Wall clock time and date at job start Tue Mar 31 2020 17:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38004 * 120.81606 * 2 1 4 4 C 1.39121 * 119.26443 * 180.02562 * 3 2 1 5 5 O 1.35497 * 119.52631 * 179.97438 * 4 3 2 6 6 N 1.32437 * 120.94674 * 359.97438 * 4 3 2 7 7 C 1.31639 * 121.80536 * 359.72231 * 6 4 3 8 8 C 1.39566 * 120.61969 * 0.54344 * 7 6 4 9 9 C 1.47613 * 120.49765 * 179.74430 * 8 7 6 10 10 O 1.21585 * 119.99535 * 133.31702 * 9 8 7 11 11 N 1.34772 * 120.00213 * 313.32318 * 9 8 7 12 12 C 1.49215 * 126.05902 * 354.82874 * 11 9 8 13 13 C 1.50353 * 104.85852 * 172.91431 * 12 11 9 14 14 H 1.08994 * 109.73941 * 279.04988 * 13 12 11 15 15 C 1.51010 * 125.53809 * 144.30404 * 13 12 11 16 16 C 1.56394 * 101.59540 * 203.99948 * 15 13 12 17 17 C 1.55947 * 105.79004 * 25.01445 * 16 15 13 18 18 H 1.09000 * 110.49656 * 248.87286 * 17 16 15 19 19 N 1.46501 * 110.60401 * 126.26594 * 17 16 15 20 20 C 1.36934 * 119.99961 * 90.20418 * 19 17 16 21 21 H 1.07996 * 119.99963 * 359.97438 * 20 19 17 22 22 C 1.38809 * 119.99904 * 179.97438 * 20 19 17 23 23 N 1.31620 * 120.00363 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00007 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46908 * 90.00444 * 24 22 20 26 26 H 1.48505 * 109.47335 * 209.99880 * 24 22 20 27 27 H 1.48499 * 109.47297 * 330.00370 * 24 22 20 28 28 C 1.50290 * 104.15162 * 7.54618 * 17 16 15 29 29 H 1.08998 * 109.99489 * 80.47483 * 28 17 16 30 30 C 1.49703 * 126.05867 * 174.80753 * 11 9 8 31 31 H 1.08998 * 109.47315 * 274.27956 * 1 2 3 32 32 H 1.09002 * 109.47541 * 34.28570 * 1 2 3 33 33 H 1.09007 * 109.46493 * 154.28101 * 1 2 3 34 34 H 1.07999 * 120.36469 * 359.97438 * 3 2 1 35 35 H 0.96701 * 113.99840 * 90.00080 * 5 4 3 36 36 H 1.07994 * 119.69049 * 180.26272 * 7 6 4 37 37 H 1.08999 * 110.35968 * 54.07506 * 12 11 9 38 38 H 1.08994 * 110.36117 * 291.76028 * 12 11 9 39 39 H 1.09003 * 111.00201 * 322.07581 * 15 13 12 40 40 H 1.09001 * 111.00022 * 85.91633 * 15 13 12 41 41 H 1.08995 * 110.19257 * 144.10133 * 16 15 13 42 42 H 1.09005 * 110.18697 * 265.94199 * 16 15 13 43 43 H 0.97000 * 119.99968 * 270.20382 * 19 17 16 44 44 H 0.97005 * 120.00404 * 180.02562 * 23 22 20 45 45 H 1.08996 * 110.84215 * 36.68624 * 30 11 9 46 46 H 1.09002 * 110.84158 * 273.07565 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1852 0.0000 4 6 3.6047 1.1475 -0.0005 5 8 4.3041 2.3080 -0.0011 6 7 4.2547 -0.0063 -0.0005 7 6 3.6206 -1.1599 0.0054 8 6 2.2256 -1.2043 0.0005 9 6 1.5173 -2.4994 0.0015 10 8 0.5891 -2.6839 0.7649 11 7 1.8995 -3.4772 -0.8436 12 6 2.9418 -3.3628 -1.9051 13 6 3.1087 -4.7604 -2.4338 14 1 3.7591 -5.3299 -1.7700 15 6 3.3874 -5.1274 -3.8719 16 6 2.8393 -6.5909 -3.9347 17 6 1.7658 -6.6907 -2.8080 18 1 2.1123 -7.3442 -2.0074 19 7 0.4936 -7.1751 -3.3495 20 6 0.2300 -8.5185 -3.3807 21 1 0.9601 -9.2209 -3.0065 22 6 -0.9756 -8.9775 -3.8933 23 7 -1.8651 -8.1215 -4.3498 24 14 -1.3349 -10.8101 -3.9365 25 1 -2.0035 -11.2133 -2.6733 26 1 -2.2248 -11.1131 -5.0861 27 1 -0.0622 -11.5607 -4.0844 28 6 1.6227 -5.2797 -2.3107 29 1 0.9748 -4.7128 -2.9792 30 6 1.3538 -4.8706 -0.8833 31 1 -0.3634 0.0767 1.0248 32 1 -0.3634 0.8491 -0.5789 33 1 -0.3632 -0.9260 -0.4460 34 1 1.6934 2.1314 -0.0004 35 1 4.5075 2.6450 0.8822 36 1 4.1850 -2.0806 0.0095 37 1 3.8789 -3.0041 -1.4794 38 1 2.6042 -2.6953 -2.6978 39 1 2.8411 -4.4761 -4.5542 40 1 4.4567 -5.1013 -4.0815 41 1 2.3836 -6.7805 -4.9064 42 1 3.6445 -7.3023 -3.7509 43 1 -0.1619 -6.5443 -3.6859 44 1 -2.7078 -8.4422 -4.7076 45 1 0.2843 -4.8744 -0.6736 46 1 1.8890 -5.5167 -0.1873 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026358434.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:52 Heat of formation + Delta-G solvation = -30.909691 kcal Electronic energy + Delta-G solvation = -28369.083236 eV Core-core repulsion = 24451.745209 eV Total energy + Delta-G solvation = -3917.338027 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.17119 -41.29815 -39.79796 -38.02313 -36.85471 -35.17584 -34.89623 -32.68421 -32.28522 -30.36080 -29.88048 -28.95771 -27.03574 -25.67390 -24.88097 -24.07340 -23.27376 -21.45161 -20.82011 -20.50613 -19.45511 -19.15020 -18.50935 -18.27300 -17.45455 -16.90867 -16.64446 -16.40253 -16.03856 -15.68557 -15.53996 -15.32334 -15.01424 -14.80244 -14.47348 -14.34002 -14.02011 -13.85218 -13.66587 -13.41177 -13.27461 -13.13509 -13.09121 -12.98747 -12.74092 -12.61574 -12.44534 -12.24247 -12.11721 -11.79547 -11.60969 -11.37964 -11.24998 -11.00080 -10.90261 -10.69595 -10.53011 -10.10633 -9.76691 -8.98074 -7.92879 -5.20771 -0.47189 0.03229 1.47387 1.48489 1.48973 1.57004 1.70502 2.36141 2.57216 2.66543 2.92486 3.33505 3.41439 3.45259 3.54840 3.69033 3.85809 3.92717 4.05722 4.16025 4.19366 4.27133 4.33101 4.42791 4.50704 4.53135 4.59484 4.63052 4.64044 4.67971 4.71113 4.76792 4.90599 4.92428 4.98493 5.06192 5.14449 5.17868 5.23427 5.35157 5.38163 5.49893 5.52720 5.64973 6.29443 6.33907 6.52263 6.75617 6.92705 7.35150 8.12308 8.33791 9.30754 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.021975 B = 0.002590 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.892291 B =10810.094771 C =11562.249605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.017 3.983 3 C -0.184 4.184 4 C 0.331 3.669 5 O -0.486 6.486 6 N -0.526 5.526 7 C 0.168 3.832 8 C -0.205 4.205 9 C 0.580 3.420 10 O -0.571 6.571 11 N -0.616 5.616 12 C 0.119 3.881 13 C -0.107 4.107 14 H 0.101 0.899 15 C -0.085 4.085 16 C -0.137 4.137 17 C 0.187 3.813 18 H 0.055 0.945 19 N -0.734 5.734 20 C -0.233 4.233 21 H 0.078 0.922 22 C -0.079 4.079 23 N -0.972 5.972 24 Si 0.969 3.031 25 H -0.290 1.290 26 H -0.299 1.299 27 H -0.267 1.267 28 C -0.120 4.120 29 H 0.061 0.939 30 C 0.132 3.868 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.051 0.949 34 H 0.175 0.825 35 H 0.426 0.574 36 H 0.184 0.816 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.094 0.906 41 H 0.044 0.956 42 H 0.070 0.930 43 H 0.370 0.630 44 H 0.249 0.751 45 H 0.053 0.947 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.237 20.690 8.820 27.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.009 3.991 3 C -0.205 4.205 4 C 0.154 3.846 5 O -0.298 6.298 6 N -0.245 5.245 7 C 0.010 3.990 8 C -0.211 4.211 9 C 0.369 3.631 10 O -0.451 6.451 11 N -0.349 5.349 12 C -0.002 4.002 13 C -0.126 4.126 14 H 0.119 0.881 15 C -0.123 4.123 16 C -0.178 4.178 17 C 0.078 3.922 18 H 0.073 0.927 19 N -0.374 5.374 20 C -0.365 4.365 21 H 0.096 0.904 22 C -0.271 4.271 23 N -0.623 5.623 24 Si 0.799 3.201 25 H -0.218 1.218 26 H -0.225 1.225 27 H -0.192 1.192 28 C -0.140 4.140 29 H 0.079 0.921 30 C 0.011 3.989 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.192 0.808 35 H 0.289 0.711 36 H 0.200 0.800 37 H 0.122 0.878 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.113 0.887 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.202 0.798 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 15.636 20.515 8.717 27.228 hybrid contribution -1.969 -0.998 0.146 2.213 sum 13.667 19.517 8.863 25.422 Atomic orbital electron populations 1.20920 0.88807 1.03561 1.04148 1.20455 0.97700 0.90989 0.89972 1.22121 0.93451 0.99869 1.05058 1.19526 0.87561 0.85413 0.92130 1.84671 1.75675 1.33218 1.36200 1.67257 1.42290 0.98687 1.16277 1.22921 0.89479 0.95862 0.90773 1.20751 0.95942 0.93298 1.11093 1.17899 0.82509 0.83158 0.79497 1.90798 1.30468 1.81891 1.41918 1.49797 1.39622 1.11332 1.34161 1.21588 0.91321 0.97485 0.89789 1.22154 0.95847 0.95359 0.99231 0.88100 1.21667 1.01963 0.95108 0.93569 1.23602 0.98104 0.96898 0.99184 1.20374 0.86216 0.91563 0.94029 0.92698 1.42712 1.16723 1.04088 1.73834 1.19642 0.99797 0.85065 1.32032 0.90393 1.25532 0.97247 1.01595 1.02721 1.69820 1.08884 1.34387 1.49231 0.85198 0.77762 0.80656 0.76523 1.21768 1.22545 1.19175 1.22278 0.98473 0.97981 0.95298 0.92068 1.21407 0.98780 0.81742 0.96995 0.89184 0.88153 0.92950 0.80756 0.71145 0.79968 0.87814 0.90752 0.91849 0.88745 0.93660 0.91121 0.79801 0.94240 0.92828 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 9.21 71.24 0.66 -1.54 16 2 C 0.02 0.33 5.94 -19.43 -0.12 0.21 16 3 C -0.18 -2.72 9.74 22.43 0.22 -2.51 16 4 C 0.33 5.50 7.74 84.81 0.66 6.16 16 5 O -0.49 -6.11 13.55 -87.98 -1.19 -7.30 16 6 N -0.53 -10.24 10.37 -307.81 -3.19 -13.43 16 7 C 0.17 3.13 9.51 85.04 0.81 3.94 16 8 C -0.21 -4.53 5.37 -20.00 -0.11 -4.64 16 9 C 0.58 16.23 6.62 86.72 0.57 16.81 16 10 O -0.57 -20.31 15.82 -3.98 -0.06 -20.37 16 11 N -0.62 -15.81 3.43 -818.75 -2.80 -18.61 16 12 C 0.12 2.27 6.08 85.00 0.52 2.78 16 13 C -0.11 -2.24 2.77 -10.56 -0.03 -2.27 16 14 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 15 C -0.08 -1.85 6.72 31.13 0.21 -1.64 16 16 C -0.14 -4.18 6.74 32.80 0.22 -3.96 16 17 C 0.19 6.81 3.41 45.14 0.15 6.97 16 18 H 0.05 2.01 8.09 -2.39 -0.02 1.99 16 19 N -0.73 -36.07 5.11 -322.26 -1.65 -37.72 16 20 C -0.23 -12.70 9.96 84.03 0.84 -11.87 16 21 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 22 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 23 N -0.97 -59.92 13.06 21.65 0.28 -59.63 16 24 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 C -0.12 -3.66 2.41 -10.62 -0.03 -3.69 16 29 H 0.06 2.13 7.92 -2.39 -0.02 2.11 16 30 C 0.13 3.98 6.83 85.07 0.58 4.56 16 31 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.10 1.29 8.13 -2.39 -0.02 1.27 16 33 H 0.05 1.29 6.53 -2.38 -0.02 1.27 16 34 H 0.18 1.54 8.06 -2.91 -0.02 1.51 16 35 H 0.43 0.89 9.06 -74.06 -0.67 0.22 16 36 H 0.18 2.61 6.41 -2.91 -0.02 2.59 16 37 H 0.10 1.41 5.56 -2.39 -0.01 1.39 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.04 1.65 7.98 -2.39 -0.02 1.63 16 42 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 43 H 0.37 19.98 7.67 -92.71 -0.71 19.27 16 44 H 0.25 14.96 8.31 -92.70 -0.77 14.19 16 45 H 0.05 1.94 8.06 -2.39 -0.02 1.93 16 46 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -74.79 373.34 -1.32 -76.12 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: -0.36 Total: 27.49 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 5.62 Total: 5.25 kcal Atomic # 7 Polarization: -122.04 SS G_CDS: -7.36 Total: -129.40 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -1.25 Total: -27.67 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -74.79 -1.32 -76.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026358434.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.210 kcal (2) G-P(sol) polarization free energy of solvation -74.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds