.197 3.803 18 H 0.057 0.943 19 N -0.720 5.720 20 C -0.241 4.241 21 H 0.071 0.929 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C -0.118 4.118 29 H 0.082 0.918 30 C 0.129 3.871 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.147 0.853 35 H 0.403 0.597 36 H 0.168 0.832 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.086 0.914 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.237 19.162 8.381 24.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.016 3.984 3 C -0.214 4.214 4 C 0.151 3.849 5 O -0.289 6.289 6 N -0.227 5.227 7 C 0.003 3.997 8 C -0.194 4.194 9 C 0.368 3.632 10 O -0.406 6.406 11 N -0.352 5.352 12 C -0.006 4.006 13 C -0.149 4.149 14 H 0.102 0.898 15 C -0.135 4.135 16 C -0.185 4.185 17 C 0.085 3.915 18 H 0.075 0.925 19 N -0.360 5.360 20 C -0.372 4.372 21 H 0.089 0.911 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.737 3.263 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.138 4.138 29 H 0.100 0.900 30 C 0.009 3.991 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.165 0.835 35 H 0.262 0.738 36 H 0.185 0.815 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.218 0.782 44 H 0.065 0.935 45 H 0.104 0.896 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.544 18.963 8.257 24.190 hybrid contribution -1.114 -0.629 0.226 1.299 sum 11.430 18.335 8.483 23.211 Atomic orbital electron populations 1.20947 0.88892 1.04036 1.03872 1.20285 0.97425 0.90665 0.89977 1.21938 0.93746 0.99481 1.06254 1.19326 0.87081 0.85219 0.93294 1.84718 1.75950 1.34087 1.34126 1.67191 1.41923 0.98204 1.15384 1.22767 0.90097 0.95260 0.91530 1.20900 0.95360 0.94373 1.08742 1.17504 0.83039 0.82444 0.80261 1.90826 1.28502 1.81095 1.40168 1.49807 1.39369 1.12234 1.33812 1.21441 0.90785 0.98111 0.90234 1.22175 0.98874 0.94783 0.99022 0.89831 1.21746 1.00225 0.98099 0.93472 1.23807 0.98848 0.93663 1.02132 1.20085 0.87809 0.90202 0.93375 0.92510 1.42492 1.14879 1.05175 1.73442 1.19238 1.00159 0.83570 1.34234 0.91119 1.24748 0.96881 0.97599 1.01613 1.69658 1.08541 1.32683 1.47121 0.86211 0.77752 0.85179 0.77159 1.21704 1.21815 1.20752 1.22529 0.95689 0.99929 0.95647 0.90005 1.21570 1.00327 0.80182 0.97008 0.89333 0.90681 0.90048 0.83502 0.73811 0.81547 0.90964 0.91126 0.91608 0.92075 0.90743 0.92597 0.78161 0.93478 0.89576 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 9.21 36.01 0.33 -0.83 16 2 C 0.02 0.26 5.94 -103.96 -0.62 -0.36 16 3 C -0.19 -1.69 9.74 -39.34 -0.38 -2.08 16 4 C 0.33 3.21 7.74 -16.96 -0.13 3.07 16 5 O -0.48 -3.80 13.55 -18.18 -0.25 -4.05 16 6 N -0.51 -5.64 10.37 -12.97 -0.13 -5.78 16 7 C 0.16 1.70 9.51 -17.14 -0.16 1.54 16 8 C -0.19 -2.19 5.37 -104.83 -0.56 -2.75 16 9 C 0.58 8.10 6.62 -12.44 -0.08 8.02 16 10 O -0.53 -9.04 15.82 5.29 0.08 -8.96 16 11 N -0.62 -8.10 3.43 -172.76 -0.59 -8.69 16 12 C 0.12 1.25 6.08 -3.86 -0.02 1.23 16 13 C -0.13 -1.53 2.77 -90.26 -0.25 -1.78 16 14 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 15 C -0.10 -1.19 6.72 -25.91 -0.17 -1.37 16 16 C -0.14 -2.27 6.74 -23.33 -0.16 -2.43 16 17 C 0.20 3.57 3.41 -67.71 -0.23 3.34 16 18 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 19 N -0.72 -17.12 5.11 -53.21 -0.27 -17.39 16 20 C -0.24 -6.45 9.96 -15.06 -0.15 -6.60 16 21 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -27.69 13.06 55.49 0.72 -26.96 16 24 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 28 C -0.12 -1.79 2.41 -90.34 -0.22 -2.01 16 29 H 0.08 1.37 7.92 -51.93 -0.41 0.96 16 30 C 0.13 1.91 6.83 -3.31 -0.02 1.89 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 33 H 0.08 0.96 6.53 -51.92 -0.34 0.62 16 34 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.40 1.09 9.06 45.56 0.41 1.50 16 36 H 0.17 1.46 6.41 -52.49 -0.34 1.12 16 37 H 0.07 0.64 5.56 -51.93 -0.29 0.35 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 1.36 7.98 -51.93 -0.41 0.95 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.38 9.85 7.67 -40.82 -0.31 9.54 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.09 1.45 8.06 -51.93 -0.42 1.03 16 46 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 373.34 15.07 5.63 5.63 Total: -1.00 -33.12 373.34 -8.64 -41.76 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.88 Total: 8.96 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -2.93 Total: -1.55 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -0.27 Total: -58.82 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.16 Total: -13.01 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.12 -8.64 -41.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026358434.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.304 kcal (2) G-P(sol) polarization free energy of solvation -33.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds