Wall clock time and date at job start Tue Mar 31 2020 17:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37996 * 120.82358 * 2 1 4 4 C 1.39124 * 119.27017 * 179.97438 * 3 2 1 5 5 O 1.35497 * 119.52822 * 180.02562 * 4 3 2 6 6 N 1.32434 * 120.94735 * 359.97438 * 4 3 2 7 7 C 1.31637 * 121.80001 * 359.74654 * 6 4 3 8 8 C 1.39564 * 120.62597 * 0.53953 * 7 6 4 9 9 C 1.47617 * 120.49958 * 179.72104 * 8 7 6 10 10 O 1.21578 * 119.99762 * 142.74245 * 9 8 7 11 11 N 1.34775 * 119.99984 * 322.73765 * 9 8 7 12 12 C 1.47353 * 125.70593 * 354.87945 * 11 9 8 13 13 C 1.54654 * 105.13238 * 204.80077 * 12 11 9 14 14 H 1.08999 * 113.79202 * 200.28203 * 13 12 11 15 15 C 1.54445 * 108.64670 * 71.44731 * 13 12 11 16 16 C 1.55187 * 104.21774 * 215.59112 * 15 13 12 17 17 C 1.53727 * 106.54126 * 24.28374 * 16 15 13 18 18 H 1.09001 * 109.91006 * 239.18422 * 17 16 15 19 19 N 1.46496 * 110.07135 * 117.99451 * 17 16 15 20 20 C 1.36939 * 119.99971 * 160.01571 * 19 17 16 21 21 H 1.08002 * 119.99652 * 0.02562 * 20 19 17 22 22 C 1.38811 * 120.00220 * 179.97438 * 20 19 17 23 23 N 1.31620 * 119.99989 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99968 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46787 * 60.00594 * 24 22 20 26 26 H 1.48500 * 109.46823 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47420 * 300.00188 * 24 22 20 28 28 C 1.53904 * 107.08004 * 358.54506 * 17 16 15 29 29 H 1.09004 * 112.92322 * 215.03990 * 28 17 16 30 30 C 1.47035 * 125.69848 * 174.82676 * 11 9 8 31 31 H 1.08996 * 109.46834 * 265.33190 * 1 2 3 32 32 H 1.08997 * 109.46846 * 25.33243 * 1 2 3 33 33 H 1.08998 * 109.46919 * 145.33399 * 1 2 3 34 34 H 1.08002 * 120.36417 * 359.95109 * 3 2 1 35 35 H 0.96699 * 114.00388 * 89.99981 * 5 4 3 36 36 H 1.08007 * 119.69106 * 180.28924 * 7 6 4 37 37 H 1.09001 * 110.31457 * 85.88249 * 12 11 9 38 38 H 1.09002 * 110.30885 * 323.70799 * 12 11 9 39 39 H 1.09012 * 110.38528 * 335.27691 * 15 13 12 40 40 H 1.08995 * 110.38846 * 97.64591 * 15 13 12 41 41 H 1.09003 * 110.56022 * 264.76385 * 16 15 13 42 42 H 1.08993 * 109.60894 * 143.28913 * 16 15 13 43 43 H 0.97001 * 120.00529 * 340.01640 * 19 17 16 44 44 H 0.96996 * 120.00006 * 179.97438 * 23 22 20 45 45 H 1.08997 * 109.82508 * 58.23779 * 30 11 9 46 46 H 1.08998 * 109.90514 * 297.31280 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1473 0.0005 5 8 4.3043 2.3078 0.0011 6 7 4.2548 -0.0065 0.0016 7 6 3.6205 -1.1600 0.0071 8 6 2.2256 -1.2044 0.0007 9 6 1.5172 -2.4995 0.0007 10 8 0.4873 -2.6290 0.6337 11 7 2.0120 -3.5382 -0.7011 12 6 3.1845 -3.4932 -1.5925 13 6 2.9716 -4.6487 -2.5981 14 1 3.8860 -4.9738 -3.0944 15 6 1.8244 -4.2633 -3.5576 16 6 1.0914 -5.6031 -3.8329 17 6 1.3902 -6.5196 -2.6354 18 1 1.8879 -7.4270 -2.9775 19 7 0.1459 -6.8640 -1.9431 20 6 0.0983 -7.9617 -1.1259 21 1 0.9782 -8.5733 -0.9914 22 6 -1.0806 -8.2878 -0.4695 23 7 -2.1528 -7.5421 -0.6330 24 14 -1.1456 -9.7857 0.6448 25 1 -0.1558 -9.6305 1.7409 26 1 -2.5078 -9.9145 1.2219 27 1 -0.8251 -11.0030 -0.1430 28 6 2.3179 -5.7379 -1.6884 29 1 3.0485 -6.3742 -1.1889 30 6 1.4728 -4.9061 -0.7043 31 1 -0.3633 -0.0836 1.0242 32 1 -0.3633 0.9288 -0.4397 33 1 -0.3633 -0.8452 -0.5845 34 1 1.6936 2.1314 -0.0008 35 1 4.5070 2.6445 0.8846 36 1 4.1849 -2.0809 0.0125 37 1 4.0998 -3.6517 -1.0222 38 1 3.2249 -2.5383 -2.1166 39 1 1.1620 -3.5377 -3.0853 40 1 2.2262 -3.8624 -4.4881 41 1 1.4591 -6.0588 -4.7523 42 1 0.0188 -5.4246 -3.9077 43 1 -0.6444 -6.3144 -2.0636 44 1 -2.9766 -7.7701 -0.1746 45 1 0.4327 -4.8927 -1.0300 46 1 1.5415 -5.3344 0.2956 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026358435.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:57 Heat of formation + Delta-G solvation = -14.348629 kcal Electronic energy + Delta-G solvation = -29149.628209 eV Core-core repulsion = 25233.008323 eV Total energy + Delta-G solvation = -3916.619886 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.14944 -40.08347 -38.44756 -37.16062 -35.19482 -34.02788 -33.24442 -31.09087 -30.89569 -29.06703 -28.36397 -28.01727 -25.47374 -24.81039 -23.33224 -22.86927 -22.39815 -19.88193 -19.67816 -18.78392 -18.66415 -17.72711 -17.35510 -16.89830 -16.19250 -15.78880 -15.59212 -14.91416 -14.68288 -14.63330 -14.03717 -13.88317 -13.65470 -13.36297 -13.11747 -13.03969 -12.86047 -12.77626 -12.63611 -12.47177 -12.23921 -12.05809 -11.94201 -11.42338 -11.07028 -10.77262 -10.71405 -10.61767 -10.38458 -10.34196 -10.20766 -10.06780 -9.92496 -9.81593 -9.62893 -9.52025 -9.17574 -8.88063 -8.31958 -6.96784 -5.77042 -3.06853 0.39822 0.88668 2.73000 3.09879 3.19167 3.44100 3.48832 3.49978 3.56068 4.25804 4.36110 4.47216 4.55472 4.59970 4.71400 4.85043 4.94043 5.04363 5.16788 5.35550 5.38817 5.46344 5.50591 5.55034 5.55420 5.58389 5.60031 5.79110 5.81429 5.86133 5.95356 6.03975 6.07970 6.10842 6.18397 6.29011 6.31920 6.50106 6.56269 6.69003 6.81162 6.82934 6.98438 7.10482 7.53549 7.69672 7.72045 8.29249 8.40870 9.52054 10.08071 10.41695 11.44918 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017143 B = 0.003254 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.904949 B = 8601.508598 C = 9331.815979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.027 3.973 3 C -0.195 4.195 4 C 0.327 3.673 5 O -0.482 6.482 6 N -0.510 5.510 7 C 0.159 3.841 8 C -0.188 4.188 9 C 0.571 3.429 10 O -0.522 6.522 11 N -0.608 5.608 12 C 0.099 3.901 13 C -0.106 4.106 14 H 0.102 0.898 15 C -0.113 4.113 16 C -0.127 4.127 17 C 0.181 3.819 18 H 0.051 0.949 19 N -0.718 5.718 20 C -0.245 4.245 21 H 0.070 0.930 22 C -0.008 4.008 23 N -0.928 5.928 24 Si 0.904 3.096 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.287 1.287 28 C -0.116 4.116 29 H 0.082 0.918 30 C 0.130 3.870 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.146 0.854 35 H 0.403 0.597 36 H 0.168 0.832 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.384 0.616 44 H 0.256 0.744 45 H 0.093 0.907 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.440 17.107 -2.134 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.019 3.981 3 C -0.216 4.216 4 C 0.149 3.851 5 O -0.290 6.290 6 N -0.229 5.229 7 C 0.001 3.999 8 C -0.193 4.193 9 C 0.358 3.642 10 O -0.399 6.399 11 N -0.341 5.341 12 C -0.024 4.024 13 C -0.126 4.126 14 H 0.120 0.880 15 C -0.150 4.150 16 C -0.166 4.166 17 C 0.070 3.930 18 H 0.069 0.931 19 N -0.359 5.359 20 C -0.376 4.376 21 H 0.088 0.912 22 C -0.205 4.205 23 N -0.576 5.576 24 Si 0.735 3.265 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.138 4.138 29 H 0.100 0.900 30 C 0.009 3.991 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.164 0.836 35 H 0.261 0.739 36 H 0.185 0.815 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.219 0.781 44 H 0.066 0.934 45 H 0.111 0.889 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.676 16.950 -2.250 21.285 hybrid contribution -0.930 -0.534 1.192 1.603 sum 11.747 16.415 -1.058 20.213 Atomic orbital electron populations 1.20933 0.88763 1.03367 1.04381 1.20327 0.97546 0.90645 0.89589 1.21942 0.93716 0.99440 1.06538 1.19333 0.87085 0.85212 0.93461 1.84709 1.75987 1.34174 1.34091 1.67190 1.41965 0.98203 1.15565 1.22907 0.90349 0.95287 0.91352 1.20978 0.95262 0.94635 1.08473 1.17471 0.84403 0.82329 0.79959 1.90849 1.22972 1.82981 1.43105 1.48537 1.30355 1.10805 1.44428 1.22424 0.88497 0.99708 0.91754 1.23219 0.98794 0.94935 0.95618 0.88036 1.22408 0.96641 0.97893 0.98105 1.22546 1.00817 0.94773 0.98430 1.20695 0.88255 0.94540 0.89544 0.93102 1.42621 1.08061 1.31517 1.53730 1.19142 0.96143 1.02804 1.19486 0.91245 1.24734 0.95965 0.99024 1.00754 1.69638 1.01331 1.39882 1.46736 0.86318 0.76662 0.82779 0.80695 1.21258 1.21746 1.21329 1.23578 0.97787 0.96026 0.96445 0.89969 1.21950 0.99826 0.77532 0.99755 0.89185 0.91161 0.89795 0.83609 0.73890 0.81520 0.91574 0.91100 0.91554 0.92338 0.91955 0.91399 0.78052 0.93384 0.88866 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 8.81 36.01 0.32 -1.02 16 2 C 0.03 0.32 5.94 -103.96 -0.62 -0.30 16 3 C -0.20 -1.94 9.71 -39.34 -0.38 -2.32 16 4 C 0.33 3.52 7.74 -16.96 -0.13 3.39 16 5 O -0.48 -4.19 13.55 -18.18 -0.25 -4.44 16 6 N -0.51 -6.21 10.37 -12.96 -0.13 -6.34 16 7 C 0.16 1.89 9.35 -17.14 -0.16 1.73 16 8 C -0.19 -2.50 5.39 -104.82 -0.57 -3.06 16 9 C 0.57 9.34 6.97 -12.43 -0.09 9.26 16 10 O -0.52 -10.54 15.37 5.30 0.08 -10.46 16 11 N -0.61 -9.34 2.84 -172.07 -0.49 -9.82 16 12 C 0.10 1.16 4.46 -2.71 -0.01 1.15 16 13 C -0.11 -1.29 4.26 -87.25 -0.37 -1.67 16 14 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 15 C -0.11 -1.47 5.91 -24.82 -0.15 -1.62 16 16 C -0.13 -1.95 6.60 -25.20 -0.17 -2.12 16 17 C 0.18 3.28 3.25 -67.08 -0.22 3.06 16 18 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16 19 N -0.72 -16.88 3.54 -52.60 -0.19 -17.06 16 20 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 21 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 22 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 23 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 24 Si 0.90 22.21 29.55 -169.99 -5.02 17.19 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 C -0.12 -1.85 3.89 -87.84 -0.34 -2.19 16 29 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 30 C 0.13 2.40 5.43 -3.18 -0.02 2.39 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 33 H 0.08 1.14 6.83 -51.93 -0.35 0.79 16 34 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.40 1.42 9.06 45.56 0.41 1.83 16 36 H 0.17 1.71 5.86 -52.48 -0.31 1.40 16 37 H 0.07 0.65 6.99 -51.93 -0.36 0.29 16 38 H 0.07 0.77 7.21 -51.93 -0.37 0.39 16 39 H 0.07 0.97 7.29 -51.92 -0.38 0.59 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 1.15 7.56 -51.93 -0.39 0.76 16 43 H 0.38 9.85 6.95 -40.82 -0.28 9.57 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.09 2.06 6.30 -51.93 -0.33 1.73 16 46 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 366.05 15.07 5.52 5.52 Total: -1.00 -33.13 366.05 -8.62 -41.74 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -5.72 Total: 10.93 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -3.14 Total: -0.27 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: -0.08 Total: -60.21 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.16 Total: -14.90 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.13 -8.62 -41.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026358435.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.396 kcal (2) G-P(sol) polarization free energy of solvation -33.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds